BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476603

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G74660.1 | Symbols: MIF1 | mini zinc finger 1 | chr1:2804757...   876    0.0  


> AT1G74660.1 | Symbols: MIF1 | mini zinc finger 1 | chr1:28047576-28048127 
REVERSE LENGTH=552
Length=552

 Score =  876 bits (474),  Expect = 0.0
 Identities = 532/558 (95%), Gaps = 12/558 (2%)
 Strand=Plus/Plus

Query  1    TCGTTTTCATAAAGAGTCTTTCGTAAGACCAAAGAGCCATTTTCGATTCCAGGGCTAAGA  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1    TCGTTTTCATAAAGAGTCTTTCGTAAGACCAAAGAGCCATTTTCGATTCCAGGGCTAAAA  60

Query  61   CTAGGGTTTCACAGTTCATGATGAAGAAGAGACAGATGGTAATCAAGCAGAGATCAAGAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTAGGGTTTCACAGTTCATGATGAAGAAGAGACAGATGGTAATCAAGCAGAGATCAAGAA  120

Query  121  ACTCCAACACATCTTCCTCTAGGACTACTACTTCGTCTTCTTCTTCCTCCTCCTCTGAGA  180
            |||||||||||||||||||| ||||||||||||||||||||||||| ||||||   ||||
Sbjct  121  ACTCCAACACATCTTCCTCTTGGACTACTACTTCGTCTTCTTCTTCTTCCTCC---GAGA  177

Query  181  TCAGTAACGTCCGTTACGTGGAGTGCCAGAAGAATCACGCTGCTAACATCGGAGGTTACG  240
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct  178  TCAGTAACGTCCGTTACGTGGAGTGTCAGAAGAATCACGCTGCTAACATCGGAGGCTACG  237

Query  241  CCGTCGACGGTTGCCGTGAGTTCATGGCCGCCGGAGTTGAAGGAACCGTTGATGCTTTGA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  CCGTCGACGGTTGCCGTGAGTTCATGGCCGCCGGAGTTGAAGGAACCGTTGATGCTTTGA  297

Query  301  GATGCGCCGCTTGTGGTTGTCACCGGAATTTTCACCGGAAGGAAGTTGATACGGAAGTTG  360
            ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  298  GATGCGCGGCTTGTGGTTGTCACCGGAATTTTCACCGGAAGGAAGTTGATACTGAGGTTG  357

Query  361  TTTGTGAGTATTCTCCACCTAACGCTTgatttttca-aggattttactcttttaatt-tt  418
            |||||||||||||||||||||||||||||||||| | ||||||||||| ||||  || ||
Sbjct  358  TTTGTGAGTATTCTCCACCTAACGCTTGATTTTT-AGAGGATTTTACTTTTTTC-TTCTT  415

Query  419  ttggtttgggtttatcgattgatttttaaagatgaatttattagaggatatttgTATATG  478
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  416  TTGGTTTGGATTTATCGATTGATTTTTAAAGATGAATTTGTTAGAGGATATTTGTATATG  475

Query  479  AATATTGATGTGTATATCAA---CAGGC-TACCGCCCATCTATATCTATAGGTATTTATA  534
            ||||||||||||||||||||   ||| | |||||||||||||||||||||||||| ||||
Sbjct  476  AATATTGATGTGTATATCAAAAACAG-CATACCGCCCATCTATATCTATAGGTATATATA  534

Query  535  AAATTGCCTGTTGGTTTG  552
            ||||||| ||||||||||
Sbjct  535  AAATTGCTTGTTGGTTTG  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5