BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476604
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74680.1 | Symbols: | Exostosin family protein | chr1:28059... 2252 0.0
> AT1G74680.1 | Symbols: | Exostosin family protein | chr1:28059188-28061119
FORWARD LENGTH=1861
Length=1861
Score = 2252 bits (1219), Expect = 0.0
Identities = 1408/1498 (94%), Gaps = 17/1498 (1%)
Strand=Plus/Plus
Query 105 AATCGATGATGGTCGAAAGCTGGAACCTTTTTCTGCGAATCGA-T---C--C-----AAC 153
|||||||||||||||||||||| ||||||||||||| |||||| | | | ||
Sbjct 249 AATCGATGATGGTCGAAAGCTGAAACCTTTTTCTGCAAATCGATTAACCGACAAGAAAAT 308
Query 154 CCAACCCAACCCTACCCACTTTGGTTTTGTTTGGATGATAAAAATGTCGGAAAAGAGTTT 213
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 309 CCAACCCAACCC-ACCCACTTT-GTTTTGTTTGGATGATAAAAATGTCGGAAAAGAGTTT 366
Query 214 GCTTTCTTCAAAATTCCTCTTTTACACGATAACTGTTTCAACGCTACTCTTCATTGTCTC 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GCTTTCTTCAAAATTCCTCTTTTACACGATAACTGTTTCAACGCTACTCTTCATTGTCTC 426
Query 274 TTCTCTCTTCTTCCTCCAACGCAACGAATCCTCTTTCACTTCAAGTTTAGTTCGCAAGCT 333
||||||| ||||||| |||||| |||| || |||||||||||||||||||||||||||||
Sbjct 427 TTCTCTCGTCTTCCTTCAACGCCACGATTCTTCTTTCACTTCAAGTTTAGTTCGCAAGCT 486
Query 334 GATTCTTCCAAGAACAGACATCAAGAACGACGAATTCGGAAAAATCGATACTTTATGCCA 393
|||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| |
Sbjct 487 GATTCTTCCAAGAACAGACATCAAGAACGAAGAATTCGGACTAATCGATACGAAATGCGA 546
Query 394 TCGAAACCGAGATGTGTTGAAGGTGTTTATGTACAATCTGCCCTCTGAATTTCACTTTGG 453
|||| || |||||||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 547 TCGAGACAGAGATGTGTTGAAGGTGTTTATGTACGATCTACCCTCTGAGTTTCACTTTGG 606
Query 454 GATATTGAATTGGCACAAAACAGGATCTGAGATTTGGCCAAATGTCAAGAACATTAGTAC 513
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 607 GATATTGAATTGGCACAAAAAAGGATCTGAGATTTGGCCAAATGTCAACAACATTAGTAC 666
Query 514 AATCCCATCTTATCCTGGTGGGTTAAATCGGCAGCACAGTGTAGAGTATTGGCTTACACT 573
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 667 AATCCCATCTTATCCTGGTGGGTTAAATCGTCAACACAGTGTAGAGTATTGGCTAACACT 726
Query 574 TGATCTT-TTAGCTTCAGAGACACCTGACATCAAGAGACCTTGTAGTAGTGCAGCAATTA 632
|||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 727 TGAT-TTATTAGCTTCAGAGACACCTGAAATCAAGAGACCTTGTAGTAGTGCAGCTATTA 785
Query 633 GAGTGAAGAACTCTAATGAAGCTGACATAGTTTTCGTGCCTTTCTTTGCTTCGTTGAGTT 692
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 786 GAGTGAAGAACTCTAATGAAGCTGATATAGTTTTCGTGCCTTTCTTTGCTTCGTTGAGTT 845
Query 693 ACAATCGCAAATCTAAGCTCCGTGGGAACGAAACCATCAGTGGTGATAGATTGTTGCAGG 752
||||||| ||||| ||||||||||| |||||||| | ||||| ||||||||||||||| |
Sbjct 846 ACAATCGGAAATCGAAGCTCCGTGGAAACGAAACAAGCAGTGATGATAGATTGTTGCAAG 905
Query 753 AAAGATTAGTTGAGTTCTTGAAAAGTCAAGATGAGTGGAAAAGATTTCATGGGAAAGATC 812
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 906 AAAGATTAGTTGAGTTCTTGAAAAGTCAAGATGAGTGGAAAAGATTTGATGGGAAAGATC 965
Query 813 ATCTGATAATAGCTCATCATCCAAACAGTTTGCTCTATGCAAGAAACTTTCTTGGATCCG 872
|| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 966 ATTTGATAGTAGCTCACCATCCAAACAGTTTGCTCTATGCAAGAAACTTTCTTGGATCAG 1025
Query 873 CAATGTTTGTTCTCTCGGATTTCGGAAGGTATTCATCTGCGGTTGCCAATCTTGAGAAAG 932
||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 1026 CAATGTTTGTTCTTTCGGATTTCGGAAGGTATTCGTCTGCTATCGCCAATCTTGAGAAAG 1085
Query 933 ATATCATTGCGCCTTACTTGCACCTCGTTAAGACTGTCTCTAACAATGAGTCAGCACCGT 992
||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||| |||
Sbjct 1086 ATATCATTGCGCCTTACGTGCACGTCGTTAAGACTATCTCTAACAACGAGTCAGCTTCGT 1145
Query 993 TTGAGAAGCGTCCTGTATTGGCATATTTCCAAGGAGCAATCTATAGAAAAGATGGTGGAA 1052
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1146 TTGAGAAGCGTCCTGTATTGGCATATTTCCAAGGAGCTATCTATAGAAAAGATGGTGGAA 1205
Query 1053 CTATTCGTCAAGAACTGTATAACCTTCTTAAAGATGAGAAAGACGTTCACTTTGCATTTG 1112
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1206 CTATTCGTCAAGAACTGTATAACCTTCTGAAAGATGAGAAAGATGTTCACTTTGCATTTG 1265
Query 1113 GAACTGTTAGAAGGAA-TGGGACTAAACAAACTGGTAAAGGAATGGCTTCCTCGAAGTTT 1171
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GAACTGTTAGA-GGAAATGGGACTAAACAAACTGGTAAAGGAATGGCTTCCTCGAAGTTT 1324
Query 1172 TGTCTCAATATCGCGGGTGACACTCCTTCATCTAACCGTCTTTTCGATGCCATTGTAAGC 1231
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1325 TGTCTCAATATCGCGGGTGACACTCCTTCCTCTAACCGTCTTTTCGATGCCATTGTGAGC 1384
Query 1232 CATTGTGTTCCGGTTATAATCAGTGATCAGATTGAGCTTCCGTTTGAAGATACTCTAGAT 1291
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1385 CATTGTGTTCCGGTTATAATCAGTGATCAGATTGAGCTTCCATTTGAAGATACTCTTGAT 1444
Query 1292 TATTCGGGTTTCTCCGTGTTTGTGCATGCTTCTGAAGCTGTAAAGAAAGGGTTTTTGGTG 1351
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1445 TATTCGGGTTTCTCCGTGTTTGTGCATGCTTCTGAAGCTGTAAAGAAAGAGTTCTTGGTG 1504
Query 1352 AATCTTCTCAGAGGGATAACAGAGGATCAGTGGAAGAAGAAGTGGGGGAGATTGAAAGAG 1411
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 AATATTCTCAGAGGGATAACAGAGGATCAGTGGAAGAAGAAGTGGGGGAGATTGAAAGAG 1564
Query 1412 GTTGCTGGGTGTTTCGAGTATCGCTTTCCTTCGCACCCGGGAGATTCTGTGAATATGATT 1471
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1565 GTTGCTGGGTGTTTTGAGTATCGCTTTCCTTCGCAAGTTGGAGATTCTGTGAATATGATT 1624
Query 1472 TGGTCAGCGGTTTCACATAAGCTTTCTTCACTTCGGTTTGATGTCCATAGAAAGAATCGG 1531
|||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1625 TGGTCAGCGGTTTCGCATAAGCTTTCTTCACTTCAGTTTGATGTTCATAGAAAGAATCGC 1684
Query 1532 TACCGTAGATCTGAAATGTTTGATAGAAACCGATCGAGTTAAGATCATATATGTGAAA 1589
|||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct 1685 TACCGTAGATCTGAAATGTTTGATAGAAACGGTTCGAGTTAAGATCATGTATGTGAAA 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78463451835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5