BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476606
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74700.1 | Symbols: NUZ, TRZ1 | tRNAse Z1 | chr1:28065266-28... 1428 0.0
> AT1G74700.1 | Symbols: NUZ, TRZ1 | tRNAse Z1 | chr1:28065266-28067217
FORWARD LENGTH=1009
Length=1009
Score = 1428 bits (773), Expect = 0.0
Identities = 851/889 (96%), Gaps = 3/889 (0%)
Strand=Plus/Plus
Query 1 AACAGTGAGATGGAGAAGAAGAAAGCAATGCAAATCGAAGGTTATCCGATCGAGGGATTG 60
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 71 AACAGTGAGATGGAGAAGAAGAAAGCAATGCAAATTGAAGGTTACCCGATCGAGGGATTG 130
Query 61 TCGATTGGTGGGCACGAGACGTGCATCATTTTTCCATCTCTTCGGATAGCTTTCGACATT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 131 TCGATTGGTGGGCACGAGACGTGCATCATATTTCCATCTCTTCGGATAGCTTTCGACATT 190
Query 121 GGTCGTTGCCCACATCGCGCAATTTCTCAAGACTTCCTCTTTATCTCTCACTCTCACATG 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 191 GGTCGTTGCCCACATCGCGCAATTTCTCAAGACTTCCTCTTCATCTCTCACTCTCACATG 250
Query 181 GATCACATCGGTGGATTACCAATGTATGTTGCGACTAGAGGCTTATACAAAATGAAGCCT 240
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 251 GATCATATCGGTGGATTACCAATGTATGTTGCTACTAGAGGCTTGTACAAAATGAAGCCT 310
Query 241 CCAACGATTATAGTACCCAAATCCATTAAAGAAACTGTCGAGAGTTTGTTCGAAGTTCAC 300
|||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||
Sbjct 311 CCAACGATTATAGTACCCGCATCCATTAAAGAAACTGTTGAGAGTTTATTCGAAGTTCAC 370
Query 301 AGAAAGTTAGATTCTTCAGAGCTAAAGCACAATCTTGTTGGCTTGGACATAGGAGAGGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 371 AGAAAGTTAGATTCTTCAGAGCTAAAGCACAATCTTGTTGGCTTGGACATAGGGGAGGAG 430
Query 361 TTTATTATAAGGAAAAATCTTAAAGTGAAAGCCTTTAAGACATACCATGTCATCCAAAGC 420
||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct 431 TTTATTATAAGGAAAGATCTCAAAGTCAAAGCCTTTAAGACATTCCATGTCATCCAAAGC 490
Query 421 CAGGGTTATGTAGTGTATTCAACTAAACATAAACTCAAGCAGGAATATATTGGCCTGTCT 480
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||
Sbjct 491 CAGGGTTATGTAGTGTATTCAACTAAATATAAACTCAAGAAGGAATATATTGGCCTATCT 550
Query 481 GGAAATGAAATTAAGAACTTGAAGGCTTCAGGTGTTGAGATTACAGACAGCATAACAACT 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 551 GGAAATGAAATTAAGAACTTGAAGGTTTCAGGTGTTGAGATTACAGACAGCATAATAACT 610
Query 541 CCTGAAGTTGCTTTTACGGGAGATACAACGGCAGATTTTGTAGTTGATGAAAGTAATGCT 600
|||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 611 CCTGAAGTTGCTTTTACGGGAGATACAACGTCGGATTTTGTAGTTGATGAAACTAATGCT 670
Query 601 GATGCTCTCAAGGCTAAGGTTCTCGTCATGGAGAGCACATTTCTTGATGATTCGGTATCC 660
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GATGCTCTCAAGGCAAAGGTTCTCGTCATGGAGAGCACATTTCTTGATGATTCGGTATCG 730
Query 661 GTAGAGCATGCGAGAGATTATGGACATATCCATTTATCTGAGATAGTTAATCATGCT-AC 719
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 731 GTAGAGCATGCGAGAGATTATGGACATATCCATATATCTGAGATAGTAAATCATGCTGA- 789
Query 720 AAAGTTTGAAAACAAAGCAATCCTGCTAATCCACTTTTCGGCCCGGTATACAGTGAAGGA 779
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 790 AAAGTTTGAAAACAAAGCAATCCTGCTAATCCACTTTTCGGCTCGGTATACAGTGAAGGA 849
Query 780 AATCGAAGATGCGGTTTCTGCATTGCCTCCACCTTTAGAGGGTCGTGTGTTTGCACTAAC 839
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 850 AATCGAAGATGCGGTTTCTGCATTGCCTCCACCTTTAGAGGGACGTGTGTTTGCACTAAC 909
Query 840 ACAAGGATTCTAAACAGTAAAAACACTCTTGTAGATTTTACACACTTTT 888
|||||||||||||||| || || ||||||| ||| ||||||| ||||||
Sbjct 910 ACAAGGATTCTAAACATTATAA-CACTCTTATAGGTTTTACATACTTTT 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5