BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476611
Length=2001
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74740.1 | Symbols: CPK30, CDPK1A, ATCPK30 | calcium-depende... 3110 0.0
AT1G18890.1 | Symbols: ATCDPK1, CPK10, CDPK1, AtCPK10 | calcium... 1604 0.0
AT5G23580.1 | Symbols: CDPK9, ATCDPK9, CPK12, ATCPK12 | calmodu... 156 9e-37
> AT1G74740.1 | Symbols: CPK30, CDPK1A, ATCPK30 | calcium-dependent
protein kinase 30 | chr1:28079946-28082644 REVERSE LENGTH=2047
Length=2047
Score = 3110 bits (1684), Expect = 0.0
Identities = 1851/1930 (96%), Gaps = 17/1930 (1%)
Strand=Plus/Plus
Query 81 AAAACTTCTTCAAATTACCCTCTTCATTA-TCTTCTGCTGAG-TTC-AAAACTCAGCCAT 137
|||||||||| ||| ||| ||||||||| |||||||||||| ||| |||||||||||||
Sbjct 111 AAAACTTCTTTAAACTACTTTCTTCATTATTCTTCTGCTGAGTTTCAAAAACTCAGCCAT 170
Query 138 GGGTAATTGCATCGCCTGCGTCAAGTTTGACCCAGAAAACTCAAAACCAAACCAGAAGAA 197
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 171 GGGTAATTGTATCGCCTGCGTCAAGTTTGACCCAGACAACTCAAAACCAAACCAGAAGAA 230
Query 198 GAAGA-CTCCACGACCACGGAAACCAAACTTC-TACGAAGATCCCGATGGTTTAAGAACT 255
||| | ||||||| |||| ||| |||| | ||||| |||||||||||||||||||||
Sbjct 231 GAA-ACCTCCACGGGGACGGCAACGAAAC-CCATACGACGATCCCGATGGTTTAAGAACT 288
Query 256 CACGCACCGTTACGTGTGATCCCTATGAGCCATCAATCTCAGATCAGCGACAAGTATATC 315
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 289 CACGCACCGTTACGTGTGATTCCTATGAGCCATCAATCTCAGATCAGCGACAAGTACATC 348
Query 316 CTCGGACGAGAACTCGGTCGCGGCGAATTCGGAATCACCTATCTTTGTACAGACAGAGAG 375
| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 349 TTAGGACGAGAACTCGGTCGCGGCGAATTCGGAATCACGTATCTTTGTACAGATAGAGAG 408
Query 376 ACTCGTGAAGCTTTAGCTTGCAAATCAATCTCCAAGAGAAAGCTCCGAACCGCCGTCGAC 435
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 ACTCGTGAAGCTTTAGCTTGCAAATCAATCTCCAAGAGAAAGCTCCGAACCGCCGTCGAT 468
Query 436 GTGGAAGACGTCCGCCGTGAAGTCACGATCATGTCAACTCTCCCGGAACATCCAAACGTT 495
|||||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 469 GTGGAAGACGTCCGTCGTGAAGTCACGATCATGTCAACTTTACCGGAACACCCAAACGTT 528
Query 496 GTGAAACTCAAAGCGACTTATGAGGACAACGAGAACGTGCATCTTGTGATGGAGCTTTGT 555
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 529 GTGAAACTTAAAGCGACTTATGAGGATAACGAGAACGTGCATCTTGTGATGGAGCTTTGT 588
Query 556 GAAGGAGGTGAGCTTTTTGATCGGATTGTTGCGAGAGGACATTATACAGAGCGTGCGGCG 615
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 589 GAAGGAGGTGAGCTTTTTGATCGGATTGTTGCCAGAGGACATTATACAGAGCGTGCGGCG 648
Query 616 GCTACCGTCGCGAGGACGATCGCGGAGGTTGTGAGGATGTGTCATGTCAATGGTGTTATG 675
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GCTACCGTCGCGAGAACGATCGCGGAGGTTGTGAGGATGTGTCATGTCAATGGTGTTATG 708
Query 676 CATAGAGATTTGAAGCCTGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCTGCACTT 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CATAGAGATTTGAAGCCTGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCTGCACTT 768
Query 736 AAGGCTATTGATTTTGGTTTATCTGTGCTCTTTAAACCTGGGGAGAGGTTTACAGAGATT 795
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 769 AAGGCTATTGATTTTGGTTTATCTGTTCTCTTTAAACCTGGAGAGAGGTTTACAGAGATT 828
Query 796 GTAGGAAGTCCTTATTATATGGCTCCAGAAGTGTTGAAGAGAAATTATGGACCAGAGGTT 855
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GTTGGAAGTCCTTATTATATGGCTCCAGAAGTGTTGAAGAGAAATTATGGACCAGAGGTT 888
Query 856 GATGTGTGGAGTGCTGGAGTTATCCTCTACATCTTGCTCTGTGGTGTTCCTCC-TTTCTG 914
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 889 GATGTGTGGAGTGCTGGAGTTATCCTCTACATCTTGCTTTGTGGTGTTCCTCCGTTT-TG 947
Query 915 GGCAGAGACTGAACAAGGTGTGGCTCTTGCAATCTTGAGGGGAGTTCTTGATTTTAAGAG 974
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 948 GGCAGAGACTGAACAAGGTGTGGCTCTTGCCATCTTGAGGGGAGTTCTTGATTTTAAGAG 1007
Query 975 AGATCCTTGGTCGCAGATATCAGAGAGCGCAAAGAGCCTTGTTAAGCAGATGTTGGAACC 1034
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1008 AGATCCTTGGTCGCAGATATCAGAGAGCGCAAAGAGCCTTGTGAAGCAGATGTTGGAACC 1067
Query 1035 TGATGCCACTAAGCGTTTGACTGCTCAGCAAGTTCTTGATCACCCTTGGATACAAAATGC 1094
|||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1068 TGATTCAACTAAGCGTTTGACTGCTCAGCAAGTTCTTGATCACCCTTGGATACAGAATGC 1127
Query 1095 TAAGAAAGCTCCAAATGTTCCTTTAGGGGATATTGTTAGGTCAAGATTGAAGCAATTCTC 1154
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1128 AAAGAAAGCTCCAAATGTTCCTTTAGGGGATATTGTTAGGTCAAGGTTGAAGCAATTCTC 1187
Query 1155 CATGATGAATAGATTGAAAAAGAAAGCTCTGCGTGTTATCGCGGAACACTTGTCTCTTCA 1214
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1188 CATGATGAATAGATTGAAAAAGAAAGCTCTGCGTGTTATCGCCGAACACTTGTCTATTCA 1247
Query 1215 AGAAGTTGAAGTGATCAGAAACATGTTTACACTGATGGATGATGACAACGACGGTAAAAT 1274
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1248 AGAAGTTGAAGTGATCAGAAACATGTTTACGCTGATGGATGATGACAACGACGGTAAAAT 1307
Query 1275 ATCATATCTAGAACTCAGAGCTGGACTCCGGAAAGTCGGTTCACAACTGGGTGAACCAGA 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 ATCATATCTAGAACTCAGAGCTGGACTCCGGAAAGTCGGTTCACAACTGGGTGAACCAGA 1367
Query 1335 GATCAAATTGTTGATGGAAGTGGCGGATGTTAACGGAAATGGATGCCTAGACTATGGAGA 1394
|||||||||||| |||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1368 GATCAAATTGTTAATGGAAGTGGCGGATGTTAATGGAAATGGATGCTTGGACTATGGAGA 1427
Query 1395 GTTTGTAGCAGTGATAATTCACTTGCAGAAGATGGAGAATGATGAGCATTTCAGACAAGC 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 GTTTGTAGCAGTGATAATTCACTTGCAGAAGATGGAGAATGATGAGCATTTCAGACAAGC 1487
Query 1455 TTTTATGTTCTTTGACAAAGATGGAAGTGGATACATCGAATCAGAAGAACTACGTGAAGC 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 TTTTATGTTCTTTGACAAAGATGGAAGTGGATACATCGAATCAGAAGAACTACGTGAAGC 1547
Query 1515 TTTAACCGACGAGTTAGGTGAACCAGACAACAGCGTTATAATCGATATAATGCGTGAAGT 1574
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1548 TTTAACCGACGAGTTAGGTGAACCAGACAACAGTGTTATAATCGATATAATGCGTGAAGT 1607
Query 1575 CGACACTGACAAGGACGGACGAATAAACTACGATGAGTTTGTGGTGATGATGAAAGCTGG 1634
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1608 CGACACTGACAAGGACGGAAAAATAAACTATGATGAGTTTGTGGTGATGATGAAAGCTGG 1667
Query 1635 AACTGATTGGAGAAAGGCATCAAGACAATACTCAAGAGAGAGGTTTAAAAGCTTAAGCTT 1694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 AACTGATTGGAGAAAGGCATCAAGACAATACTCAAGAGAGAGGTTTAAAAGCTTAAGCTT 1727
Query 1695 GAACTTGATGAAAGATGGGTCAATGCATCTACACGACGCACTCACTGGACAATCTATTGC 1754
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 AAACTTGATGAAAGACGGGTCAATGCATCTACACGACGCACTCACTGGACAATCTATTGC 1787
Query 1755 AGTTTGATCTTTACACTTGTTTATCACGAAAACAGAAGCAATCTGATG-CTG-TTTT-TT 1811
||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||
Sbjct 1788 AGTTTGATCTTTACACTTGTTTATCACCAAAACAGAAGCAATCTGATGGCTGCTTTTCTT 1847
Query 1812 ACACGTTCAAGAAGGGttttttttCTGGGCTTTTTTCAGATGTGATTTTGGCTTACTTCA 1871
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1848 ACACGTTCATGAAGGGTTTTTTT-CTGGGCTTTTTTCAGATGTGATTTTGGCTTACTTCA 1906
Query 1872 CTTTGCTTCTAGAGATTCttttttttttttGGTTTTGGGGAAGTTGGAAATTTGTAATTT 1931
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1907 CTTTGTTTCTAGAGATTCTTTTTTTT----GGTTTTGGGGAAGTTGGAAATTTGTAATTT 1962
Query 1932 GTTGGCGTAGTTAGGCTTTTCATTGGAGCATGAATGTATTTGTATGTAATGTTTGTTTAA 1991
|| ||||||||||||||||||| ||||| ||||||| || |||||||||| |||||||||
Sbjct 1963 GTGGGCGTAGTTAGGCTTTTCACTGGAGAATGAATGAATGTGTATGTAATATTTGTTTAA 2022
Query 1992 TTGTTATAAA 2001
|| |||||||
Sbjct 2023 TTATTATAAA 2032
Score = 122 bits (66), Expect = 9e-27
Identities = 78/83 (94%), Gaps = 4/83 (5%)
Strand=Plus/Plus
Query 1 AATTTTACGAAAAGGTCGAAACTTTCTTCAGCTAAACCCGTGTTTCCTTCCTCTTCTCTG 60
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 1 AATTTTACGAAAAGGTCGAAACTTTCTTCAGCTGAACCCGTG--T--TTCCTCTTCTCTG 56
Query 61 CAACTCACCGGTTCGCCGGAAAA 83
|||||||||||||||||||||||
Sbjct 57 CAACTCACCGGTTCGCCGGAAAA 79
> AT1G18890.1 | Symbols: ATCDPK1, CPK10, CDPK1, AtCPK10 | calcium-dependent
protein kinase 1 | chr1:6522764-6525962 REVERSE
LENGTH=2568
Length=2568
Score = 1604 bits (868), Expect = 0.0
Identities = 1321/1540 (86%), Gaps = 30/1540 (2%)
Strand=Plus/Plus
Query 270 TGTGATCCCTATGAGCCATCAATCTCAGATCAGCGACAAGTATATCCTCGGACGAGAACT 329
||| |||||||||||| ||||| |||||||||||||||| || ||| | || || ||| |
Sbjct 373 TGTAATCCCTATGAGCAATCAAACTCAGATCAGCGACAAATACATCTTAGGTCGTGAATT 432
Query 330 CGGTCGCGGCGAATTCGGAATCACCTATCTTTGTACAGA-CAGAGAGACTCGTGAAGCTT 388
||||| ||||||||||||||||| || || ||||| || | | || || | |||||||
Sbjct 433 AGGTCGAGGCGAATTCGGAATCACTTACCTCTGTACTGATC-GTGAAACCCACGAAGCTT 491
Query 389 TAGCTTGCAAATCAATCTCCAAGAGAAAGCTCCGAACCGCCGTCGACGTGGAAGACGTCC 448
||||||||||||| || || ||| ||||||| ||||| || ||||| | |||||||| |
Sbjct 492 TAGCTTGCAAATCGATTTCAAAGCGAAAGCTTCGAACAGCTGTCGATATCGAAGACGTTC 551
Query 449 GCCGTGAAGTCA-CGATCATGTCAACTCTCCCGGAACATCCAAACGTTGTGAAACTCAAA 507
| ||||| || | |||| ||||| ||| | || || ||||||||||| || || || ||
Sbjct 552 GTCGTGAGGT-AGCGATTATGTCTACTTTACCTGAGCATCCAAACGTAGTTAAGCTTAAG 610
Query 508 GCGACTTATGAGGACAACGAGAACGTGCATCTTGTGATGGAGCTTTGTGAAGGAGGTGAG 567
|| | ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 611 GCTAGTTATGAGGATAACGAGAACGTGCATCTGGTTATGGAGCTTTGTGAAGGAGGTGAG 670
Query 568 CTTTTTGATCGGATTGTTGCGAGAGGACATTATACAGAGCGTGCGGCGGCTACC-GTCGC 626
|||||||||||||||||||| ||||||||||| || |||||||| || || | | || ||
Sbjct 671 CTTTTTGATCGGATTGTTGCTAGAGGACATTACACGGAGCGTGCTGCTGC-AGCTGTTGC 729
Query 627 GAGGACGATCGCGGAGGTTGTGAGGATGTGTCA-TGTCAATGGTGTTATGCATAGAGATT 685
||| ||||| || |||||||||| ||||||||| | | ||||| ||||||||| ||||||
Sbjct 730 GAGAACGATTGCTGAGGTTGTGATGATGTGTCACTCT-AATGGAGTTATGCATCGAGATT 788
Query 686 TGAAGCCTGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCTGCACTTAAGGCTATTG 745
|||| ||||||||||||||||||||||| || |||||||||||| |||| ||||||||||
Sbjct 789 TGAAACCTGAGAATTTCTTGTTTGCTAATAAAAAGGAGAATTCTCCACTAAAGGCTATTG 848
Query 746 ATTTTGGTTTATCTGTGCTCTTTAAACCTGGGGAGAGGTTTACAGAGATTGTAGGAAGTC 805
||||||| || |||||| |||| |||||||| || | |||||||||||||||||||||||
Sbjct 849 ATTTTGGCTTGTCTGTGTTCTTCAAACCTGGAGATAAGTTTACAGAGATTGTAGGAAGTC 908
Query 806 CTTATTATATGGCTCCAGAAGTGTTGAAGAGAAATTATGGACCAGAGGTTGATGTGTGGA 865
| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 909 CGTATTATATGGCTCCAGAAGTGTTGAAGAGAGATTATGGACCAGGGGTTGATGTGTGGA 968
Query 866 GTGCTGGAGTTATCCTCTACATCTTGCTCTGTGGTGTTCCTCC-TTTCTGGGCAGAGACT 924
|||| |||||||| |||| ||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 969 GTGCCGGAGTTATTATCTATATCTTGCTCTGTGGTGTTCCTCCGTTT-TGGGCTGAGACT 1027
Query 925 GAACAAGGTGTGGCTCTTGCAATCTTGAGGGGAGTTCTTGATTTTAAGAGAGATCCTTGG 984
||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||
Sbjct 1028 GAACAAGGTGTTGCTCTTGCGATCTTGCGGGGAGTTCTTGATTTTAAGAGAGACCCTTGG 1087
Query 985 TCGCAGATATCAGAGAGCGCAAAGAGCCTTGTTAAGCAGATGTTGGAACCTGATGCC-AC 1043
| |||||||||||||| || ||||||||||| |||||||||||||| |||||| || ||
Sbjct 1088 CCTCAGATATCAGAGAGTGCCAAGAGCCTTGTGAAGCAGATGTTGGATCCTGAT-CCGAC 1146
Query 1044 TAAGCGTTTGACTGCTCAGCAAGTTCTT-GATCACCCTTGGATACAAAATGCTAAGAAAG 1102
|||||| || |||||||||||||| || | |||||| |||||||| ||||| |||||||
Sbjct 1147 TAAGCGGTTAACTGCTCAGCAAGTG-TTAGCTCACCCATGGATACAGAATGCAAAGAAAG 1205
Query 1103 CTCCAAATGTTCCTTTAGGGGATATTGTTAGGTCAAGATTGAAGCAATTCTCCATGATGA 1162
|||| |||||||||||||| ||||| || || || || |||||||| ||||| |||||||
Sbjct 1206 CTCCCAATGTTCCTTTAGGAGATATAGTCAGATCTAGGTTGAAGCAGTTCTCTATGATGA 1265
Query 1163 ATAGATTGAAAAAGAAAGCTCTGCGTGTTATCGCGGAACACTTGTCTCTTCAAGAAGTTG 1222
| ||||| |||||||||| ||| ||||| || ||||| ||||||||| ||||||| ||||
Sbjct 1266 ACAGATTCAAAAAGAAAGTTCTTCGTGTAATTGCGGAGCACTTGTCTATTCAAGAGGTTG 1325
Query 1223 AAGTGATCA-GAAACATGTT-TACACTGATGGATGATGACAACGACGGTAAAATATCATA 1280
||||||| | ||| |||||| | ||||||||||||||||||| || ||||||||| | ||
Sbjct 1326 AAGTGATAAAGAA-CATGTTCT-CACTGATGGATGATGACAAGGATGGTAAAATAACTTA 1383
Query 1281 TCTAGAACTCAGAGCTGGACTCCGGAAAGTCGGTTCACAACTGGGTGAACCAGAGATCAA 1340
| ||||||| |||||| || | ||| |||||||||||||| |||||||||||||||||
Sbjct 1384 CCCGGAACTCAAAGCTGGGCTTCAGAAGGTCGGTTCACAACTTGGTGAACCAGAGATCAA 1443
Query 1341 ATTGTTGATGGAAGTGGCGGATGTTAACGGAAATGGATGCCTAGACTATGGAGAGTTTGT 1400
| |||||||||||||||||||||| | |||||||| | || || ||||||||||||||
Sbjct 1444 AATGTTGATGGAAGTGGCGGATGTCGATGGAAATGGGTTTCTGGATTATGGAGAGTTTGT 1503
Query 1401 AGCAGTGATAATTCACTTGCAGAAGATGGAGAATGATGAGCATTTCAGACAAGCTTTTAT 1460
||| ||||||||||||||||||||||| ||||||||||| | ||||| || |||||||||
Sbjct 1504 AGCTGTGATAATTCACTTGCAGAAGATAGAGAATGATGAACTTTTCAAACTAGCTTTTAT 1563
Query 1461 GTTCTTT-GACAAAGATGGAAGTGGATACATCGAA-TCAGAAGAACTACGTGAAGCTTTA 1518
||| ||| ||||||||||||||| |||||| ||| | || || ||||| |||||||||
Sbjct 1564 GTT-TTTCGACAAAGATGGAAGTACATACATTGAACTT-GATGAGCTACGGGAAGCTTTA 1621
Query 1519 ACCGACGAGTTAGGTGAACCAGACAACAGCGTTATAATCGATATAATGCGTGAAGTCGAC 1578
| || |||||||| || |||||| ||| ||| ||| ||| || ||||||||||| |||
Sbjct 1622 GCGGATGAGTTAGGCGAGCCAGACGCCAGTGTTCTAAGCGACATCATGCGTGAAGTTGAC 1681
Query 1579 ACTGACAAGGACGGACGAATAAACTACGATGAGTTTGTGGTGATGATGAAAGCTGGAACT 1638
||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||
Sbjct 1682 ACTGACAAGGACGGACGTATAAACTATGATGAGTTTGTGACGATGATGAAAGCTGGAACT 1741
Query 1639 GATTGGAGAAAGGCATCAAGACAATACTCAAGAGAGAGGTTTAAAAGCTTAAGC-TTGAA 1697
|| |||||||||||||| |||||||| |||||||||||||| |||||||||||| || ||
Sbjct 1742 GACTGGAGAAAGGCATCGAGACAATATTCAAGAGAGAGGTTCAAAAGCTTAAGCATT-AA 1800
Query 1698 CTTGATGAAAGATGGGTCAATGCATCTACACGACGCACTCACTGGACAATCTATTGCAGT 1757
||||||||||||||||||| ||||||| || ||||| |||||||||||| || || | ||
Sbjct 1801 CTTGATGAAAGATGGGTCATTGCATCTCCATGACGCTCTCACTGGACAAACTGTTCCTGT 1860
Query 1758 TTGATCTTTACACTTGTTTATCACGAAAA-CAGAAGCAAT 1796
|| | |||| | ||| ||||| |||| |||| |||||
Sbjct 1861 TTAAA-TTTATTC--GTT-ATCACCAAAAACAGA-GCAAT 1895
> AT5G23580.1 | Symbols: CDPK9, ATCDPK9, CPK12, ATCPK12 | calmodulin-like
domain protein kinase 9 | chr5:7950202-7952532 REVERSE
LENGTH=1758
Length=1758
Score = 156 bits (84), Expect = 9e-37
Identities = 318/427 (74%), Gaps = 32/427 (7%)
Strand=Plus/Plus
Query 517 GAGGACAACGAGAACGTGCATCTTGTGATGGAGCTTTGTGAAGGAGGTGAGCTT-TTTGA 575
||||||| | | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 370 GAGGACACCAAAAACGTGCATCTTGTGATGGAGCTTTGTGAAGGAGGTGAG-TTGTTTGA 428
Query 576 TCGGATTGTTGC-GAGAGGACATTATACAGAGCGTGCGGCGGCTAC-CGTCGCGAGGACG 633
| | ||||| | |||||| ||||| | || | | || |||| | | | || ||
Sbjct 429 TAGAATTGT-GAAGAGAGGTCATTACAGTGAAAGAGAAGCTGCTAAGCTTATCAAG-ACC 486
Query 634 ATCGC-GGAGGTTGT-GAGGATGTGTCA-TGTCAATGGTGTTATGCATAGAGAT-TTGAA 689
|| | || |||||| |||| |||||| | || ||||||| | ||||||||| || ||
Sbjct 487 ATTGTTGG-GGTTGTTGAGGC-GTGTCACTCTCT-TGGTGTTGTTCATAGAGATCTT-AA 542
Query 690 GCCTGAGAATTTCTTGTTTGCTAA--CAAGAAGGAGAATTCTGCACTTAAGGCTATTGAT 747
||||||||||||||||||| || | || | ||| | || | ||||| ||| |||
Sbjct 543 GCCTGAGAATTTCTTGTTTTCTTCTTCT-GATGAAGA-TGCTTCTCTTAAATCTACTGAC 600
Query 748 TTTGGTTTATCTGTGCTCTTTAAACCTGGGGAGAGG-TTTACAGAGATT-GTAGGAAGTC 805
||||| | ||||| ||| | ||| || || || ||| | || | | || || |||
Sbjct 601 TTTGGCCTCTCTGTTTTCTGCACACCAGGAGA-AGCATTTTCGGA-ACTCGTTGGTAGTG 658
Query 806 CTTATTATATGGCTCCAGAAGTGTTGA-AGA-GAAATTATGGACCAGAG-GTTGATGTGT 862
|||| ||| |||| || || || || | | | | | |||||| || || || || || |
Sbjct 659 CTTACTATGTGGCACCTGAGGTTTT-ACATAAGCA-TTATGGTCCTGAATGT-GACGTAT 715
Query 863 GGAGTGCTGGAGTTATCCTCTACAT-CTTGCTC-TGTGGTGTTCCTCCTTTCTGGGCAGA 920
||||||||||||||||||||||||| || || |||||| |||||||||| ||||| ||
Sbjct 716 GGAGTGCTGGAGTTATCCTCTACATTCT--CTTATGTGGTTTTCCTCCTTTTTGGGCTGA 773
Query 921 GACTGAA 927
|| ||||
Sbjct 774 GAGTGAA 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99146076375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5