BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476614
Length=1892
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74780.1 | Symbols: | Nodulin-like / Major Facilitator Supe... 2817 0.0
> AT1G74780.1 | Symbols: | Nodulin-like / Major Facilitator Superfamily
protein | chr1:28095815-28098185 FORWARD LENGTH=1976
Length=1976
Score = 2817 bits (1525), Expect = 0.0
Identities = 1782/1905 (94%), Gaps = 21/1905 (1%)
Strand=Plus/Plus
Query 1 TTTTCCGGCGAGGAAGGTGGTGATAATTGGCGGCGATGGAGATTTTAAGGACAAAATGGG 60
|||||||||||||||||||||| |||||||||||||||||||| |||| || |||||||
Sbjct 67 TTTTCCGGCGAGGAAGGTGGTGGTAATTGGCGGCGATGGAGATACTAAGAACGAAATGGG 126
Query 61 TGGCTATGGCGGCTAGTATATGGATACAATGCACAAGCGGCGCTTCCTACACCTTCGGAA 120
|||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 127 TGGCTATGACAGCTAGTATATGGATACAATGCGCAAGCGGCGCTTCCTACACCTTCGGAA 186
Query 121 TCTATTCCGCCGTCCTGAAATCGACTCAATCGTACGATCAATCCACTCTCGACACCGTCT 180
|||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 187 TCTATTCCGCTGTCCTAAAATCGACTCAATCGTACGATCAATCCACCCTCGATACCGTCT 246
Query 181 CCGTCTTCAAGGACATCGGAGCAAACGCCGGAGTTTTCTCTGGGCTTTTATACACTTACG 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 247 CAGTCTTCAAGGACATCGGAGCAAACGCCGGAGTTTTCTCTGGGCTTTTATACACATACG 306
Query 241 CTACCTCCAATCGTCGCCGTGGAC-----GG-GG-A--GGAGGCGCAGGAGGACCTTGGG 291
|||| |||||||||| |||||||| || || | |||||||| |||||||||||||
Sbjct 307 CTACGTCCAATCGTCTCCGTGGACGGGGAGGAGGAATTGGAGGCGCTGGAGGACCTTGGG 366
Query 292 TGGTGCTTGCTATTGGGGCAATTCAGTGCTTCGCTGGTTATTTTCTCATTTGGGCTTCCG 351
||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 367 TGGTGCTTGCTGTTGGGGCAATTCAGTGCTTCGCCGGTTACTTTCTCATTTGGGCTTCTG 426
Query 352 TTACCGGACGTATTAGGAAGCCGCCGGTGCCGCTGATGTGCCTGTTTATGTTCTTAGCAG 411
||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 427 TTACCGGACTTATTAGAAAGCCTCCGGTGCCGCTGATGTGCCTGTTTATGTTCTTAGCAG 486
Query 412 CTCAGTCACAAACGTTCTTTAATACGGCTAATGTTGTTAGTGCCGTTGAGAATTTCGCTG 471
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CTCAGTCGCAAACGTTCTTCAATACGGCTAATGTTGTTAGTGCCGTTGAGAATTTCGCTG 546
Query 472 ACTATGGTGGTACAGCCGTTGGGATTATGAAGGGTTTTCTTGGTCTAAGTGGAGCGATAC 531
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 547 ACTATGGTGGTACAGCCGTTGGCATTATGAAGGGTTTTCTTGGTCTAAGTGGAGCGATAC 606
Query 532 TAATTCAACTGTACGAGACATTGTGCGCTGGAGATCCGGCGAGCTTCATTCTCTTACTGG 591
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 607 TGATTCAACTGTACGAGACATTGTGCGCTGGAGATCCGGCCAGCTTCATTCTCTTACTGG 666
Query 592 CAGTAACTCCAACAGTGCTCTCACTCTTGGTCATGCCTCTGGTCAGGATCTATGAGACAA 651
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CAGTAACACCAACAGTGCTCTCACTCTTGGTCATGCCTCTGGTCAGGATCTATGAGACAA 726
Query 652 GCGTAGCCGATGATAAAAAGCATTTAAATGGTCTTTCAGCTGTATCTCTAATCATTGCAG 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 727 GCGTAGCCGATGATAAAAAGCATTTAAATGGTCTTTCAGCTGTATCTCTAATCATCGCAG 786
Query 712 CTTATCTTATGATCGTTATCATATTGAAGAACACCTTTGGTTTGTCATCGTGGGCCAATG 771
|||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 787 CTTATCTTATGATCATTATCATATTGAAGAACACTTTTGGGTTGTCATCGTGGGCCAACA 846
Query 772 TTGTCACACTTGTATGTCTAGTCGTCCTGCTTGCCTTGCCTCTACTTATTGCGAGAAGGG 831
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct 847 TTGTCACACTTGTATGTCTACTCGTCATGCTTGCCTTGCCTCTACTTATTGCGAGAAGAG 906
Query 832 CACAACGAGACAGCATGGAAAAACCAGCACCACATGAGTATTCCCCTCTGATAAGCAGTC 891
||||||||||| ||||||||||| ||| ||||||||| ||||||||||| ||||||||||
Sbjct 907 CACAACGAGACGGCATGGAAAAAACAGTACCACATGATTATTCCCCTCTCATAAGCAGTC 966
Query 892 CAAAGGCAACAACCTCCGGTAACCAAAGTTCTGAAGGCGACAGTAGAA-TAGATTCTGGT 950
||||||||||||||||||||||||||||||||||||| ||||||| || | || ||||
Sbjct 967 CAAAGGCAACAACCTCCGGTAACCAAAGTTCTGAAGGTGACAGTA-AAGTGGAAGCTGGA 1025
Query 951 CTGAGTGAGAACCTGAATCTTCTGCAAGCTATGAAAAACCTAAGCTTCTGGTTGTTGTTT 1010
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1026 CTGAGTGAGAACCTGAATCTTCTGCAAGCTATGAAAAAACTAAGCTTCTGGTTGTTATTT 1085
Query 1011 CTTGCTATGATTTGTGGAATGGGTTCTGGACTTTCGACGATAAACAACATTCGGCAAATA 1070
||||| |||||||| |||||||| ||||||||||| |||||||||||||| || ||||||
Sbjct 1086 CTTGCCATGATTTGCGGAATGGGCTCTGGACTTTCAACGATAAACAACATCCGACAAATA 1145
Query 1071 GGCGAGTCTCTTCGATACTCATCTGTTGAGATAAATTCATTGGTCTCCTTGTGGAGTATA 1130
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1146 GGTGAGTCTCTTCGATACTCATCAGTTGAGATAAATTCATTGGTCTCCTTGTGGAGTATA 1205
Query 1131 TGGAACTTTCTTGGTAGATTCGGAGCTGGTTATGCCTCAGATGCATTGCTACACAAAAAA 1190
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1206 TGGAACTTTCTCGGTAGATTTGGAGCTGGTTATGCCTCAGATGCATTGCTACACAAAAAG 1265
Query 1191 GGATGGCCACGTCCATTGCTAATGGCTGCAACACTTGGAACAATGA-CGATAGGCCATCT 1249
||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| ||
Sbjct 1266 GGATGGCCACGTCCATTGCTAATGGCTGCAACACTTGGAACGATGAGC-ATAGGCCACCT 1324
Query 1250 AATTATAGCCTCTGGTTTCCAAGGAAACCTTTATGTCGGTTCTGTTATAGTTGGCGTTTG 1309
||| |||||||||||||| |||||||| || ||||| |||||||||||||||||||||||
Sbjct 1325 AATCATAGCCTCTGGTTTTCAAGGAAATCTCTATGTTGGTTCTGTTATAGTTGGCGTTTG 1384
Query 1310 TTATGGTTCACAATGGTCTCTGATGCCTACAATCACCTCTGAACTATTTGGGGTTCGGCA 1369
|||||||||||| ||||||||||||||||||||||||||||| || || ||| |||||||
Sbjct 1385 TTATGGTTCACAGTGGTCTCTGATGCCTACAATCACCTCTGAGCTGTTCGGGATTCGGCA 1444
Query 1370 CATGGGAACCATCTTCAACACCATATCTGTGGCTAGTCCCATCGGTTCCTATATCTTCTC 1429
|||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 1445 CATGGGAACCATCTTCAATACCATATCCGTGGCTAGTCCCATTGGTTCCTATATCTTCTC 1504
Query 1430 TGTAAGATTGATTGGTTATATCTATGACAAGACTGCTTCTGGGGAAGGGAACGCATGTTA 1489
|||||||||||| ||||||||||| || ||||||||||| |||||||||||| |||||||
Sbjct 1505 TGTAAGATTGATCGGTTATATCTACGATAAGACTGCTTCCGGGGAAGGGAACACATGTTA 1564
Query 1490 TGGCTCTCACTGCTTCAGGCTGTCATTTATTATAATGGCCTCTGTTGCATTCTTCGGGTT 1549
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 1565 TGGCTCTCATTGCTTCAGGCTGTCATTTATTATAATGGCATCTGTTGCGTTCTTTGGGTT 1624
Query 1550 TCTTGTCGCCATTGTACTGTTCTTTCGGACAAAGACGCTCTATCGTCAGATTCTCGTAAA 1609
|||||||||||||||||| |||||||||||||||||||| ||||| ||||| || |||||
Sbjct 1625 TCTTGTCGCCATTGTACTATTCTTTCGGACAAAGACGCTATATCGACAGATCCTTGTAAA 1684
Query 1610 GAGATTGCATCGCCGATAGAGTTCTTGTGAATACTATACTT--G-AGAAAAAACGAATAC 1666
||| ||||||| |||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct 1685 GAGGTTGCATCATCGATAGAGTTCTTGTGAATACTATACTTTTGGAGAAAAA-CGAATAC 1743
Query 1667 CGCTTCTCTTGCTACATCCATGGTAGCTTACGATTCTCAGAGGTACACATCAATTACTTT 1726
||||||||||||||||||||||||||||| | ||| || ||||||||||||||| ||||
Sbjct 1744 TGCTTCTCTTGCTACATCCATGGTAGCTTATGCTTC-CAAAGGTACACATCAATTTCTTT 1802
Query 1727 ACCTATAAGTT-GATTGTAAGTTATGTTTGTATCAAATGTCTGTGTTTAGAGATGGGAAG 1785
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 ACCTATAAGTTTGATTGTAAGTTATGTTTGTATCAAATGTCTGTGTTTAGAGATGGGAAG 1862
Query 1786 AAAGAAAGCTGAGATCTTTGTCTCTCTTTCTTTTTTGTAGTTTCTTCCACAAATGTGAGT 1845
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1863 AAAGAAAGCTGAGATCTTTGTCTCTCTTTCTTTTT-GTAGTTTCTTCCAAAAATGTGAGT 1921
Query 1846 TTTGTGAAGTGTATAGACATCTCATAGTTTCCCAATAATGTTGAA 1890
|||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 1922 TTTGTGAATTGTATAGACATCTCAAAGTT-CCCAATAATGTTGAA 1965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93674216970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5