BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476620
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74840.1 | Symbols: | Homeodomain-like superfamily protein ... 1539 0.0
AT1G19000.1 | Symbols: | Homeodomain-like superfamily protein ... 250 2e-65
> AT1G74840.1 | Symbols: | Homeodomain-like superfamily protein
| chr1:28115897-28117405 REVERSE LENGTH=1190
Length=1190
Score = 1539 bits (833), Expect = 0.0
Identities = 1045/1143 (91%), Gaps = 31/1143 (3%)
Strand=Plus/Plus
Query 26 AAGAAAGCGCAAAGGGCAAAATCGGAAATATTATTATGGCCGACGGTAGTACTAGTTCGT 85
|||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 54 AAGAAAGCACAAGGGGCAAAATCGGAAAGATTATCATGGCCGACGGTAGTACTAGTTCTT 113
Query 86 CGGAGTCCACCAACGCCTGCTCCGGAGGCGGCACGAGAAGAGAGATTATGCTGTTCGGCG 145
|||||||||| | ||||||| | ||| ||||||| ||||||||||||||||||||||| |
Sbjct 114 CGGAGTCCACTACCGCCTGCGCTGGAAGCGGCACAAGAAGAGAGATTATGCTGTTCGGAG 173
Query 146 TCAGGGTTGTGCTTGACCCGATGAGAAAGTGCGTGAGTTTGAACAATTTGTCCGAGTATG 205
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 174 TCAGGGTTGTGCTTGACCCGATGAGAAAGTGCGTGAGTTTGAACAATCTGTCTGACTATG 233
Query 206 AGCAGACGGCGGAGACTCCAAAGATCGACGGCGAGGATAGAGATGGACAAGATATGAACA 265
| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 234 AACAGACGGCGGAGACTCCAAAGATCGACGGCGAAGATAGAGATGAACAAGATATGAACA 293
Query 266 AAACCCCCGCCGGTTACGCCTCGGCGGATGAAGCTCTTCCGATTTCTTCTTCTAACGTTA 325
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct 294 AAACCCCGGCCGGTTACGCCTCGGCGGATGAAGCTCTTCCCATGTCTTCTTCTAACGGCA 353
Query 326 ACCGCGAGAGAAAACGAGGAGTTCCATGGACTGAAGAAGAACACAAGCTGTTCTTACTTG 385
| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 354 AAATCGAGAGGAAACGAGGAGTTCCATGGACTGAAGAAGAACACAAGCTGTTCTTGCTTG 413
Query 386 GGCTGCAGAGAGTAGGTAAAGGAGATTGGAAAGGAATATCCAGAAACTTTGTCAAGAGCA 445
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 414 GGCTGCAGAGAGTCGGTAAAGGAGATTGGAAAGGAATATCAAGAAACTTTGTCAAGACCA 473
Query 446 GGACCTCTACACAAGTTGCTAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAATCTTA 505
| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 474 GAACCTCTACACAAGTTGCTAGTCATGCTCAGAAATACTTCCTCAGGCGAAGTAATCTTA 533
Query 506 ACCGTCGCCGCCGAAGATCTAGCCTTTTTGACATGACTACTGATACGGTAAATCTCCAAT 565
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 534 ACCGTCGCCGCCGAAGATCTAGCCTTTTTGACATGACTACTGATACGGT-CAT-ACCCAT 591
Query 566 CGGAAGATGAT---CAGGTGCTTATGCAGGAGAATGCATCACAATTATCTTCTCCTGTAC 622
|||||| ||| || |||||||| |||||||| |||| |||| ||||||||||||||
Sbjct 592 -GGAAGAAGATCACCAAGTGCTTATACAGGAGAACACATCTCAATCATCTTCTCCTGTAC 650
Query 623 CTGAAATCAACAACTTCTCTATACATCCGGTTATGCAAGTCTTTCCCGAGTTCCCGGTAC 682
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CGGAAATCAACAACTTCTCTATACATCCGGTTATGCAAGTCTTTCCCGAGTTCCCGGTAC 710
Query 683 CAACAGGGAATCAATCATACGGACAGCTGACTTCCTCGAATCTCATCAAGTTGGTTCCAT 742
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 711 CAACAGGGAATCAATCATACGGACAGCTTACTTCATCGAATCTCATCAATTTGGTTCCAT 770
Query 743 TAACTTTTCAATCAAGTCCTGCACCGCTCTCTCTCAACCTGTCACTAGCTTCATCTAATC 802
|||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 771 TAACTTTTCAGTCAAGTCCAGCACCGCTTTCTCTCAACCTCTCACTAGCTTCATCTAATC 830
Query 803 TTAATGAACCATCTCCTTCAATGCATTCAGCATTCAACACGATTGGAGTCGCTTAGAGCA 862
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 831 TTAATGAACCATCTCCTTCAATGCATCCAGCATTCAACACGATTGGAGTCGCTTAGAGCT 890
Query 863 TATCCGAAAGGTGAAAATCTGCAACACACCCTGTTTGTTTCTTTGTTGTACAGATAGGTC 922
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 891 TATCCTAAAGGTGAAAATCTGCAACACACCCTGTTTGTTTCTTTGCTGTACAGATAGGTC 950
Query 923 TTGACTTTGTTATAAAAA--TTCGTCAAACTCATGTATTTGGCTAAA-----T------A 969
|||||||||||||||||| ||||||||| | ||||||||||||||| | |
Sbjct 951 TTGACTTTGTTATAAAAAAATTCGTCAAATTTATGTATTTGGCTAAAAAAAATCTGTTGA 1010
Query 970 AAAGAA---TAAGAAACAGAGTTTGGAGATAGAACT-AAGTGGCTTTTTAGGGTTCATGA 1025
|||||| ||| ||||||||||||||||||| ||| |||||| ||||||||||||| |
Sbjct 1011 AAAGAAGAATAATAAACAGAGTTTGGAGATAGGACTTAAGTGGGGTTTTAGGGTTCATAA 1070
Query 1026 TCATCCTGT-TTTTTCCTTCCATGTTTGGCGGGTTGTTGTAATACTCTCTAAGTTCATTC 1084
||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1071 TCATCCTGTGTTTTTCCTTCCATGTTTGGAAG-TTGTTGTAATACTCTCTAAGTTCATTC 1129
Query 1085 GTGTGGATCTGTCAAAACTTATATATATCATGTTAACGTTATGTTT-T---ATTCATGAT 1140
|||||||||| |||||||||||| | ||||| |||||||||||||| | |||||||||
Sbjct 1130 GTGTGGATCTATCAAAACTTATA-A-ATCATATTAACGTTATGTTTGTTTTATTCATGAT 1187
Query 1141 CTC 1143
|||
Sbjct 1188 CTC 1190
> AT1G19000.1 | Symbols: | Homeodomain-like superfamily protein
| chr1:6560795-6562786 REVERSE LENGTH=1322
Length=1322
Score = 250 bits (135), Expect = 2e-65
Identities = 237/284 (83%), Gaps = 16/284 (6%)
Strand=Plus/Plus
Query 276 CGGTTACGCCTCGGCGGATGAAGCTCTTCC-GATTTCTTCTTCTAACGTTAACC-GCGAG 333
|||||||||||| || |||| ||| ||| |||||| || | | | || || ||| |
Sbjct 342 CGGTTACGCCTCCGCCAATGACGCT-GTCCAGATTTCGTC-T-T--C-TT--CCGGCGGG 393
Query 334 AGAAAACGAGGAGTTCCATGGACTGAAGAA-GAACACAAGCTGTTCTT-ACTTGGGCTGC 391
|| |||||||| ||||||||||| | |||| || || ||| |||||| | ||||| |||
Sbjct 394 AGGAAACGAGGGGTTCCATGGACAG-AGAACGAGCATAAGAGGTTCTTGA-TTGGGTTGC 451
Query 392 AGAGAGTAGGTAAAGGAGATTGGAAAGGAATATCCAGAAACTTTGTCAAGAGCAGGACCT 451
||| |||||| ||||||||||||||||||||||| ||||||||||| ||||| |||| ||
Sbjct 452 AGAAAGTAGGAAAAGGAGATTGGAAAGGAATATCAAGAAACTTTGTGAAGAGTAGGA-CT 510
Query 452 -CTACACAAGTTGCTAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAATCTTAACCGT 510
|||| ||||| ||||||||||||||||||||||||||||| |||| ||| || ||||||
Sbjct 511 CCTACTCAAGTAGCTAGTCATGCTCAGAAATACTTCCTCCGACGAACCAACCTCAACCGT 570
Query 511 CGCCGCCGAAGATCTAGCCTTTTTGACATGACTACTGATACGGT 554
||||| ||||||||||||||||||| || |||||||| |||||
Sbjct 571 CGCCGAAGAAGATCTAGCCTTTTTGATATCACTACTGAGACGGT 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5