BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476622
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74860.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2364 0.0
> AT1G74860.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G19010.1);
Has 210 Blast hits to 193 proteins in 61 species: Archae -
0; Bacteria - 9; Metazoa - 75; Fungi - 18; Plants - 58; Viruses
- 1; Other Eukaryotes - 49 (source: NCBI BLink). | chr1:28123319-28125882
FORWARD LENGTH=1598
Length=1598
Score = 2364 bits (1280), Expect = 0.0
Identities = 1492/1590 (94%), Gaps = 31/1590 (2%)
Strand=Plus/Plus
Query 1 AACCTTTTTAGCTTTTTCTTTCTTCTTGGCGAGTTCGCGACCTTGGTCGGAAAATCAACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 AACCTTTTTAGCTTTTTCTTTCTTCTTGGCGAGTTCGCGACCTTGGTCGGAAAATCAACA 81
Query 61 ATCGCTTCTCTGCAATCTCATTATCGGCGCTAATGGCTGACCAAGAGACCTTAGCGGCGT 120
||||||||||||||||| |||||||||| |||||||| |||| |||||||||||||||||
Sbjct 82 ATCGCTTCTCTGCAATCGCATTATCGGCTCTAATGGCAGACCCAGAGACCTTAGCGGCGT 141
Query 121 TGAAGAGAGCCTACGCCGATACGATACTGAACACAACGAAGGAAGCGGCGGCGCGTGTGA 180
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 142 TGAAGAGAGCCTACGCCGATACGATACTGAACACGACGAAGGAAGCGGCGGCACGTGTGA 201
Query 181 TGGTTTCTGAGAAGAAGGCGCGTAGGTATCAGCAAGAACTTGCGACGGTTAGAGATGAAG 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 202 TGGTTTCTGAGAAGAAGGCGCGTAGGTATCAGCAAGAACTTGTGACGGTTAGAAATGAAG 261
Query 241 CACTTCAGACGTTGCTTAGGCTTAAACAGATGCTTGATTCCAAGGTCAAAGAGACGGAGA 300
||||||| |||||| ||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 262 CACTTCATACGTTGGTTAGGCTTAAACAGATGCTTGATTCCAAGGTTAAGGAGACAGAGA 321
Query 301 TGCAATCCTTGAAGCAGCAACAGAAGGTTGAGGAACTTGAAGCTCAGCTTGGAGAAGCTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 TGCAATCCTTGAAGCAGCAACAGAAGGTTGAGGAACTTGAAGCTCAGCTTGGAGAAGCTG 381
Query 361 AAGATATTGTAGGAGAGCTGAGGATGGAGTTGAGAGTACTCCACAATGAGCTCAAGAAAC 420
||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 382 AAGATATTGTAGGAGAGCTGAGGTTGGAGTTGAGAGTACTTCACGATGAGCTCAAGAAAC 441
Query 421 TTACGAATGGTCAGACACATCTTAAAAGTGA-TCATGAGGAAGACCCCTGTGGGAATAAC 479
||||| ||||||||| ||||||||||| || |||||||||| ||| |||| ||||||||
Sbjct 442 TTACGGATGGTCAGAAACATCTTAAAAA-GAATCATGAGGAAAACCTCTGTTGGAATAAC 500
Query 480 CGCGATGCTGCAGTTTCTGTAGTGCCTGAGGTTTCTTGCAGTCACGGGAACACAGAACCT 539
|| |||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 501 CGTGATGCTGCAGTTTCTGTAATGCCTGAGGTTTCTTGCAGTCACGAGAACACAGAAGCT 560
Query 540 GTAGGTTTTTGCATCCCAGTGGAACAAAGTGGATCTGTGGTGGCTAATGGGATAAAAGTA 599
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 561 GTAGGTTTTTGCATCCCAGTGGAACAAAATGGATCAGTGGTGGCTAATGGGATAAAAGTA 620
Query 600 CCAG-CTTTGACTCGCATAAATAGTATTAACCGGTGTTCTTATAAAGATAACAAGGATCA 658
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CC-GTCTTTGACTCGCATAAATAGTATTAACCGGTGTTCTTATAAAGATAACAAGGATCA 679
Query 659 GTGTCACCACACTCTTCCATCTATACTGACAAAACGCAGGGAAGCTGAAGGTTTAGCTCA 718
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 680 ATGTCACTACACTCTTCCATCTATACTGACAAAACGCAGGGAAACTGAAGGTTTAGCTCA 739
Query 719 GATGATCCACGCAGTAGATAGCAGTATGGCCAATGGGGTTCTCTCGTCCTCTGTAGAAGT 778
|||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 740 GATGATCCACACAGTAGATAGCAGTATGGCCAATGGGGTTCTGTCTTCCTCTGTAGAAGT 799
Query 779 AGGAGATGTGAATGATGGAGTATGTCTTCACAAAGTTTCGTCTTGTAAAATTGTAGAGAC 838
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 800 AGGAGATGTGAATGATGGAGTATGTCTTCACGAAGTTTCGTCTTGTAAAATTGTAGAGAG 859
Query 839 CTTAGAAATGTCTGGTTGTGCTGATGCTACTGACTCCATATCTACTGTTAGAGATGGAGA 898
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 860 CTTAGAAATGTCTGGTTGTGCTGATGCTACTGACTCCATATCTTCTGTTAAAGATGGAGA 919
Query 899 AGCCCCGAA-AGTGTCTCCAAACTCTTCTCAGAAGGAAGTCGGCACTCTTGTATCCTTGA 957
|||||| || ||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 920 AGCCCC-AATAGTGTCTCCAAACTCTTCTCAGAAGGATGTCGGCACTCTTATATCCTTGA 978
Query 958 TAACATCTCCTCCGAGGGAACATGAAAATGACAGAAAGCTGGAGATTAGCGAAACAGAGG 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 AAACATCTCCTCCGAGGGAACATGAAAATGACAGAAAGCTGGAGATTAGCGAAACAGAGG 1038
Query 1018 CGAGGAAGGAAGAAAAAGAGAGCTGTGAGAATATGGAGGTTTCGGCATCTCCTTTGTGCG 1077
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1039 CAAGGAAGGAAGAAAAAGAGAGCTGTGAGAATATGGAGGTTTCTGCATCTCCTTTGTGCG 1098
Query 1078 AAGAAACTCCAGTTTTAGCACTTAGTAAAAATCGGTGTATCAAGTACACGTTCAAGAGGA 1137
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1099 AAGAAACTCCAGTTTTAGCACTGAGTAAAAATCGGTGCATCAAGTACACGTTCAAGAGGA 1158
Query 1138 AGAGAAAGAAGGAGGTGTTAAGCAACAATCTTGAAGGAGATTCCTCGTTTGAGGAGAGCA 1197
|||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
Sbjct 1159 AGAGAAAGAAGGAGGTCTTAAGTAA---TCTTGAAGGAGATTCCTCGTTTGAGGAGAGTA 1215
Query 1198 GAAACATGAAACAGAAGACTGGTGAGAAAGACGATGGTTACTTGGAGTCTCTGAAGCCTA 1257
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1216 GAAACATGAAACAGAAGACTGTTGAGAAAGACGATGGTTACTTGGAGTCTCTGAAGCCTA 1275
Query 1258 GCTTCACCAGTGAATCATCTCGGGATGTAGTCTATGCTTAGCACAGGTGGCTTGGAAGGT 1317
|||| ||||||||||||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 1276 GCTTTACCAGTGAATCATCTAGAGATGTAGTCTATGCTTAGCACATGTGGCTTGGAAGGT 1335
Query 1318 TAGTAAATATCAACATACATCTAATTTGCTATATCATATTAAGTTTCTTATGTTTCCTTC 1377
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1336 TAGTAAATATCGACATACATCTAATTTGCTATATCATATTAAGTTTATTATGTTTCCTTC 1395
Query 1378 TTGCCGTGAAAGT--AT--T-TA-G-TCTAAAAACTGGTATCACTAGTAGTGCCCTTTTG 1430
||||| | ||| | | | || | ||||||||||| ||||| ||| ||||||||||||
Sbjct 1396 TTGCCTTTAAACTTGAAAGTGTATGGTCTAAAAACTGATATCAGTAGCAGTGCCCTTTTG 1455
Query 1431 TTGCATT-T--T---GGGTGTAAACTCTTGTCGATTGTGATGGGTTtatatatatatata 1484
||||||| | | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1456 TTGCATTATGGTTTTGGGTGTAAACTCTTGTCCATTGTGATGGGTTTATATATATAT--- 1512
Query 1485 tatGATGTCCAAGATTCTGACTTTTTCTATGTTTCTTTA--GTATTTTACTGGGCACAGC 1542
||||||||||||||||| | || ||||||||||||| |||||||| ||||||||||
Sbjct 1513 ---GATGTCCAAGATTCTGAATGTT-CTATGTTTCTTTATTGTATTTTAATGGGCACAGC 1568
Query 1543 TTGTACCATTCTCGTAGAAGAAAGATTTGC 1572
||||||||||||||||||| ||||||||||
Sbjct 1569 TTGTACCATTCTCGTAGAATAAAGATTTGC 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77610042570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5