BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476622 Length=1572 Score E Sequences producing significant alignments: (Bits) Value AT1G74860.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2364 0.0 > AT1G74860.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19010.1); Has 210 Blast hits to 193 proteins in 61 species: Archae - 0; Bacteria - 9; Metazoa - 75; Fungi - 18; Plants - 58; Viruses - 1; Other Eukaryotes - 49 (source: NCBI BLink). | chr1:28123319-28125882 FORWARD LENGTH=1598 Length=1598 Score = 2364 bits (1280), Expect = 0.0 Identities = 1492/1590 (94%), Gaps = 31/1590 (2%) Strand=Plus/Plus Query 1 AACCTTTTTAGCTTTTTCTTTCTTCTTGGCGAGTTCGCGACCTTGGTCGGAAAATCAACA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22 AACCTTTTTAGCTTTTTCTTTCTTCTTGGCGAGTTCGCGACCTTGGTCGGAAAATCAACA 81 Query 61 ATCGCTTCTCTGCAATCTCATTATCGGCGCTAATGGCTGACCAAGAGACCTTAGCGGCGT 120 ||||||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||| Sbjct 82 ATCGCTTCTCTGCAATCGCATTATCGGCTCTAATGGCAGACCCAGAGACCTTAGCGGCGT 141 Query 121 TGAAGAGAGCCTACGCCGATACGATACTGAACACAACGAAGGAAGCGGCGGCGCGTGTGA 180 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 142 TGAAGAGAGCCTACGCCGATACGATACTGAACACGACGAAGGAAGCGGCGGCACGTGTGA 201 Query 181 TGGTTTCTGAGAAGAAGGCGCGTAGGTATCAGCAAGAACTTGCGACGGTTAGAGATGAAG 240 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 202 TGGTTTCTGAGAAGAAGGCGCGTAGGTATCAGCAAGAACTTGTGACGGTTAGAAATGAAG 261 Query 241 CACTTCAGACGTTGCTTAGGCTTAAACAGATGCTTGATTCCAAGGTCAAAGAGACGGAGA 300 ||||||| |||||| ||||||||||||||||||||||||||||||| || ||||| |||| Sbjct 262 CACTTCATACGTTGGTTAGGCTTAAACAGATGCTTGATTCCAAGGTTAAGGAGACAGAGA 321 Query 301 TGCAATCCTTGAAGCAGCAACAGAAGGTTGAGGAACTTGAAGCTCAGCTTGGAGAAGCTG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 TGCAATCCTTGAAGCAGCAACAGAAGGTTGAGGAACTTGAAGCTCAGCTTGGAGAAGCTG 381 Query 361 AAGATATTGTAGGAGAGCTGAGGATGGAGTTGAGAGTACTCCACAATGAGCTCAAGAAAC 420 ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| Sbjct 382 AAGATATTGTAGGAGAGCTGAGGTTGGAGTTGAGAGTACTTCACGATGAGCTCAAGAAAC 441 Query 421 TTACGAATGGTCAGACACATCTTAAAAGTGA-TCATGAGGAAGACCCCTGTGGGAATAAC 479 ||||| ||||||||| ||||||||||| || |||||||||| ||| |||| |||||||| Sbjct 442 TTACGGATGGTCAGAAACATCTTAAAAA-GAATCATGAGGAAAACCTCTGTTGGAATAAC 500 Query 480 CGCGATGCTGCAGTTTCTGTAGTGCCTGAGGTTTCTTGCAGTCACGGGAACACAGAACCT 539 || |||||||||||||||||| |||||||||||||||||||||||| |||||||||| || Sbjct 501 CGTGATGCTGCAGTTTCTGTAATGCCTGAGGTTTCTTGCAGTCACGAGAACACAGAAGCT 560 Query 540 GTAGGTTTTTGCATCCCAGTGGAACAAAGTGGATCTGTGGTGGCTAATGGGATAAAAGTA 599 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 561 GTAGGTTTTTGCATCCCAGTGGAACAAAATGGATCAGTGGTGGCTAATGGGATAAAAGTA 620 Query 600 CCAG-CTTTGACTCGCATAAATAGTATTAACCGGTGTTCTTATAAAGATAACAAGGATCA 658 || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 621 CC-GTCTTTGACTCGCATAAATAGTATTAACCGGTGTTCTTATAAAGATAACAAGGATCA 679 Query 659 GTGTCACCACACTCTTCCATCTATACTGACAAAACGCAGGGAAGCTGAAGGTTTAGCTCA 718 |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 680 ATGTCACTACACTCTTCCATCTATACTGACAAAACGCAGGGAAACTGAAGGTTTAGCTCA 739 Query 719 GATGATCCACGCAGTAGATAGCAGTATGGCCAATGGGGTTCTCTCGTCCTCTGTAGAAGT 778 |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 740 GATGATCCACACAGTAGATAGCAGTATGGCCAATGGGGTTCTGTCTTCCTCTGTAGAAGT 799 Query 779 AGGAGATGTGAATGATGGAGTATGTCTTCACAAAGTTTCGTCTTGTAAAATTGTAGAGAC 838 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 800 AGGAGATGTGAATGATGGAGTATGTCTTCACGAAGTTTCGTCTTGTAAAATTGTAGAGAG 859 Query 839 CTTAGAAATGTCTGGTTGTGCTGATGCTACTGACTCCATATCTACTGTTAGAGATGGAGA 898 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 860 CTTAGAAATGTCTGGTTGTGCTGATGCTACTGACTCCATATCTTCTGTTAAAGATGGAGA 919 Query 899 AGCCCCGAA-AGTGTCTCCAAACTCTTCTCAGAAGGAAGTCGGCACTCTTGTATCCTTGA 957 |||||| || ||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 920 AGCCCC-AATAGTGTCTCCAAACTCTTCTCAGAAGGATGTCGGCACTCTTATATCCTTGA 978 Query 958 TAACATCTCCTCCGAGGGAACATGAAAATGACAGAAAGCTGGAGATTAGCGAAACAGAGG 1017 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 979 AAACATCTCCTCCGAGGGAACATGAAAATGACAGAAAGCTGGAGATTAGCGAAACAGAGG 1038 Query 1018 CGAGGAAGGAAGAAAAAGAGAGCTGTGAGAATATGGAGGTTTCGGCATCTCCTTTGTGCG 1077 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1039 CAAGGAAGGAAGAAAAAGAGAGCTGTGAGAATATGGAGGTTTCTGCATCTCCTTTGTGCG 1098 Query 1078 AAGAAACTCCAGTTTTAGCACTTAGTAAAAATCGGTGTATCAAGTACACGTTCAAGAGGA 1137 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 1099 AAGAAACTCCAGTTTTAGCACTGAGTAAAAATCGGTGCATCAAGTACACGTTCAAGAGGA 1158 Query 1138 AGAGAAAGAAGGAGGTGTTAAGCAACAATCTTGAAGGAGATTCCTCGTTTGAGGAGAGCA 1197 |||||||||||||||| ||||| || |||||||||||||||||||||||||||||| | Sbjct 1159 AGAGAAAGAAGGAGGTCTTAAGTAA---TCTTGAAGGAGATTCCTCGTTTGAGGAGAGTA 1215 Query 1198 GAAACATGAAACAGAAGACTGGTGAGAAAGACGATGGTTACTTGGAGTCTCTGAAGCCTA 1257 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1216 GAAACATGAAACAGAAGACTGTTGAGAAAGACGATGGTTACTTGGAGTCTCTGAAGCCTA 1275 Query 1258 GCTTCACCAGTGAATCATCTCGGGATGTAGTCTATGCTTAGCACAGGTGGCTTGGAAGGT 1317 |||| ||||||||||||||| | |||||||||||||||||||||| |||||||||||||| Sbjct 1276 GCTTTACCAGTGAATCATCTAGAGATGTAGTCTATGCTTAGCACATGTGGCTTGGAAGGT 1335 Query 1318 TAGTAAATATCAACATACATCTAATTTGCTATATCATATTAAGTTTCTTATGTTTCCTTC 1377 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1336 TAGTAAATATCGACATACATCTAATTTGCTATATCATATTAAGTTTATTATGTTTCCTTC 1395 Query 1378 TTGCCGTGAAAGT--AT--T-TA-G-TCTAAAAACTGGTATCACTAGTAGTGCCCTTTTG 1430 ||||| | ||| | | | || | ||||||||||| ||||| ||| |||||||||||| Sbjct 1396 TTGCCTTTAAACTTGAAAGTGTATGGTCTAAAAACTGATATCAGTAGCAGTGCCCTTTTG 1455 Query 1431 TTGCATT-T--T---GGGTGTAAACTCTTGTCGATTGTGATGGGTTtatatatatatata 1484 ||||||| | | ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1456 TTGCATTATGGTTTTGGGTGTAAACTCTTGTCCATTGTGATGGGTTTATATATATAT--- 1512 Query 1485 tatGATGTCCAAGATTCTGACTTTTTCTATGTTTCTTTA--GTATTTTACTGGGCACAGC 1542 ||||||||||||||||| | || ||||||||||||| |||||||| |||||||||| Sbjct 1513 ---GATGTCCAAGATTCTGAATGTT-CTATGTTTCTTTATTGTATTTTAATGGGCACAGC 1568 Query 1543 TTGTACCATTCTCGTAGAAGAAAGATTTGC 1572 ||||||||||||||||||| |||||||||| Sbjct 1569 TTGTACCATTCTCGTAGAATAAAGATTTGC 1598 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77610042570 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5