BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476623
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74870.1 | Symbols: | RING/U-box superfamily protein | chr1... 1315 0.0
> AT1G74870.1 | Symbols: | RING/U-box superfamily protein | chr1:28126928-28128463
FORWARD LENGTH=1223
Length=1223
Score = 1315 bits (712), Expect = 0.0
Identities = 1094/1262 (87%), Gaps = 92/1262 (7%)
Strand=Plus/Plus
Query 1 GAGCGAGAGACTGAGAAATACAAGGAGCGTAGCAGAGCAGTTTCCGATTTCCATTTCTCT 60
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GAGCGAGAGACTGAGAAATAGAAGGAGCGTAGCAGAGCAGTTTCCGATTTTCATTTCTCT 60
Query 61 CTCTTAATCCGGATTTAAGTATTAGGGATTTTTCTTCTCTCTAGCGACATTA----CTCT 116
|||||||||| |||||||||||||||| |||||||||| || | || ||||| ||||
Sbjct 61 CTCTTAATCCAGATTTAAGTATTAGGGTTTTTTCTTCTATC-ATCGCCATTACTCTCTCT 119
Query 117 CTCTGTGTCGC---TGTGTGTGCGTTGCTCGAAGA-T-T-ATCATCATGGTTGCTGATTC 170
|||||| |||| |||||||| ||||||| |||| | | ||||||||||||||||
Sbjct 120 CTCTGTTTCGCTTGTGTGTGTGTGTTGCTCAAAGATTATCATCATCATGGTTGCTG---- 175
Query 171 AATCACAGACTCTGAGCTCTTTCATGGCTCTCCGATTTCAAGAGATTTCGCCAAGAAACG 230
||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 176 --TCACAGACTCTGAACTCTTTCATGGCTCTCCGATTTCAACAGATTTCTCCAAGAAACG 233
Query 231 CAAGGCGAATTGGTTTTGTAAACTAAAGCAGTGGAAGATTGATGCTCGTCGCAAGCAATG 290
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 234 CAAGGCGAATTGGTTTTGTAAGCTGAAGCAGTGGAAGATTGATGCTCGTCGCAAACAATG 293
Query 291 GATTTATCAATGGAAAAAAGCAAATCTTGGTGAAGAGGATAATGGG-CGTAGACTGAAAT 349
||||| ||||||||||||||||||| | | |||||| || ||| || |||||| ||| ||
Sbjct 294 GATTTCTCAATGGAAAAAAGCAAATGTAGATGAAGAAGA-AATTGGACGTAGATTGAGAT 352
Query 350 CTTTGCTAGAGAAACTTACTGATCAAAAAGCTTGGAGGATTGATTATGATGATGC-G-G- 406
||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 353 CTTTGTTAGAGAAACTGACTGATCAAAAAGCTTGGAGGATTGATTATGATGATGATGAGG 412
Query 407 ATGATGA--T----CTTGAAAGGACATCATCATCTGCTAGTAGCCCCACGAGTGTTCTCA 460
||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 413 ATGATGAGATTGATCTTGAAAGGACATCATCATTTGCTAGTAGTCCCACGAGTGTTCTCA 472
Query 461 AGAGCAAAGATTCTGTTACTGGCGATTGCTTCTGTTGTTCTAAGCAGATGACTGAGGAAG 520
|||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||
Sbjct 473 AGAGGAAAGATTCTGTTAGTGGTGATTGCTTTTGTTGTTCTAAGCAGATGACTGAGGAAG 532
Query 521 ATCAGGAAGAAGTTTTCGACGATGCTTATGATAACTGGGATGGGTTTAGAGATGCGTTAA 580
| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 533 A---GGAAGAAGTTTTTGACGATGCTTATGATAACTGGGATGGGTTTAAAGATGCGTTAA 589
Query 581 ACTCCTTTGACAA------C--C-AAAGCCCTCGACTTGAGACTGAAGATTTAGAGCAAG 631
|||||||||| || | | ||||| ||||||||| ||| |||||||| |||||||
Sbjct 590 ACTCCTTTGAGAATGATAACAACGAAAGCTCTCGACTTGTGACAGAAGATTTTGAGCAAG 649
Query 632 AAGAAGA---TCCGATTCCAGATACAAGCCAGAGGAGGAAGAAGT-CTACCCATGAGAAG 687
||||||| || ||||||||||||||||||||||| ||| |||| | | | | |||||
Sbjct 650 AAGAAGAAGATCTGATTCCAGATACAAGCCAGAGGATGAACAAGTGCAAGC-A--AGAAG 706
Query 688 CTTTTTCATGAAGACAAGAAAGAAGCTTCACCTGCAAACACGACGATTCACAGAAACAGT 747
|| | || || || | || | | | |||||||||||||||||||
Sbjct 707 CTGCACC-TG--GA-AA---------T-CA---G-A--C--GACGATTCACAGAAACAGT 744
Query 748 AAAAAGAAGAAGAGGTCTAACTCTGAGAAGCAACGAGGTGATGATGATGAAGAATGTCCT 807
|| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 745 AATAAGAAGAAGAGGTCTAACTCTGAGAAGCAAAGAGGTGATGGTGATGAAGAATGTCCT 804
Query 808 ATTTGCTCTGAGTTGATGGATGCAACGGATCTAGAATTCGAACCATGTCCTTGTGGGTTT 867
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 805 ATTTGCTCTGAGTTGATGGATGCAACGGATCTAGAATTCGAACCATGTACTTGTGGGTTT 864
Query 868 CGGATTTGTCTCTTTTGCCATAAGAAGATCAGTGAAAACGAAGCACGTTGTCCAGCTTGC 927
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 865 CGGATTTGTCTCTTTTGCCATAACAAGATCAGTGAAAACGAAGCACGTTGTCCAGCTTGC 924
Query 928 AGGAAGGATTATGTTCGGACGAGTAATAGTAA-TGGAGAGGTAGGTT-TCCAGCAACGTG 985
|||||||||||| ||||||||| | || |||||| ||||||| || |||||||||
Sbjct 925 AGGAAGGATTATAAAAAGACGAGTAAAAA-AAGTGGAGAAGTAGGTTATC-AGCAACGTG 982
Query 986 GTGGTGCCACAATTCGCTTGTCTCCGTCTTTTAGAGGACTTGACAGAGCTTAAGATAGA- 1044
|| ||| ||| |||| |||||||||||| |||||||||||||||||||||||||| |||
Sbjct 983 GTCGTGGCACTATTCCCTTGTCTCCGTCGTTTAGAGGACTTGACAGAGCTTAAGAGAGAA 1042
Query 1045 -GAAAGA-gtttca----t---a--aaactttttt-ctacttttttgccttagtttc-tc 1091
|||||| ||| || | | |||||||||| ||| |||| | |||||||||| ||
Sbjct 1043 AGAAAGAAGTTCCAAAAGTTTCATGAAACTTTTTTTCTAGTTTTGT-CCTTAGTTTCATC 1101
Query 1092 agtttcatcaattttgtggttttGCTTA----GATTGTTGTCATCTCGGCAATAAATTTT 1147
|| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1102 AGGAACAAGAATTTTGTGGTTTTGCTTAATTAGATTGTTGTCATCTCGGCAATAAATTTT 1161
Query 1148 CATTCATGTTTGTGAATCATATAATACACATAAACCAATATTAGTCTTTTATTCGATACA 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 CATTCATGTTTGTGAATCATATAATACACATAAACCAATATTAGTCTTTTATTCGATACA 1221
Query 1208 TC 1209
||
Sbjct 1222 TC 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5