BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476623 Length=1209 Score E Sequences producing significant alignments: (Bits) Value AT1G74870.1 | Symbols: | RING/U-box superfamily protein | chr1... 1315 0.0 > AT1G74870.1 | Symbols: | RING/U-box superfamily protein | chr1:28126928-28128463 FORWARD LENGTH=1223 Length=1223 Score = 1315 bits (712), Expect = 0.0 Identities = 1094/1262 (87%), Gaps = 92/1262 (7%) Strand=Plus/Plus Query 1 GAGCGAGAGACTGAGAAATACAAGGAGCGTAGCAGAGCAGTTTCCGATTTCCATTTCTCT 60 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1 GAGCGAGAGACTGAGAAATAGAAGGAGCGTAGCAGAGCAGTTTCCGATTTTCATTTCTCT 60 Query 61 CTCTTAATCCGGATTTAAGTATTAGGGATTTTTCTTCTCTCTAGCGACATTA----CTCT 116 |||||||||| |||||||||||||||| |||||||||| || | || ||||| |||| Sbjct 61 CTCTTAATCCAGATTTAAGTATTAGGGTTTTTTCTTCTATC-ATCGCCATTACTCTCTCT 119 Query 117 CTCTGTGTCGC---TGTGTGTGCGTTGCTCGAAGA-T-T-ATCATCATGGTTGCTGATTC 170 |||||| |||| |||||||| ||||||| |||| | | |||||||||||||||| Sbjct 120 CTCTGTTTCGCTTGTGTGTGTGTGTTGCTCAAAGATTATCATCATCATGGTTGCTG---- 175 Query 171 AATCACAGACTCTGAGCTCTTTCATGGCTCTCCGATTTCAAGAGATTTCGCCAAGAAACG 230 ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 176 --TCACAGACTCTGAACTCTTTCATGGCTCTCCGATTTCAACAGATTTCTCCAAGAAACG 233 Query 231 CAAGGCGAATTGGTTTTGTAAACTAAAGCAGTGGAAGATTGATGCTCGTCGCAAGCAATG 290 ||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 234 CAAGGCGAATTGGTTTTGTAAGCTGAAGCAGTGGAAGATTGATGCTCGTCGCAAACAATG 293 Query 291 GATTTATCAATGGAAAAAAGCAAATCTTGGTGAAGAGGATAATGGG-CGTAGACTGAAAT 349 ||||| ||||||||||||||||||| | | |||||| || ||| || |||||| ||| || Sbjct 294 GATTTCTCAATGGAAAAAAGCAAATGTAGATGAAGAAGA-AATTGGACGTAGATTGAGAT 352 Query 350 CTTTGCTAGAGAAACTTACTGATCAAAAAGCTTGGAGGATTGATTATGATGATGC-G-G- 406 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | | Sbjct 353 CTTTGTTAGAGAAACTGACTGATCAAAAAGCTTGGAGGATTGATTATGATGATGATGAGG 412 Query 407 ATGATGA--T----CTTGAAAGGACATCATCATCTGCTAGTAGCCCCACGAGTGTTCTCA 460 ||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 413 ATGATGAGATTGATCTTGAAAGGACATCATCATTTGCTAGTAGTCCCACGAGTGTTCTCA 472 Query 461 AGAGCAAAGATTCTGTTACTGGCGATTGCTTCTGTTGTTCTAAGCAGATGACTGAGGAAG 520 |||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| Sbjct 473 AGAGGAAAGATTCTGTTAGTGGTGATTGCTTTTGTTGTTCTAAGCAGATGACTGAGGAAG 532 Query 521 ATCAGGAAGAAGTTTTCGACGATGCTTATGATAACTGGGATGGGTTTAGAGATGCGTTAA 580 | |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 533 A---GGAAGAAGTTTTTGACGATGCTTATGATAACTGGGATGGGTTTAAAGATGCGTTAA 589 Query 581 ACTCCTTTGACAA------C--C-AAAGCCCTCGACTTGAGACTGAAGATTTAGAGCAAG 631 |||||||||| || | | ||||| ||||||||| ||| |||||||| ||||||| Sbjct 590 ACTCCTTTGAGAATGATAACAACGAAAGCTCTCGACTTGTGACAGAAGATTTTGAGCAAG 649 Query 632 AAGAAGA---TCCGATTCCAGATACAAGCCAGAGGAGGAAGAAGT-CTACCCATGAGAAG 687 ||||||| || ||||||||||||||||||||||| ||| |||| | | | | ||||| Sbjct 650 AAGAAGAAGATCTGATTCCAGATACAAGCCAGAGGATGAACAAGTGCAAGC-A--AGAAG 706 Query 688 CTTTTTCATGAAGACAAGAAAGAAGCTTCACCTGCAAACACGACGATTCACAGAAACAGT 747 || | || || || | || | | | ||||||||||||||||||| Sbjct 707 CTGCACC-TG--GA-AA---------T-CA---G-A--C--GACGATTCACAGAAACAGT 744 Query 748 AAAAAGAAGAAGAGGTCTAACTCTGAGAAGCAACGAGGTGATGATGATGAAGAATGTCCT 807 || |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 745 AATAAGAAGAAGAGGTCTAACTCTGAGAAGCAAAGAGGTGATGGTGATGAAGAATGTCCT 804 Query 808 ATTTGCTCTGAGTTGATGGATGCAACGGATCTAGAATTCGAACCATGTCCTTGTGGGTTT 867 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 805 ATTTGCTCTGAGTTGATGGATGCAACGGATCTAGAATTCGAACCATGTACTTGTGGGTTT 864 Query 868 CGGATTTGTCTCTTTTGCCATAAGAAGATCAGTGAAAACGAAGCACGTTGTCCAGCTTGC 927 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 865 CGGATTTGTCTCTTTTGCCATAACAAGATCAGTGAAAACGAAGCACGTTGTCCAGCTTGC 924 Query 928 AGGAAGGATTATGTTCGGACGAGTAATAGTAA-TGGAGAGGTAGGTT-TCCAGCAACGTG 985 |||||||||||| ||||||||| | || |||||| ||||||| || ||||||||| Sbjct 925 AGGAAGGATTATAAAAAGACGAGTAAAAA-AAGTGGAGAAGTAGGTTATC-AGCAACGTG 982 Query 986 GTGGTGCCACAATTCGCTTGTCTCCGTCTTTTAGAGGACTTGACAGAGCTTAAGATAGA- 1044 || ||| ||| |||| |||||||||||| |||||||||||||||||||||||||| ||| Sbjct 983 GTCGTGGCACTATTCCCTTGTCTCCGTCGTTTAGAGGACTTGACAGAGCTTAAGAGAGAA 1042 Query 1045 -GAAAGA-gtttca----t---a--aaactttttt-ctacttttttgccttagtttc-tc 1091 |||||| ||| || | | |||||||||| ||| |||| | |||||||||| || Sbjct 1043 AGAAAGAAGTTCCAAAAGTTTCATGAAACTTTTTTTCTAGTTTTGT-CCTTAGTTTCATC 1101 Query 1092 agtttcatcaattttgtggttttGCTTA----GATTGTTGTCATCTCGGCAATAAATTTT 1147 || || ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1102 AGGAACAAGAATTTTGTGGTTTTGCTTAATTAGATTGTTGTCATCTCGGCAATAAATTTT 1161 Query 1148 CATTCATGTTTGTGAATCATATAATACACATAAACCAATATTAGTCTTTTATTCGATACA 1207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1162 CATTCATGTTTGTGAATCATATAATACACATAAACCAATATTAGTCTTTTATTCGATACA 1221 Query 1208 TC 1209 || Sbjct 1222 TC 1223 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59387244735 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5