BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476631
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74930.1 | Symbols: ORA47 | Integrase-type DNA-binding super... 830 0.0
AT1G19210.1 | Symbols: | Integrase-type DNA-binding superfamil... 248 6e-65
> AT1G74930.1 | Symbols: ORA47 | Integrase-type DNA-binding superfamily
protein | chr1:28144132-28145049 FORWARD LENGTH=918
Length=918
Score = 830 bits (449), Expect = 0.0
Identities = 723/840 (86%), Gaps = 80/840 (10%)
Strand=Plus/Plus
Query 33 GAACCGG-AACAGAATCCAATTCAACCAAA-C----CGAACCAAACCGG-GTTTCTTTTC 85
||||||| |||||||||||||||||||||| | |||||| |||||| |||| || ||
Sbjct 47 GAACCGGAAACAGAATCCAATTCAACCAAACCGAATCGAACCGAACCGGAGTTT-TTATC 105
Query 86 CAATGGTGAAGCAAGCGATCAAGGAAGAGGAGAAGACGAGAAACACGGCGATGCAGTCAA 145
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 106 CAATGGTGAAGCAAGCGATGAAGGAAGAGGAGAAGAAGAGAAACACGGCGATGCAGTCAA 165
Query 146 AGTACAAAGGAGTGAGGAAGAGGAAATGGGGAAAATGGGTATCGGAGATCAGACTTCCAC 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 AGTACAAAGGAGTGAGGAAGAGGAAATGGGGAAAATGGGTATCGGAGATCAGACTTCCAC 225
Query 206 ATAGCAGAGAACGTATCTGGTTAGGCTCTTACGAAACTCCAGAGAAGGCGGCGCGTGCTT 265
| ||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 226 ACAGCAGAGAACGAATTTGGTTAGGCTCTTACGACACTCCCGAGAAGGCGGCGCGTGCTT 285
Query 266 TCGACGCCGCTCAATTTTGTCTCCGCGGCGGAGAAGCTAATTTCAATTTCCC-AGATAAT 324
||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct 286 TCGACGCCGCTCAATTTTGTCTCCGCGGCGGCGATGCTAATTTCAATTTCCCTA-ATAAT 344
Query 325 CCACCGTCTATCTCCGGAGGAAGGTCGTTGACGCCTCCGGAGATCCAGGAAGCGGCTGCT 384
|||||||| ||||||| || || ||||||||||||||||||||| |||||||| ||||||
Sbjct 345 CCACCGTCGATCTCCGTAGAAAAGTCGTTGACGCCTCCGGAGATTCAGGAAGCTGCTGCT 404
Query 385 CGATTCGCCAACATAACCCAAGACAGTGTTGTTGTTGTCAAGGGAGAAGGAGAAGAAGAA 444
||||||| |||| | |||||||| | | || ||||||||||| | | |||
Sbjct 405 AGATTCGCTAACACATTCCAAGACA-T-T-GT------CAAGGGAGAAG-A-A-GAA--- 449
Query 445 TCGGGTTTAGTACCCGGATCCGAGATCCGACCAGAGTCTCCTTCTACCTCTGCATCTGTG 504
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 450 TCGGGTTTAGTACCCGGATCCGAGATCCGACCAGAGTCTCCTTCTACATCTGCATCTGTT 509
Query 505 GCTACATCGACGGTGGATTATGATCTATCGTTTTTCGATTTGCTTCCGATGGATTTCGGG 564
|||||||||||||||||||||||| | |||||||| ||||||||||||||| ||||||||
Sbjct 510 GCTACATCGACGGTGGATTATGATTTTTCGTTTTTGGATTTGCTTCCGATGAATTTCGGG 569
Query 565 TTTGA--C-------GAC---TTCTC---C------GGTG---ATCGATTTACAGAGATT 600
||||| | ||| ||||| | |||| |||||||||||||||||
Sbjct 570 TTTGATTCCTTCTCCGACGACTTCTCTGGCTTCTCCGGTGGTGATCGATTTACAGAGATT 629
Query 601 TTACCCATCGAAGATTACGGAGGAGAGAGTCTATTAGATGAATCTTTGCTTCTTTGGGAT 660
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 630 TTACCCATCGAAGATTACGGAGGAGAGAGTTTATTAGATGAATCTTTGATTCTTTGGGAT 689
Query 661 TTTTGAATTCCCAAACAT------------GAG-G---T-T----TT--CCTTGGAGTCA 697
|||||||||||||||||| ||| | | | || |||||||||||
Sbjct 690 TTTTGAATTCCCAAACATAATATTTTTTTAGAGCGAACTGTGAGATTTTCCTTGGAGTCA 749
Query 698 TGGAGTAACCTGGAGATTTTT-GTAACACGGAGCTCCAATGACCCGGGAACTTCTTTCGT 756
||||| || |||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 750 TGGAGAAATCTGGAGATTTTTTGTAACACGGAGCTCCAATGACCCGGGAATTTCTTTCGT 809
Query 757 TTCGGATCCGAATTTCTTGTGGATCATACCAATCATTCATTCCTATATTTTTTCAATTTT 816
||||||||||||||| ||||||||||| ||| || |||||||||||||| ||||
Sbjct 810 TTCGGATCCGAATTTGATGTGGATCATAT---TCA--CA--CCTATATTTTTTCATTTTT 862
> AT1G19210.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:6626822-6627530 REVERSE LENGTH=709
Length=709
Score = 248 bits (134), Expect = 6e-65
Identities = 190/216 (88%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 134 CGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGAAAATGGGTATCGGAGA 193
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 20 CGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGAAAATGGGTTTCAGAGA 79
Query 194 TCAGACTTCCACAT-AGCAGAGAACGTATCTGGTTAGGCTCTTACGAAACTCCAGAGAAG 252
|||||||||| || |||||||||||||| ||||| ||||||||||| ||||| ||||||
Sbjct 80 TCAGACTTCC-CAACAGCAGAGAACGTATTTGGTTGGGCTCTTACGATACTCCTGAGAAG 138
Query 253 GCGGCGCGTGCTTTCGACGCCGCTCAATT-TTGTCTCCGCGGCGGAGAA-GCTAATTTCA 310
|||||||||||||||||||| |||| || ||||||||| ||| | || || || ||||
Sbjct 139 GCGGCGCGTGCTTTCGACGCGGCTCT-TTATTGTCTCCGTGGCA-ACAACGCAAAGTTCA 196
Query 311 ATTTCCCAGATAATCCACCG-TCTATCTCCGGAGGA 345
||||||| |||||||| ||| | |||||||| |||
Sbjct 197 ATTTCCCTGATAATCCTCCGGTG-ATCTCCGGCGGA 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5