BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476633
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74950.1 | Symbols: JAZ2, TIFY10B | TIFY domain/Divergent CC... 946 0.0
> AT1G74950.1 | Symbols: JAZ2, TIFY10B | TIFY domain/Divergent
CCT motif family protein | chr1:28148575-28150444 REVERSE LENGTH=1280
Length=1280
Score = 946 bits (512), Expect = 0.0
Identities = 737/836 (88%), Gaps = 53/836 (6%)
Strand=Plus/Plus
Query 136 CGATGTCGAG---TTCTGCCGAGTTTTGGGACTTGTCTGGTCGGAAGCCGAGCTTTTCAC 192
|||||||||| ||||||||||| ||||||||| |||||||| || |||||||||||||
Sbjct 185 CGATGTCGAGTTTTTCTGCCGAGTGTTGGGACTTCTCTGGTCGTAAACCGAGCTTTTCAC 244
Query 193 AGACATGTAGTCGATTAAGTCGTTACCTGAAGGAAAATGGTAGTTTTGGAGATCTGACCT 252
| ||||||| |||||| ||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 245 AAACATGTACTCGATTGAGTCGTTACCTGAAGGAGAAGGGTAGTTTTGGAGATCTGAGCT 304
Query 253 TAGGGATGACATGCAAGCCTGACCTCAGTGGAGGTGTTGCTGTTTCACGTCAGCCTACAA 312
||||||||||||||||||| ||| | | |||| | | |||||||||||||||||
Sbjct 305 TAGGGATGACATGCAAGCCCGACGTTAATGGA------G--G-TTCACGTCAGCCTACAA 355
Query 313 TGATGAATCTGTTCCCTTGTGAAGCTTCAGGAATGGATTCTTCTGCTGCTC---AAGACA 369
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 356 TGATGAATCTGTTCCCTTGTGAAGCTTCAGGAATGGATTCTTCTGCTGGTCAAGAAGACA 415
Query 370 TTAAACCGAAGAATGTGTTTCCCAGACAATCAAGCTTTTCTTCTTCTTCTTGCTCCTCTG 429
|||||||||||| | ||||||| ||||||||||||||||||||||| || | |||||||
Sbjct 416 TTAAACCGAAGACTATGTTTCCGAGACAATCAAGCTTTTCTTCTTCCTC-T--TCCTCTG 472
Query 430 GGACCAAAGAAGATGTCCTCATGATCAAAGAGA-T--TAAATCTGTGAAGCCAGAGTCTC 486
|||||||||||||||| | ||||||||||||| | |||||||||||||||||||||||
Sbjct 473 GGACCAAAGAAGATGTACAGATGATCAAAGAGACTACTAAATCTGTGAAGCCAGAGTCTC 532
Query 487 AATCTGCTCCGTTGACCATATTCTACGGTGGTCGAGTTATGGTCTTTGATGATTTTTCTG 546
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 533 AATCTGCTCCGTTGACTATATTCTACGGTGGTCGAGTTATGGTGTTTGATGATTTTTCTG 592
Query 547 CTGAAAAAGCCAAACAAGTTATTGATTTGGCTAACAAAGGAAGTTCC-AAAG-------- 597
|||| ||||| ||| |||| |||||||||||||||||||||||| || ||||
Sbjct 593 CTGAGAAAGCTAAAGAAGTCATTGATTTGGCTAACAAAGGAAGTGCCAAAAGCTTCACAT 652
Query 598 GTTTCACAGCTGAAGTGAACAATAGCCAGAGTGCTTATTCTCAAAACTTGGCCAAGACTC 657
|||||||||||||||| ||||||| ||| ||||| | | | || |||
Sbjct 653 GTTTCACAGCTGAAGTAAACAATAACCATAGTGC----T-T----A-TT--------CTC 694
Query 658 AAAAAGAGATTGCTTCTAGCCCCAATCCCGTTTGTAGTCCTGCGAAAACCGCAGCACAAG 717
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 695 AAAAAGAGATTGCTTCTAGCCCAAATCCTGTTTGTAGTCCTGCAAAAACCGCAGCACAAG 754
Query 718 A-CTCAATCCAGCCCAACCCGGCCTCTTTAGCCTGCGAACTCCCGATTGCCAGAAGAGCT 776
| | |||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 755 AGC-CAATTCAGCCTAACCCGGCCTCTTTAGCCTGCGAACTCCCGATTGCAAGAAGAGCT 813
Query 777 TCGCTTCATCGATTCCTAGAGAAGAGGAAGGACAGGATCACATCAAAGGCACCATACCAA 836
|| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 814 TCACTTCATCGGTTCCTTGAGAAGAGGAAGGATAGGATCACATCAAAGGCACCATACCAA 873
Query 837 ATAGACGGTTCAGCTGAAGCGTCTTCAAAGCCTA--A-CCCAGCTTGGCTCAGTTCGCGG 893
|||||||||||||||||||||||||| ||||||| | |||||||||||||||||| |||
Sbjct 874 ATAGACGGTTCAGCTGAAGCGTCTTCCAAGCCTACTAACCCAGCTTGGCTCAGTTCACGG 933
Query 894 TAAACTTCGAGCATGTCCGACCCAGAAGGCACAACTTGAGAGACCTTCTCGTAAGA 949
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 934 TAAACTTCGAGCCTGTCCGACCCAGAAGGCACAACTTGAGAGACCTTCTTGTAAGA 989
Score = 309 bits (167), Expect = 4e-83
Identities = 218/239 (91%), Gaps = 18/239 (8%)
Strand=Plus/Plus
Query 949 AAGCTGCTCCTCTGTTCATTTTTTCTATAGATTAATTTCACCCCTAGTAGTTTTGTTTGT 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAGCTGCTCCTCTGTTCATTTTTTCTATAGATTAATTTCACCCCTAGTAGTTTTGTTTGT 1079
Query 1009 TTAACT-CCCGGAAAACTCATTATA--T-T-TG-------TATCAA-A--GTTCAATGTT 1053
|||||| ||| |||||||||||||| | | || |||||| | ||||||||||
Sbjct 1080 TTAACTCCCCCGAAAACTCATTATATTTGTATGAAATCAATATCAATAGTGTTCAATGTT 1139
Query 1054 TGCTTCTGGGGTTTTAAGTTTAAGCCATTGTGTATAACCCTTTCCTCTGCTC-ATCTCAA 1112
||||||||||| ||||||||| ||||| |||||||||||||||||||||| | |||||||
Sbjct 1140 TGCTTCTGGGG-TTTAAGTTTTAGCCAGTGTGTATAACCCTTTCCTCTGC-CGATCTCAA 1197
Query 1113 CATTAGCTTGCAACTTTTGTAAGAAACATCACTTGTGTTTTTGTGTTGATGGCCATTAA 1171
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CATTAGCTTGCAACTTTTGTAAGAAACATCACTTGTGTTTTTGTGTTGATGGCCATTAA 1256
Score = 86.1 bits (46), Expect = 7e-16
Identities = 53/56 (95%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 66 TTTTTTATAAAGATTCCGAGAAAATTCAACAACTCAGGAAGGAAGATTCTTTTGCT 121
|||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 92 TTTTTTAT-AAGATT-CGAGAAAATTCAACAACTCAGGAAGGAAGATCCTTTTGCT 145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5