BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476635
Length=2050
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74960.2 | Symbols: FAB1, KAS2 | fatty acid biosynthesis 1 |... 3101 0.0
> AT1G74960.2 | Symbols: FAB1, KAS2 | fatty acid biosynthesis 1
| chr1:28151978-28156259 REVERSE LENGTH=2285
Length=2285
Score = 3101 bits (1679), Expect = 0.0
Identities = 1871/1959 (96%), Gaps = 32/1959 (2%)
Strand=Plus/Plus
Query 9 tctctctctctATCTGTTGTGTCTGTTTGTTTGAGAGGAGGATATTTGGCGTCTCCACGC 68
||||||||||| ||| | ||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 50 TCTCTCTCTCTCTCT-CTCTGTCTGTTTGTTTCAGAGAAGGATTTTTGGCGTCTCCACGC 108
Query 69 ACGATTTTACGCATCGAAGCTCTCTGCACGCTTCCTGAAagagagagagaagagagaaga 128
||||||| |||||||||||||||||||||||||||| || | |||| ||||||||||
Sbjct 109 ACGATTTAACGCATCGAAGCTCTCTGCACGCTTCCT----GA-A-AGAG-AGAGAGAAGA 161
Query 129 gagagaTCGCAGATCGATTCCTCTTAAATCTCTCGTGAATCCCATTTTGGCTTTGTCTCT 188
||||||||||||||||||| |||||||||||||||||||||||| ||| || | |||||
Sbjct 162 GAGAGATCGCAGATCGATTTCTCTTAAATCTCTCGTGAATCCCA-TTT-GC-CT-TCTCT 217
Query 189 CTGCTAGA-------TTC-TCTCTTCACCCATTTCTCGCTTTCTCCTTTGTTCTCTCATC 240
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 218 CTGCTAGATTCTCTCTTCTTCTCTTCACCCATTTCTCGCTTTCTCCTTTGTTCTCTCATC 277
Query 241 TGGGTTCTTCTC-AAGCCTCTTCC--TTT-TGCCATGGTGGGTGCGTCTTCCTCCTACGC 296
|||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |||||
Sbjct 278 TGGGTTCTTCTCAAAGCCTCTTCCTTTTTATGCCATGGTGGGTGCGTCTTCCTCTTACGC 337
Query 297 ATCTCCGTTATGTACCTGGTTTGTTGCAGCTTGCATGTCCGTCGCTCACGGCGGTGGAGA 356
||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |||||
Sbjct 338 ATCTCCGTTATGTACCTGGTTTGTTGCTGCTTGCATGTCCGTCTCTCACGGTGGAGGAGA 397
Query 357 TACCCGTCAGGCTGTTGCTCTTCAATCTGCTGGGCGGAGTCGGCGAAGGAGGCAGCTTAG 416
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 398 TAGCCGTCAGGCTGTTGCTCTTCAATCTGGTGGGCGGAGTCGGCGAAGGAGGCAGCTTAG 457
Query 417 CAAATGCTCT-TCCGCTTCTGGATCCGCTAGCATTCAGGCTCTTGTCACTTCTTGTTTGG 475
|||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 458 CAAATGCTCTGT-CGCTTCTGGATCCGCTAGCATTCAGGCTCTCGTCACTTCTTGTTTGG 516
Query 476 ATTTTGGTCCCTGTACTCACTacaacaacaacaacaacaaTGCATTGTCTTCTCTCTTTG 535
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 517 ATTTTGGTCCTTGTACTCACT------ACAACAACAACAATGCATTGTCTTCTCTCTTTG 570
Query 536 GATCGAATAGTGTTTCTTTGAATCGAAACCAGAGGAGACTGAATCGTGCAGCTAGCTCTG 595
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 571 GATCGAATAGTGTTTCTTTGAATCGAAACCAGAGGAGATTGAATCGTGCTGCTAGCTCCG 630
Query 596 GTGGAGCCATGGCAGTGATGGAGATGGAAAAGGAAGCCACCGTTAACAAGAAACCACCTA 655
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 631 GTGGAGCCATGGCAGTGATGGAGATGGAAAAGGAAGCTGCGGTTAACAAGAAACCACCTA 690
Query 656 CGGAGCAGCGTCGAGTTGTAGTGACTGGCATGGGAGTTGAAACATCATTGGGTCATGACC 715
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 691 CGGAGCAGCGTCGAGTTGTAGTGACAGGCATGGGAGTTGAAACATCATTGGGTCATGACC 750
Query 716 CACATACCTTTTATGAGAATTTGCTACAAGGCAACAGTGGTATTAGCCAGATTGAGAATT 775
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 751 CACATACCTTCTATGAGAATTTGCTACAAGGCAACAGTGGTATTAGCCAGATTGAAAATT 810
Query 776 TTGATTGTTCTGAATTTCCTACGCGAATTGCGGGTGAGATCAAAAGCTTCTCGACTGAAG 835
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 811 TTGATTGTTCTGAATTTCCTACGCGAATTGCGGGAGAGATCAAAAGCTTCTCGACTGAAG 870
Query 836 GATGGGTTGCTCCAAAACTTTCTAAAAGGATGGACAAGTTCATGCTCTATCTTCTCACAG 895
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 871 GATGGGTTGCTCCAAAACTTTCTAAAAGGATGGACAAATTCATGCTCTATCTTCTCACAG 930
Query 896 CTGGCAAGAAAGCTTTGGCTGATGGTGGGGTAACTGATGAAGTAATGGCAGAGTTTGACA 955
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 931 CTGGTAAGAAAGCTTTGGCTGATGGTGGGGTTACTGATGAAGTAATGGCAGAGTTTGACA 990
Query 956 AAACCAAATGTGGAGTTTTGATTGGCTCGGCAATGGGAGGAATGAAGGTCTTTTATGATG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 991 AAACCAAATGTGGAGTTTTGATTGGCTCGGCAATGGGAGGAATGAAGGTCTTTTACGATG 1050
Query 1016 CTATTGAAGCTCTGAGAATCTCTTACAAGAAGATGAATCCTTTTTGTGTACCTTTTGCGA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 CTATTGAAGCTCTGAGAATCTCTTACAAGAAGATGAATCCTTTTTGTGTACCTTTTGCGA 1110
Query 1076 CGACAAACATGGGTTCTGCTATGCTTGCTATGGATCTGGGATGGATGGGGCCAAACTATT 1135
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1111 CAACAAACATGGGTTCTGCTATGCTTGCCATGGATCTGGGATGGATGGGGCCAAACTATT 1170
Query 1136 CTATTTCAACTGCTTGTGCCACAAGCAACTTTTGCATTCTGAATTCAGCAAACCACATTA 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 CTATTTCAACTGCTTGTGCCACAAGCAACTTTTGCATTCTGAATTCAGCAAACCACATTA 1230
Query 1196 TTAAAGGTGAAGCTGATGTAATGCTCTGTGGTGGCTCAGATGCAGTTATTATTCCAATAG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 TTAAAGGTGAAGCTGATGTAATGCTCTGTGGTGGCTCAGATGCAGTTATTATTCCAATAG 1290
Query 1256 GGTTGGGAGGTTTTGTTGCATGCCGGGCTCTTTCACAAAGGAATAATGATCCTACAAAAG 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1291 GGTTGGGAGGTTTTGTTGCATGCCGGGCTCTTTCACAAAGGAATAATGATCCCACAAAAG 1350
Query 1316 CTTCACGTCCTTGGGATATCAATCGAGATGGTTTCGTGATGGGAGAGGGAGCTGGAGTTC 1375
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 CTTCACGTCCTTGGGATACCAATCGAGATGGTTTCGTGATGGGAGAGGGAGCTGGAGTTC 1410
Query 1376 TACTTTTGGAAGAACTCGAGCATGCTAAGAAAAGAGGAGCAACTATCTACGCAGAGTTCC 1435
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1411 TACTTTTGGAAGAACTCGAGCATGCTAAGAAAAGAGGTGCAACTATCTACGCAGAGTTCC 1470
Query 1436 TCGGTGGGAGTTTCACATGTGATGCGTATCACATGACCGAGCCTCACCCTGATGGGGCTG 1495
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1471 TCGGTGGGAGTTTCACATGTGATGCCTATCACATGACCGAGCCTCACCCTGATGGGGCTG 1530
Query 1496 GCGTCATTCTCTGTATCGAGAGAGCGTTAGCTAGTGCTGGGATTTCCAAGGAACAGATAA 1555
| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1531 GTGTTATTCTCTGTATTGAGAGAGCGTTAGCTAGTGCTGGGATTTCCAAGGAACAAATAA 1590
Query 1556 ATTACATAAATGCACATGCAACCTCAACACACGCTGGAGATATTAAGGAGTACCAAGCCC 1615
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 1591 ATTACATAAATGCACATGCAACCTCAACGCATGCTGGAGATATTAAGGAATACCAAGCCC 1650
Query 1616 TTGCTCACTGTTTTGGCCAAAATCCTGAGCTTAAGGTAAATTCCACAAAATCTATGATTG 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 TTGCTCACTGTTTTGGCCAAAATCCTGAGCTTAAGGTAAATTCCACAAAATCTATGATTG 1710
Query 1676 GACACTTGCTGGGAGCTGCTGGGGCCGTGGAGGCTGTTGCAACCGTGCAGGCAATAAGAA 1735
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |
Sbjct 1711 GACACTTGCTGGGAGCTGCTGGGGCCGTGGAGGCTGTTGCAACTGTGCAGGCGATACGGA 1770
Query 1736 CTGGATGGGTTCATCCAAATATCAACCTTGAGAATCCTGACAGTGGAGTGGATACAAAGC 1795
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1771 CCGGATGGGTTCATCCAAATATCAACCTCGAGAATCCAGACAGTGGAGTGGATACAAAGC 1830
Query 1796 TGCTGGTGGGTCCTAAGAAGGAGAGATTGGACATTAAAGCAGCCTTGTCAAATTCTTTCG 1855
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1831 TGCTGGTGGGTCCTAAGAAGGAGAGACTGGACATTAAAGCAGCCTTGTCAAATTCATTCG 1890
Query 1856 GGTTTGGTGGTCATAACTCCAGCATCATTTTTGCTCCTTACAAGTGAAAGCGAAAGCCGT 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1891 GGTTTGGTGGTCATAACTCCAGCATCATTTTTGCTCCTTACAAGTGAAAGCGAAAGCAGT 1950
Query 1916 TCCTTGTACTCCAAACCTGATTGTATAACTTGCTGTAAG 1954
| |||||||||||||||||||||||||||||||||||||
Sbjct 1951 TGCTTGTACTCCAAACCTGATTGTATAACTTGCTGTAAG 1989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101605903080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5