BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476636
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74970.1 | Symbols: RPS9, TWN3 | ribosomal protein S9 | chr1... 1343 0.0
> AT1G74970.1 | Symbols: RPS9, TWN3 | ribosomal protein S9 | chr1:28157530-28159302
REVERSE LENGTH=958
Length=958
Score = 1343 bits (727), Expect = 0.0
Identities = 887/961 (92%), Gaps = 23/961 (2%)
Strand=Plus/Plus
Query 1 TCTTCACTCTGCTCGTTATCTTCTTCC-TTTTACCTGTTCGACGAAACTCCTGAGCTCAG 59
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 2 TCTTCACTCTGCTCGTTATCTTCTTCCTTTTTACCTGTTCAACGAAACTCCTGAGCTCAG 61
Query 60 CTTCA-----CT-----TTA----C-TCGTTCAGCGACAATGGCGTCGATTTCGAACCTT 104
||||| || ||| | ||||||||||||||||||||||||| |||||||
Sbjct 62 CTTCACTTTGCTCGACGTTATCTTCTTCGTTCAGCGACAATGGCGTCGATTACGAACCTC 121
Query 105 GCTTCTTCTCTCTCTTCACTTTCGTTCTCCTCCCAAGTTTCTCAGAGACCTAACACAATC 164
|| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 122 GCCTCTTCTCTCTCTTCACTCTCGTTCTCCTCCCAAGTTTCTCAAAGACCTAACACCATT 181
Query 165 TCCTTCCCCCGCGCGAATTCGGTGTTCGCATTACCGGCGAAATCCGAC-CGCCGCTCTTC 223
|||||||||||||||||||| || |||||||||||||||||||||| | |||||| ||||
Sbjct 182 TCCTTCCCCCGCGCGAATTCAGTATTCGCATTACCGGCGAAATCCG-CACGCCGCGCTTC 240
Query 224 CCTATCTATTACCGCCACCGTAGCTGCTCCACCGGAGGAGGAGGAGATAATTGAGCTAAA 283
|||||||| |||||||| ||| |||||||||||||||||||||||||| |||| || ||
Sbjct 241 TCTATCTATCACCGCCACGGTATCTGCTCCACCGGAGGAGGAGGAGATAGTTGAACTGAA 300
Query 284 GAAGTACGTCAAATCGAGGCTTCCCGGAGGATTTGCTGCTCAGAAGATTATTGGCACTGG 343
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAATACGTCAAATCGAGGCTTCCCGGAGGATTTGCTGCTCAGAAGATTATTGGCACTGG 360
Query 344 ACGGCGTAAGTGCGCAATTGCTAGAGTTGTGCTTCAGGAAGGCACTGGGAAGGTTATCAT 403
||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 361 ACGACGTAAGTGCGCAATCGCTAGAGTTGTTCTTCAGGAAGGTACTGGGAAGGTTATCAT 420
Query 404 AAACTACCGTGATGCCAAGGAGTACCTTCAGGGAAATCCACTATGGCTTCAGTATGTTAA 463
||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 421 CAACTATCGTGATGCCAAGGAGTACCTTCAGGGAAATCCATTGTGGCTTCAGTATGTTAA 480
Query 464 AGTCCCACTAGTGACTTTAGGGTATGAGAACAGCTACGACATATTTGTGAAAGCCCATGG 523
||| ||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 481 AGTACCATTGGTGACTTTAGGATATGAGAATAGCTACGACATATTTGTGAAAGCCCATGG 540
Query 524 AGGCGGTCTCTCAGGTCAAGCTCAAGCTATTACCCTGGGAGTCGCACGTGCACTCCTCAA 583
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 541 AGGCGGTCTCTCAGGTCAAGCTCAAGCAATTACCTTGGGAGTCGCACGTGCACTCCTGAA 600
Query 584 GGTAAGTGCAGACCACAGATCGCCTTTGAAGAAAGAAGGTTTGCTCACTAGAGATGCGAG 643
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 601 GGTAAGTGCAGACCACAGATCGCCTTTGAAGAAGGAAGGTTTGCTCACTAGAGATGCGAG 660
Query 644 AGTGGTTGAAAGAAAGAAGGCCGGGCTCAAGAAGGCGCGTAAAGCACCACAATTCTCCAA 703
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 AGTGGTTGAAAGAAAGAAGGCCGGGCTCAAGAAGGCGCGTAAAGCCCCACAATTCTCCAA 720
Query 704 GCGTTAAGAGTTTTT-ATATCATTGGATCAACTCTTCAAGTAGACTCCTCTGCCTCCATT 762
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCGTTAAGAGTTTTACATATCATTGGATCAACTCTTCAAGTAGACTCCTCTGCCTCCATT 780
Query 763 CtttttttttAAACTCTTCTTGTCTATTAT-GTGTGTTTTGTTCCATGTTAATGTTTATG 821
|||||| ||||| |||||||||||||| | || ||||||| ||||||||||||||||
Sbjct 781 -TTTTTTAA-AAACTTTTCTTGTCTATTATCG-GTCTTTTGTTTCATGTTAATGTTTATG 837
Query 822 TGTAGACGAACCAATACAATCTCTGTTTCGTTTGAATGGAAGGCAAAATTGGTATGCTTT 881
||||||||||| |||||||||||||||| |||||||||||| ||||| ||| ||||||||
Sbjct 838 TGTAGACGAACTAATACAATCTCTGTTTTGTTTGAATGGAACGCAAAGTTGATATGCTTT 897
Query 882 TGAAACAAATGCACTTATGAATTGTGATCAAACAAATGCACTTGTGAATCGTTTATCAGT 941
|| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 898 TGTAACAAATGCACTTATGAATTGTGATCAGACAAATGCACTTCTGAATCGTTTATCAGT 957
Query 942 T 942
|
Sbjct 958 T 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5