BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476637

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G74990.1 | Symbols:  | RING/U-box superfamily protein | chr1...   789    0.0  


> AT1G74990.1 | Symbols:  | RING/U-box superfamily protein | chr1:28159715-28160487 
REVERSE LENGTH=608
Length=608

 Score =  789 bits (427),  Expect = 0.0
 Identities = 539/589 (92%), Gaps = 23/589 (4%)
 Strand=Plus/Plus

Query  1    GAAACCTCTCTCTCATCGCCGAGGAAAAAAGATCTTTCAATGGCTATTAACATGACCATC  60
            ||||||||| |||||||||||||||||||||||||| ||||||||||||||   ||||||
Sbjct  34   GAAACCTCTATCTCATCGCCGAGGAAAAAAGATCTTACAATGGCTATTAAC---ACCATC  90

Query  61   ACGAACGAAG-A-A-GATGCTTCGAACAACTTTGGATGCAACATCTGTCTTGAATTGGCA  117
            |||||||||| | | ||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct  91   ACGAACGAAGAAGATGATGCATCAAACAACTTTGGATGCAATATCTGTCTTGAATTGGCA  150

Query  118  AGAGAACCAATCGTGACTCTATGTGGTCATTTGTTCTGTTGGCCTTGTCTCTACAAGTGG  177
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  151  AGAGAACCGATCGTGACTCTATGTGGTCATTTGTTCTGTTGGCCTTGTCTCTACAAGTGG  210

Query  178  CTCCATTACCATTCTCAATCTAATCATTGTCCTGTTTGTAAAGCTTTGGTTAAGGAAGAT  237
            ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct  211  CTCCATTACCATTCTAAATCAAATCATTGTCCTGTTTGTAAAGCTTTGGTTAAGGAAGAT  270

Query  238  AGTCTGGTTCCTTTGTATGGAATGGGTAAGCCATCTTCTGACCCGAGATCGAAACTCAGT  297
            | | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct  271  ACTTTGGTTCCTTTGTATGGAATGGGTAAGCCATCTTCTGATCCGAGATCGAAACTCAAT  330

Query  298  TGTGGTGTTACTGTCCCTAATCGACCAGCTGCGACTAGGATTGAAACAGCTCGTCCTCGT  357
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct  331  AGTGGTGTTACTGTCCCTAATCGACCAGCTGCGACTAGGACTGAAACAGCTCGACCTCGT  390

Query  358  CTTGGAGAAAGACATCATGGGTCTAGTTTCTTTGGTGGGCATTCAGGTTTTGCTGCGATG  417
            |||| | |||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct  391  CTTGAACAAAGACATCATGGGTCTAGTTTCTTTGGTGGGCATTCAAGTTTTGCTGCCATG  450

Query  418  CCAACTGGTACACGGTTTTCCAACTTCTTGTTGTAATGGAATGTATCTTTTGATGAATCT  477
            |||||||||  ||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct  451  CCAACTGGTTTACGGTTTTCAAATTTCTTGTTGTAATGGAAAGTATCTTTTGATGAATCT  510

Query  478  GAGTAGACCGTGTTCTGtttttttttttGACAATGTTTTTGAAACTATTAT-A--CATTG  534
            ||||   |  |||| | ||||       ||||||||||||||||||||||| |  |||||
Sbjct  511  GAGT---C--TGTT-T-TTTT-------GACAATGTTTTTGAAACTATTATTATACATTG  556

Query  535  TCTACGATTTTTGTTATTTTGACTATTAATGTTTTGAGCTACATTTACA  583
            ||||||||||||||||||||||| |||||||||| ||||||| ||||||
Sbjct  557  TCTACGATTTTTGTTATTTTGACAATTAATGTTTAGAGCTACTTTTACA  605



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28030654026


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5