BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476640
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75020.1 | Symbols: LPAT4 | lysophosphatidyl acyltransferase... 2119 0.0
> AT1G75020.1 | Symbols: LPAT4 | lysophosphatidyl acyltransferase
4 | chr1:28171018-28173436 FORWARD LENGTH=1345
Length=1345
Score = 2119 bits (1147), Expect = 0.0
Identities = 1279/1341 (95%), Gaps = 16/1341 (1%)
Strand=Plus/Plus
Query 1 TGAGATTCGCATTCCTCTGTTC-T--ACCATTTAACAATTATCCTC-TTCGTCTTCGCCA 56
|||||||||||||||||||||| | |||||||||||||||||||| || ||||||||||
Sbjct 12 TGAGATTCGCATTCCTCTGTTCTTCCACCATTTAACAATTATCCTCTTTTGTCTTCGCCA 71
Query 57 ACTTCTTGCG-CTCTTCATACTTCTCCAGGTACTTG-C-TGCA-GTTTGTCTGGAAAAAA 112
||||||| || |||||||||||||||| || ||| | || | |||| |||||||||||
Sbjct 72 ACTTCTTCCGTTTCTTCATACTTCTCCA-GT-TTTGTCTTG-AGGTTTATCTGGAAAAAA 128
Query 113 GATGGAAGTTTGCGGGGATCTGAAATCTGATAACTTAAAGAACCGCCCCTTGACTCCGCT 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 GATGGAAGTTTGCGGGGATCTGAAATCTGATAACTTAAAGAACCGCCCCTTGACTCCGCT 188
Query 173 TAGGATTCTGAGGGGCTTGATGATTCTACTGGTGTTTCTCTCTACTGCTTTTATGTTCCT 232
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct 189 TAGGATTCTGAGGGGCTTGATGATCCTGCTGGTGTTTCTGTCTACTGCTTTTATGTTTCT 248
Query 233 GCTGTACTTTGCACCAATAGCTGCTCTAGGTCTACGGCTTCTGAGTGTGCATCAATCTAG 292
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 249 GCTGTACTTTGCACCAATAGCTGCTCTAGGTCTACGGCTTCTGAGTGTGCAACAATCTAG 308
Query 293 AAAAGTTATATCGTTAATCTTTGGTCTCTGGTTAGCTTTGTGGCCTTACCTGTTTGAAAC 352
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 AAAAGTTGTTTCGTTAATCTTTGGTCTCTGGTTAGCTTTGTGGCCTTACCTGTTTGAAAC 368
Query 353 GGTTAATGGGACAACCGTGTTGTTCTCTGGAGACATCATTCCGGTTGAGAAACGTGTTTT 412
|||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GGTTAACGGGACAACTGTGGTGTTCTCTGGAGACATCATTCCGGTTGAGAAACGTGTTTT 428
Query 413 GCTTATTGCAAATCACAGGACAGAGGTGGATTGGATGTATTTGTGGAATATTGCCTTAAG 472
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||
Sbjct 429 GCTTATTGCAAATCACAGGACGGAGGTGGATTGGATGTATCTGTGGAATATTGCCTTGAG 488
Query 473 AAAAGGGTGTCTTGGTTACATCAAATACGTGCTCAAGAGCAGCTTGATGAAATTACCTAT 532
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 AAAAGGCTGTCTTGGCTACATCAAATACGTGCTCAAGAGCAGCTTGATGAAATTACCTAT 548
Query 533 TTTTGGCTGGGG-TTTCCATGTTTTGGAGTTTATACCAGTGGAGAGGAAGCGGGAGGTCG 591
|||||| ||||| ||| ||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 549 TTTTGGTTGGGGCTTT-CATGTTTTGGAATTTATCCCGGTGGAGAGGAAGCGGGAGGTCG 607
Query 592 ACGAACCTGTTTTGCTTCAAATGCTTTCATCGTTTAAGGATCCTCAAGAACCCTTATGGC 651
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 608 ACGAACCTGTTTTGCTTCAAATGCTTTCATCTTTTAAGGATCCTCAAGAACCCTTATGGC 667
Query 652 TTGCTCTATTCCCGGAAGGAACCGATTTCACTGAAGAGAAATGCAAGAAAAGCCAAAAGT 711
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 668 TTGCTCTATTCCCTGAAGGAACCGATTTCACTGAAGAGAAATGCAAGAGAAGCCAAAAGT 727
Query 712 TTGCAGCTGAAGTTGGTCTTCCAGCACTATCAAACGTACTTCTACCAAAAACAAGGGGTT 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 TTGCAGCTGAAGTTGGTCTTCCAGCACTATCAAACGTACTTCTACCAAAAACAAGGGGTT 787
Query 772 TTGGCGTTTGCTTAGAAGTTCTTCATAACTCTTTGGATGCAGTATATGATTTGACTATCG 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TTGGCGTTTGCTTAGAAGTTCTTCATAACTCTTTGGATGCAGTATATGATTTGACTATCG 847
Query 832 CATATAAACCTCGCTGCCCATCTTTCATGGACAATGTATTCGGGACGGATCCTTCAGAAG 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CATATAAACCTCGCTGCCCATCTTTCATGGACAATGTATTCGGGACGGATCCTTCAGAAG 907
Query 892 TTCATATCCACGTTCGGCGAGTTCTTCTAAAGGAGATACCAGCAAACGAGGCAGAATCTT 951
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 908 TACATATCCACGTTCGGCGAGTTCTACTAAAGGAGATTCCAGCAAACGAGGCAGAATCTT 967
Query 952 CTGCTTGGTTAATGGATTCATTTCAGTTGAAGGACAAACTGCTATCCGATTTCAATGCTC 1011
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 968 CTGCTTGGTTAATGGATTCATTTAAGTTGAAGGACAAACTGCTATCCGATTTCAATGCTC 1027
Query 1012 AGGGGCAGTTCCCAAATCAAAGACCAGAAGAAGAACTGTCTGTTCTGAAGTGCATCGCAA 1071
||||| | ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 1028 AGGGGAAATTCCCCAATCAAAGACCAGAAGAAGAACTCTCTGTTCTCAAGTGCATTGCAA 1087
Query 1072 CATTTGCTGGGGTAATATCTTTGACAGTACTATTCATTTATCTAACCTTGTATTCACATA 1131
||||||| ||||||||||||||||||||| | ||||| ||||| ||||||||||||||||
Sbjct 1088 CATTTGCAGGGGTAATATCTTTGACAGTAGTGTTCATATATCTGACCTTGTATTCACATA 1147
Query 1132 GCTGTTTCAAAGTATATGCTTGTCTAAGCGGCACATATTTAACTTTTGCTACATATTACA 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 GCTGTTTCAAAGTATATGCTTGTCTAAGCGGCACATATTTAACTTTTGCTACATATTACA 1207
Query 1192 AGTTCCGACCCTCACCTGGCTGTTTTAGAGAAGATTCTTGTAAACAAGTTAAAAACCATT 1251
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1208 AGTTCCAACCCTCACCTGGCTGTTTTAGAGAAGATTCTTGTAAA---GTTAAAAACCATT 1264
Query 1252 AACTTTGTTGTAAATACAATTCTTTCTTTGTATAGAAAGAAATAATATTACAGGCAGAAA 1311
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1265 AACTTTGTTGTAAATACAATTCTTTCTTTGTATACAAAGAAATAATATTACAGGCAGAAA 1324
Query 1312 AGATTTCTGGGATGCCTTTTT 1332
| || ||||||||||||||||
Sbjct 1325 ATATCTCTGGGATGCCTTTTT 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5