BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476641
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75030.1 | Symbols: ATLP-3, TLP-3 | thaumatin-like protein 3... 1360 0.0
AT1G75050.1 | Symbols: | Pathogenesis-related thaumatin superf... 811 0.0
AT1G75040.1 | Symbols: PR5, PR-5 | pathogenesis-related gene 5 ... 556 9e-158
AT1G77700.1 | Symbols: | Pathogenesis-related thaumatin superf... 67.6 2e-10
> AT1G75030.1 | Symbols: ATLP-3, TLP-3 | thaumatin-like protein
3 | chr1:28174378-28175383 FORWARD LENGTH=909
Length=909
Score = 1360 bits (736), Expect = 0.0
Identities = 824/867 (95%), Gaps = 4/867 (0%)
Strand=Plus/Plus
Query 1 ATCATCCACATCACATAAACACAAAATCC--AATTT-GCAATGGCGAAAATCTCCAGTAT 57
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1 ATCATCCACATCACATAAACACAAAATCCGGTTTTTAATAATGGCGAAAATCTCCAGTAT 60
Query 58 TCACATTCTCTTCTTCGTGTTCATCACAAGTGGCATTGCTGATGCCGCCACCGTGTTCAC 117
|||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||
Sbjct 61 TCACATTCTCTTCTTCGTCTTCATCACAAGTGGCATTGCTGATTCCGCCACCGTATTCAC 120
Query 118 TTTACTGAACAGTTGTTCTTACACCGTCTGGCCGGGAACTCTCTCCGGCAACAGCGTCAC 177
||||| ||||||||| | |||||||| ||||||||||||||||||||||||||| ||||
Sbjct 121 TTTACAAAACAGTTGTGCGTACACCGTTTGGCCGGGAACTCTCTCCGGCAACAGCATCAC 180
Query 178 CCTCGGCGACGGCGGATTTCCCTTGACTCCAGGCGCTTCCGTACAGCTCACGGCTCCTAC 237
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 181 CCTCGGCGACGGCGGATTTCCCTTAACTCCAGGCGCTTCCGTGCAGCTCACGGCTCCTAC 240
Query 238 GGGATGGTCAGGCCGGTTCTGGGCTCGTACAGGCTGCAACTTTGATGCCTCCGGCCACGG 297
|| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 241 CGGTTGGTCAGGCCGGTTCTGGGCTCGTACCGGCTGCAACTTTGACGCCTCCGGTCACGG 300
Query 298 TACCTGCGTCACCGGAGACTGCGGCGGCGTTTTAAAATGTACCGGCGGCGGAGTTCCTCC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TACCTGCGTCACCGGAGACTGCGGCGGCGTTTTAAAATGTACCGGCGGCGGAGTTCCTCC 360
Query 358 AGCGACTCTAGCCGAATTCACCGTCGGATCAAGCAATGCCGGCATGGATTTCTACGACGT 417
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 AGCGACTCTAGCGGAATTCACCGTGGGATCAAGCAATGCCGGCATGGATTTCTACGACGT 420
Query 418 GAGCCTCGTCGACGGATACAATGTCAAGATGGGGATTAAACCTCAAGGAGGATTCGGAAA 477
||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 421 GAGCCTCGTCGACGGTTACAATGTAAAGATGGGGATAAAACCACAGGGAGGATTCGGAAA 480
Query 478 TTGCAAATACGCAGGCTGCGTCTCCGACATCAACGAGATTTGCCCTAGCGAGCTTAGGAT 537
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 TTGCAAATACGCAGGCTGCGTCTCGGACATCAACGAGATTTGCCCTAGCGAGCTTAGGAT 540
Query 538 CATGGATCCGAATTCAGGAAGTATCGCCGCGTGCAAGAGCGCTTGTGCGGCGTTTAATTC 597
||||||||||||||| |||||| |||| ||||| ||||||||||| |||||||||| |||
Sbjct 541 CATGGATCCGAATTCGGGAAGTGTCGCGGCGTGTAAGAGCGCTTGCGCGGCGTTTAGTTC 600
Query 598 GCCGGAATTTTGCTGTACTGGTGCTCACGCGACGCCGCAAACTTGTTCTCCGACGTATTA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCCGGAATTTTGCTGTACTGGTGCTCACGCGACGCCGCAAACTTGTTCTCCGACGTATTA 660
Query 658 CTCGTCCATGTTTAAGAACGCTTGCCCTAGCGCTTATAGTTACGCTTACGACGACGCTTC 717
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 661 CTCGTCCATGTTTAAGAACGCTTGTCCTAGCGCTTATAGTTACGCTTACGACGACGCATC 720
Query 718 GAGCACTTTCACTTGTACCGGATCTAACTACTTGATCACTTTCTGCCCTACCCAGTCTTA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGCACTTTCACTTGTACCGGATCTAACTACTTGATCACTTTCTGCCCTACCCAGTCTTA 780
Query 778 AA-CCGGAGCTCCGGTTTAGAATTGGGTTGGGTTTCTCTCTCTCACGTTTCTTTTGCTTG 836
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAACCGGAGCTCCGGTTTAGATTTGGGTTGGGTTTCTCTCTCTCACGTTTCTTTTGCTTG 840
Query 837 TTATGTACGGAAAGATAAATAAGGAAA 863
||||||||||||||| |||||| ||||
Sbjct 841 TTATGTACGGAAAGAGAAATAAAGAAA 867
> AT1G75050.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr1:28180116-28181062 FORWARD LENGTH=741
Length=741
Score = 811 bits (439), Expect = 0.0
Identities = 648/746 (87%), Gaps = 26/746 (3%)
Strand=Plus/Plus
Query 38 ATGGCGAAAAT-CTCCAGTATTCACATTCTCTTCTTCGTGTTCATCACAAGTGGCATTGC 96
|||||| || | ||| |||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 1 ATGGCG-AATTACTCAAGTATTCACATTCTCTTCTTGGTCTTCATCACAAGCGGCATTGC 59
Query 97 TG-AT--GCCGCCACCGTGTTCACTTTACTGAACAGTTGTTCTTACACCGTCTGGCCGGG 153
|| | ||||||||||| |||||||||| |||||||||| |||||||||| ||||| ||
Sbjct 60 TGTTTCCGCCGCCACCGTCTTCACTTTACAGAACAGTTGTCCTTACACCGTTTGGCCTGG 119
Query 154 AACTCTCTCCGGCAACAG-CGTCACCCTCGGCGACGGCGGATTTCCCTTGACTCCAGGCG 212
|| ||||||||||||| | | ||||||||||||||||||||||||||| || |||||||
Sbjct 120 AATTCTCTCCGGCAAC-GACAACACCCTCGGCGACGGCGGATTTCCCTTAACACCAGGCG 178
Query 213 CTTCCGTACAGCTCACGGCTCCTACGGGATGGTCAGGCCGGTTCTGGGCTCGTACAGGCT 272
||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||||
Sbjct 179 CTTCCGTACAGCTCACGGCTCCTGCAGGATGGTCAGGACGGTTCTGGGCTCGTACCGGCT 238
Query 273 GCAACTTTGATGCCTCCGGCCACGGTACCTGCGTCACCGGAGACTGCGGCGGCGTT-TTA 331
||||||| || |||||||||||||||| ||||| |||||||||||||||||| ||| ||
Sbjct 239 GCAACTTCGACGCCTCCGGCCACGGTAACTGCGGCACCGGAGACTGCGGCGGTGTTCTT- 297
Query 332 AAATGTACCGGCGGCGGAGTTCCTCCAG-CGACTCTAGCCGAATTCAC-CGTCGGATCAA 389
||||||| ||||||||||||||| |||| | ||||| || |||||||| | | | | |
Sbjct 298 AAATGTAACGGCGGCGGAGTTCCACCAGTC-ACTCTGGCTGAATTCACAC-T-TG-T-AG 352
Query 390 GCAATGCCGGCATGGATTTCTACGACGTGAGCCTCGTCGACGGATACAATGTCAAGATGG 449
|| | | ||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 353 GCGACGGCGGCAAGGATTTCTACGACGTGAGTCTCGTCGACGGTTACAATGTCGAGATGG 412
Query 450 GGATTAAACCTCAAGGAGGATT-CGGAAATTGCAAATACGCAGGCTGCGTCTCCGACATC 508
||||||||||||||||||| || ||| ||||| | ||||| ||||||||| ||||| ||
Sbjct 413 GGATTAAACCTCAAGGAGG-TTCCGGTGATTGCCATTACGCCGGCTGCGTCGCCGACGTC 471
Query 509 AACGAGATTTGCCCTAGCGAGCTTAGGATCATGGATCCGA-ATTCAGGAAGT-ATCGCCG 566
|||| | ||||||||| ||||||| || |||||||||| | || |||||| | ||||| |
Sbjct 472 AACGCGGTTTGCCCTAACGAGCTTCGGCTCATGGATCC-ACATACAGGAA-TCATCGCGG 529
Query 567 CGTGCAAGAGCGCTTGTGCGGCGTTTAATTC-GCCGGAATTTTGCTGTACTGGTGCTCAC 625
|||| || ||||||||||||||||||||||| | ||| || || ||||| |||||||||
Sbjct 530 CGTGTAAAAGCGCTTGTGCGGCGTTTAATTCTG-AGGAGTTCTGTTGTACCGGTGCTCAC 588
Query 626 GCGACGCCGCAAACTTGTTCTCCGACGTATTACTCGTCCATGTTTAAGAA-CGCTTGCCC 684
||||||||||||||||||||||||||| |||||||| | |||||||| || |||||||||
Sbjct 589 GCGACGCCGCAAACTTGTTCTCCGACGCATTACTCGGCGATGTTTAA-AAGCGCTTGCCC 647
Query 685 TAGCGCTTATAGTTACGCTTACGACGACGCTTCGAGCACTTTCACTTGTACCGGATCTAA 744
| | ||||| |||||||| ||||||||||| ||||||| |||||||||||||| |||||
Sbjct 648 TGGTGCTTACAGTTACGCCTACGACGACGCCACGAGCACCTTCACTTGTACCGGCTCTAA 707
Query 745 CTACTTGATCACTTTCTGCCCTACCC 770
|||||||||| |||||||||| ||||
Sbjct 708 CTACTTGATCTCTTTCTGCCCCACCC 733
> AT1G75040.1 | Symbols: PR5, PR-5 | pathogenesis-related gene
5 | chr1:28177703-28178940 FORWARD LENGTH=980
Length=980
Score = 556 bits (301), Expect = 9e-158
Identities = 678/850 (80%), Gaps = 66/850 (8%)
Strand=Plus/Plus
Query 38 ATGGCGAAA-ATCTCCAGTATTCACATTCTCTTCTTCGTGTTCATCACAAGTGGCATTGC 96
||||| ||| |||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 52 ATGGC-AAATATCTCCAGTATTCACATTCTCTTCCTCGTGTTCATCACAAGCGGCATTGC 110
Query 97 TG--ATGCCGCCACCGTGTTCACTTTACTGAACAGTTGTTCTTA-CACCGTCT-GGCCGG 152
|| ||| ||||| | |||||| || ||||| ||| | || |||||||| |||| |
Sbjct 111 TGTTATG--GCCACAGACTTCACTCTAAGGAACAATTG-CCCTACCACCGTCTGGGCC-G 166
Query 153 GAACTCTCTCCGG-CAACAG-CGTCACCCTCGGCGACGGCGGATTTCCCTTGACTCCAGG 210
|||||||| |||| ||| | | || |||||||| || |||||| |||||||||||
Sbjct 167 GAACTCTCGCCGGTCAA-GGAC-CCAAGCTCGGCGATGGAGGATTTGAATTGACTCCAGG 224
Query 211 CGCTT-CCGTACAGCTCACGGCTCCTACGGGATGGTCAGGCCGGTTCTGGGCTCGTACAG 269
|||| ||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 225 TGCTTCCCG-ACAGCTCACGGCTCCTGCAGGATGGTCAGGCCGGTTCTGGGCTCGTACAG 283
Query 270 GCTGCAACTTTGATGCCTCCGGCCACGGTACCTGCGTCACCGGAGACTGCGGCGGCGTTT 329
||||||||||||| |||||||| |||||| || || ||||||||||| ||||| | |
Sbjct 284 GCTGCAACTTTGACGCCTCCGGAAACGGTAGATGTGTAACCGGAGACTGTGGCGG--TCT 341
Query 330 TAAAATGTACCGGCGGCGGAGTTCCTCCAG-CGACTCTAGCCGAATTCAC-CGTCGGATC 387
|| ||||| |||||||||||||||||| | | ||||| || |||||||| | | | |
Sbjct 342 -AAGATGTAACGGCGGCGGAGTTCCTCCCGTC-ACTCTGGCTGAATTCACTC-TAG--T- 395
Query 388 AAGCAATGCCGGCATGGATTTCTACGACGTGAGCCTCGTCGACGGATACAATGTCAAGAT 447
| || ||| ||||| ||||||||||| ||||||||||| || || |||||||||||| |
Sbjct 396 AGGCGATGGCGGCAAAGATTTCTACGATGTGAGCCTCGTAGATGGTTACAATGTCAAGCT 455
Query 448 GGGGATTAA-ACC-TCAAGGAGGATTCGGAA-ATTGCAAATACGCAGGCTGCGTCTCCGA 504
|||||| || ||| || ||||||| ||| | ||||||||||||||||||| ||||| ||
Sbjct 456 GGGGAT-AAGACCATCC-GGAGGAT-CGGGAGATTGCAAATACGCAGGCTGTGTCTCTGA 512
Query 505 CATCAACGAGATTTGCCCT-AGCGA-GCTTA-GGATCATGGATCCGAATTCAGGAAGTAT 561
| |||||| | |||||| | | | ||||| || ||||||||| ||| || | ||
Sbjct 513 CCTCAACGCGGCTTGCCCCGA-C-ATGCTTAAGG-TCATGGATCAGAA--CA--ATGT-- 563
Query 562 CGCCGCGTGCAAGAGCGCTTGTGCG-GCGTTTAATTCGCCGGAATTTTGCTGTAC-TGGT 619
|| || |||||||| || |||| | | ||||||| || ||| |||||| | |||
Sbjct 564 CGTGGCCTGCAAGAGTGCCTGTGAGAG-GTTTAATACGGATCAATATTGCTGC-CGTGGA 621
Query 620 GCTCACGCGACGCCGCAAACTTGTTCTCCGACGTATTACTCGTCCATGTTT-AAGAACGC 678
||| ||| | |||| |||||||| |||| ||| | |||||| || ||| ||||||||
Sbjct 622 GCTAACGATAAGCCGGAAACTTGTCCTCCCACGGACTACTCGAGGAT-TTTCAAGAACGC 680
Query 679 TTGCCCT-AGCGCTTATAGTTACGCTTACGACGACGCTTCGAGCACTTTCACTTGTACCG 737
||||||| | ||| ||||| |||||||| ||||||| ||||||| |||||||||||||
Sbjct 681 TTGCCCTGA-CGCCTATAGCTACGCTTATGACGACGAAACGAGCACCTTCACTTGTACCG 739
Query 738 GATCTAACTACTTGATCACTTTCTGCCCT-ACCCAGTCTTAAACCGGAGCTCCG-GTTTA 795
|| |||||||| ||||||||||||||| | | |||||| |||| || ||| |
Sbjct 740 GAGCTAACTACGAAATCACTTTCTGCCCTTA---A-----AAACCGAAGCTTCGAGTT-A 790
Query 796 GAATTGGGTTGGGTTTC-TC-TCTCTCACGTTTCTTTTGCTTGTTATGTACGGAAAGATA 853
|| | || |||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 791 GA-TACAGTCGGGTTTAATTATCTCTCACGTTTCTTTTGCTTATTATGTACGGAAAGATA 849
Query 854 AATAAGGAAA 863
||||||||||
Sbjct 850 AATAAGGAAA 859
> AT1G77700.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr1:29204747-29206217 FORWARD LENGTH=1071
Length=1071
Score = 67.6 bits (36), Expect = 2e-10
Identities = 43/46 (93%), Gaps = 2/46 (4%)
Strand=Plus/Plus
Query 395 GCCGGCA-TGGATTTCTACGACGTGAGCCTCGTCGACGGATACAAT 439
||| ||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 535 GCC-GCATTGGATTTCTACGACGTGAGCCTCGTCGACGGATTCAAT 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42096215186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5