BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476644
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75060.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1400 0.0
AT1G19330.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 603 1e-171
> AT1G75060.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G19330.2);
Has 104 Blast hits to 104 proteins in 22 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28181275-28183503
REVERSE LENGTH=1153
Length=1153
Score = 1400 bits (758), Expect = 0.0
Identities = 891/952 (94%), Gaps = 22/952 (2%)
Strand=Plus/Plus
Query 136 AAATGCTGGAAGCTGCGAAGAACAACTCAAGCATCCTCAATggaggaggaggaggaggag 195
|||||||||||||| || |||||| ||||||||||||||| |||||||||||||
Sbjct 217 AAATGCTGGAAGCTCCGGTGAACAAGTCAAGCATCCTCAAT------GGAGGAGGAGGAG 270
Query 196 gaTTCTCTCAGCTACAAAGTTGCTTCGGCGATTGCAGTAGCGAAGAAGAATTATCTGTGT 255
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 271 GATTCTCTCAGCTACAGAGTTGCTTCGGCGATTGCAGTAGCGAAGAAGAATTGTCAGTGT 330
Query 256 TGCCACGTCATACCAAAGTCATCGTTACCGGAAACAACCGTACCAAATCCGTACTCGTCG 315
||||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||
Sbjct 331 TGCCACGTCATACCAAAGTTGTCGTTACTGGAAACAACCGTACCAAATCTGTTCTCGTCG 390
Query 316 GTCTTCAAGGCGTCGTTAAAAAAGCCGTCGGACTCGGTGGTTGGCATTGGCTGGTTCTGA 375
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 391 GTCTTCAAGGCGTCGTTAAGAAAGCCGTCGGACTCGGTGGTTGGCATTGGCTGGTTTTGA 450
Query 376 CAAATGGCATAGAAGTGAAGTTGCAGAGGAATGCGCTTAGTGTTCTTGAACATCCTATAG 435
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 451 CTAATGGAATTGAAGTGAAGTTGCAGAGGAATGCGCTTAGTGTTCTTGAACATCCTACAG 510
Query 436 GGAACGAAGAAGACAATGATCTTGAAGTCGACCATACTACACAGTGGAATAATCCTTCCG 495
||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||
Sbjct 511 GGAACGAAGAAGACAATGATCTTGAAGTCGACCATTCTACACAGTGGAATCATCCCTCCG 570
Query 496 ATATGACAACTGAGGACACTTTGAAGCCTCATAAGTCGAAGCAGAGAGGACACAGATCAT 555
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 571 ATATGACAACTGAGGACACTTTGAAGCCTCATAAGTCGAAGAAGAGAGGACACAGATCAT 630
Query 556 CGCGGTTATCTCAAAAGGCTTTGTGCAGGGCAGTTTCTTGTGACTCACACTCAAAAAACT 615
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 631 CGCGGTTATCTCAAAAGGCTTTGTACAGGGAAGTTTCTTGTGACTCACACTCAAAAATCT 690
Query 616 CGAGTATTACTCCTCG-CATGAACATGAAGGTTGATCTTACCAAGTTGGATATGGCTGCA 674
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 691 CGAGTATTACTCCTCGTC-TGAACATGAAGGTTGATCTTACCAAGTTGGATATGGCTGCA 749
Query 675 TTACTGAGATATTGGCGACATTTTAACCTCGTGGATGCTCTTCCAAATCCAACAAAGGAG 734
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 750 TTACTGAGATATTGGCGACATTTTAACCTCGTGGATGCTCTTCCGAATCCCACAAAGGAG 809
Query 735 CAACTGATTGACATTATTCAGAGACACTTCATGTCTCAGCAAATGGATGAGCTTCAGGTT 794
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 CAACTAATTGACATTATTCAGAGACACTTCATGTCTCAGCAAATGGATGAGCTTCAGGTT 869
Query 795 ATCGTGGGATTCGTTCAGGCTGCAACAGGAATGAAGAAGGCTTGCCAAGTGGAAG-CCAA 853
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 870 ATTGTGGGATTCGTTCAGGCTGCAACAGGAATGAAGAAGGCTTGCCAAGTGGAAGACCAA 929
Query 854 AAGAAGCCAGAAACACTGATCTTTAACTGCATCAGCTAAATATCCTTCAATAGACTAACA 913
| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 930 A-GAAGCCAGAAACACTGATCCTTAACTGCATCAGCTAAATCTCCTTTAATAGACTAACA 988
Query 914 AAAATCTGTCGAATCTGCGCGGGTCACATGTTTTAACCATTCCGCGGCTTAAAAAGTTTG 973
|| | | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 989 AA--T------A-TCTGCGCGGGTCACATGTTTTAATCATTCCGCGGCTTAAAAAGTTTG 1039
Query 974 AGTATAGTAGTTTAGCTCTCTCTCTTTTGGGTAAACACTAGTAGTTGTTATTGCTCTCTC 1033
||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1040 GGTAAA-TAGTTTAGCTCTCTCTCTTTTGG-TAAACACTAGTAGTTGTTATTGCTCTCTC 1097
Query 1034 ATGTAAGTAAGTC-ATCAGGAACAAAATGACATGAAACAAAGAAAATCTCTA 1084
|||||| || ||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 1098 ATGTAATTAGGTCCATCAAGAACAAAATGATATGAAACAAAGAAAATCTCTA 1149
Score = 185 bits (100), Expect = 6e-46
Identities = 128/140 (91%), Gaps = 7/140 (5%)
Strand=Plus/Plus
Query 1 ACTCTGCTTTTTCCTCTTTC-TCTCTCACTCTTACTCTGTCTTTCTTCATCAGACCaaaa 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 8 ACTCTGCTTTTTCCTCTTTCTTCTCTCACTCTTACTCTGTCTTTCTTCATCAGACCAAAA 67
Query 60 a-aa-CCCTAATTTCGT-AGCTCGATTTCTCTCTTATTTCATCTCTCAATCCTTTC-CAA 115
| || |||||||||| | |||||||||||||||||| | ||| ||||||||||| | |||
Sbjct 68 ACAAACCCTAATTTC-TCAGCTCGATTTCTCTCTTACTCCATTTCTCAATCCTT-CACAA 125
Query 116 AATGCAACAACTTCCGTTTC 135
|||||| |||||||| ||||
Sbjct 126 AATGCACCAACTTCCATTTC 145
> AT1G19330.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1).
| chr1:6680563-6683533 REVERSE LENGTH=1251
Length=1251
Score = 603 bits (326), Expect = 1e-171
Identities = 598/725 (82%), Gaps = 36/725 (5%)
Strand=Plus/Plus
Query 192 ggaggaTTCTCTCAGCTACAAAG-TTGCTT-CGGCGATTGCAGTAGCGAAGAAGAATTAT 249
||||||||| | ||| | || || || || ||||||||||||||| |||||||| ||||
Sbjct 280 GGAGGATTCCCGCAGATTCAGAGCTT--TTACGGCGATTGCAGTAGTGAAGAAGAGTTAT 337
Query 250 CTGTGTTGCCACGTCATACCAAAGTCATCGTTACCGGAAACAACCGTACCAAATCCGTAC 309
| || |||||||||||||| ||||| | || |||||||||||||| || ||||| || |
Sbjct 338 CGGTATTGCCACGTCATACAAAAGTGGTGGTCACCGGAAACAACCGGACGAAATCGGTGC 397
Query 310 TCGTCGGTCTTCAAGGCGTCGTTAAAAAAGCCGTCGGACTCGGTGGTTGGCATTGGCTGG 369
| || ||||||||||| || || |||||||| ||||| ||||||||||||||||||||||
Sbjct 398 TTGTTGGTCTTCAAGGTGTTGTCAAAAAAGCTGTCGGTCTCGGTGGTTGGCATTGGCTGG 457
Query 370 TTCTGACAAATGGCATAGAAGTGAAGTTGCAGAGGAATGCGCTTAGTGTTCTTGAACATC 429
|| |||||||||| |||||||| |||||||||||||||||||||||||| ||||||| ||
Sbjct 458 TTTTGACAAATGGAATAGAAGTAAAGTTGCAGAGGAATGCGCTTAGTGTCCTTGAACCTC 517
Query 430 CTA-TAGGGAACGAAGAAGACAATGATCTTGAAGTCGACCATACTACACA-G--T-G--- 481
||| | || |||||||||||| |||||||||| |||| | || ||| | | | |
Sbjct 518 CTACT-GGAAACGAAGAAGACGATGATCTTGATTTCGAAAACAC-ACAGAGGAATGGCTC 575
Query 482 -GA-ATAATCCTTCCGATAT-GA-CAACTGAGGACACTTTGAAGCCTCATAAGTCGAAGC 537
|| || || || | | | | || |||||||||| |||||||||||||||||||||
Sbjct 576 TGATATGATTGTTTC-TTTTCCAGCATCTGAGGACACACTGAAGCCTCATAAGTCGAAGC 634
Query 538 -AGAGAGGACACAGATCATCGCGGTTATCTCAAAAGGCTTTGTGCAGGGCAGTTTCTTGT 596
| ||||| || |||||||| |||| |||||| ||| | || ||||| | | || | |
Sbjct 635 TA-AGAGGGCAGAGATCATCTCGGTCATCTCACAAGACGATGAGCAGGTCTCTATCATCT 693
Query 597 GACTCACACTCAAAAAACTCGAGTATTACTCCTCGCATG--AACAT---GAAGGTTGATC 651
||||| || ||||||| ||| || ||||||||| | || ||||| |||||||||||
Sbjct 694 GACTCGCAATCAAAAAGTTCGGGTTTTACTCCTC-C-TGAAAACATGCAGAAGGTTGATC 751
Query 652 TTACCAAGTTGGATATGGCTGCATTACTGAGA-TATTGGCGACATTTTAACCTCGTGGAT 710
||| ||| ||||| ||| |||| ||||||| | |||||||||||||||||||| ||||||
Sbjct 752 TTAGCAAATTGGAAATGCCTGCTTTACTGA-ATTATTGGCGACATTTTAACCTTGTGGAT 810
Query 711 GCTCTTCCAAATCCAACAAAGGAGCAACTGATTGACATTATTCAGAGACACTTCATGTCT 770
|| ||||||||||| ||||||||||||| ||||||||| |||| || ||||||||||||
Sbjct 811 GCAATTCCAAATCCATCAAAGGAGCAACTAATTGACATTGTTCAAAGGCACTTCATGTCT 870
Query 771 CAGCAAATGGATGAGCTTCAGGTTATCGTGGGATTCGTTCAGGCTGCAACAG-GAATGAA 829
|||||||||||||||||||||||||| ||||| || || || ||||||| || |||||||
Sbjct 871 CAGCAAATGGATGAGCTTCAGGTTATTGTGGGGTTTGTCCAAGCTGCAA-AGAGAATGAA 929
Query 830 GAAGGCTTGCCAAGTGG-AAGCCAAAAGAAGCCAGAAACACTGATCTTTAACTGCATCAG 888
|||||||||| |||| || ||||| ||| ||||||||||||||||| |||||||||||
Sbjct 930 GAAGGCTTGC-AAGTTTCAATCCAAA-GAATCCAGAAACACTGATCTT-AACTGCATCAG 986
Query 889 CTAAA 893
|||||
Sbjct 987 CTAAA 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53112176610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5