BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476647
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75080.1 | Symbols: BZR1 | Brassinosteroid signalling positi... 1934 0.0
AT1G19350.3 | Symbols: BES1, BZR2 | Brassinosteroid signalling ... 928 0.0
AT1G75090.1 | Symbols: | DNA glycosylase superfamily protein |... 390 2e-107
> AT1G75080.1 | Symbols: BZR1 | Brassinosteroid signalling positive
regulator (BZR1) family protein | chr1:28185504-28187410
FORWARD LENGTH=1563
Length=1563
Score = 1934 bits (1047), Expect = 0.0
Identities = 1199/1270 (94%), Gaps = 20/1270 (2%)
Strand=Plus/Plus
Query 4 TTGGAGAAGAAAGAGAGA---TTCTGCTTCGATTCCAGCGAAGGAAAAGCGTATTCCTCG 60
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 25 TTGGAGAAGAAAGAGAGATTCTTCTTCTTCGATTCCAGCGAAGGAAAAGCGTATTCCTCG 84
Query 61 TGAGCACTAACTTCTCACTCCtctcttcttcttcttcttcAGTCTACGTTCACACAATCT 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 85 TGAGCACTAACTTCTCACTCCTCTCTTCTTCTTCTTCATCAGTCTACGTTCACACAATCT 144
Query 121 TTCACCCACCCATTTAAAGCTCTCT-CGGAGGTTTCGA--GG--GG--CTTGGTTTT-CT 172
|||||||||| ||| |||||||||| |||| ||||||| || || |||||||| |
Sbjct 145 TTCACCCACCTATTCAAAGCTCTCTCCGGAAGTTTCGAGGGGTTGGTTGTTGGTTTTCCC 204
Query 173 GATGACGTCGGATGGAGCTACGTCGACATCAGCAGCTGCGGCTGCGGCGGCGGCAGCAGC 232
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 205 GATGACTTCGGATGGAGCTACGTCGACATCAGCAGCTGCAGCTGCGGCGGCGGCAGCAGC 264
Query 233 GGCgaggaggaagccgtcgtggagggaaagggagaataatcggaggagagagagacggag 292
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 265 GGCGAGGAGGAAGCCGTCGTGGAGAGAAAGGGAGAATAATCGGAGGAGAGAAAGACGGAG 324
Query 293 aagagCTGTAGCTGCGAAGATATATACTGGGCTTAGAGCTCAAGGTGATTATAATTTGCC 352
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 325 AAGAGCTGTAGCTGCGAAGATATACACTGGGCTTAGAGCTCAAGGTGATTATAATTTGCC 384
Query 353 TAAACATTGTGATAATAATGAAGTCCTCAAAGCTCTTTGTGTTGAAGCTGGTTGGGTTGT 412
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 385 TAAACATTGTGATAATAATGAAGTCCTTAAAGCTCTTTGTGTTGAAGCTGGTTGGGTTGT 444
Query 413 TGAAGAAGATGGTACTACTTATCGCAAGGGATGCAAGCCTTTACCTGGTGAGATGGCTGG 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 445 TGAAGAAGATGGTACTACTTATCGCAAGGGATGCAAGCCTTTACCTGGTGAGATAGCTGG 504
Query 473 GACTTCATCTCGAGTTACTCCATACTCATCACAGAACCAGAGCCCTCTTTCATCGGCCTT 532
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 505 GACTTCATCTCGAGTAACTCCATATTCATCACAGAACCAGAGCCCTCTTTCATCAGCCTT 564
Query 533 TCAAAGCCCCATCCCGTCTTACCAAGTTAGCCCGTCTTCTTCGTCTTTCCCGAGTCCTTC 592
|||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 565 TCAAAGTCCCATCCCATCTTACCAAGTTAGCCCGTCTTCTTCATCATTCCCGAGTCCTTC 624
Query 593 TCGCGGTGAACCAAATAACAACATCTCCTCTACATTCTTCCCCTTCCTCAGAAATGGTGG 652
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 625 TCGCGGTGAACCAAATAACAACATGTCCTCTACATTCTTCCCTTTCCTCAGAAATGGTGG 684
Query 653 CATTCCTTCCTCTCTTCCTTCCCTCAGAATCTCAAACAGTTGCCCTGTCAcccccccGGT 712
||||||||| |||||||||||||||||||||||||||||||| || || ||||| |||||
Sbjct 685 CATTCCTTCTTCTCTTCCTTCCCTCAGAATCTCAAACAGTTGTCCAGTTACCCCACCGGT 744
Query 713 CTCATCACCGACTTCCAAGAACCCTAAACCGTTGCCCAACTGGGAATCTATCGCTAAGCA 772
|||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 745 CTCATCGCCGACTTCTAAGAACCCGAAACCGTTGCCTAACTGGGAATCTATCGCTAAGCA 804
Query 773 ATCCATGGCCATTGCTAAACAATCCATGGCGTCTTTTAACTATCCTTTCTATGCGGTTTC 832
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 805 ATCCATGGCCATTGCTAAACAATCAATGGCGTCTTTTAATTATCCTTTCTATGCGGTTTC 864
Query 833 TGCACCTGCTAGTCCAACACATCGCCA--A-TTTCATACCCCGGCTACTATACCTGAATG 889
||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 865 TGCACCTGCTAGTCCGACACATCGCCACCAGTTTCATACCCCGGCTACTATACCTGAATG 924
Query 890 TGATGAGTCTGACTCTTCAACTGTTGATTCTGGTCATTGGATAAGCTTTCAGAAGTTTGC 949
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TGATGAGTCTGACTCTTCCACTGTTGATTCTGGTCATTGGATAAGCTTTCAGAAGTTTGC 984
Query 950 ACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCTCCTACCTTCAATCTTGTGAA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 ACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCTCCTACCTTCAATCTTGTGAA 1044
Query 1010 ACCCGCGCCTCAGCAGATGTCTCCAAATACTGCTGCGTTCCAAGAGATTGGTCAAAGCTC 1069
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1045 ACCTGCGCCTCAGCAGATGTCTCCAAATACTGCTGCCTTCCAAGAGATTGGTCAAAGCTC 1104
Query 1070 TGAATTTAAATTTGAGAATAGCCAAGTTAAGCCTTGGGAAGGAGAGAGGATACATGATGT 1129
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1105 TGAGTTTAAATTTGAGAATAGCCAAGTTAAACCCTGGGAAGGAGAGAGGATACATGATGT 1164
Query 1130 GGGTATGGAGGATCTTGAGCTTACACTTGGAAACGGGAAGGCTCGTGGTTGACATAAACA 1189
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1165 GGGTATGGAGGATCTTGAGCTTACACTTGGAAATGGGAAGGCTCGTGGTTGACATAAACA 1224
Query 1190 ACTCAA-CAAAGTCGGATGGCATGTCGAT-GGAATTTGAGAAACCAATCCTCCTGAGT-T 1246
||| | |||| | |||||||||| || ||||| |||||||| ||||||| ||||| |
Sbjct 1225 ACT-AGGCAAACCCAAATGGCATGTC-ATTGGAATATGAGAAACTAATCCTCTTGAGTAT 1282
Query 1247 TCTTCATCTT 1256
| ||| ||||
Sbjct 1283 T-TTCTTCTT 1291
> AT1G19350.3 | Symbols: BES1, BZR2 | Brassinosteroid signalling
positive regulator (BZR1) family protein | chr1:6688535-6690411
FORWARD LENGTH=1465
Length=1465
Score = 928 bits (502), Expect = 0.0
Identities = 860/1029 (84%), Gaps = 40/1029 (4%)
Strand=Plus/Plus
Query 173 GATGACGTCGGATGGAGCTACGTCGACATCAGCAGCTGCGGCTGCGGCGGCGGCAGCA-- 230
||||||||| || ||||| |||||||| | ||||||| ||||| || || || | |
Sbjct 211 GATGACGTCTGACGGAGCAACGTCGACGT---CAGCTGCAGCTGCAGCAGCAGC-G-ATG 265
Query 231 GCGGCgaggaggaagccgtcgtggagggaaagggagaataatcggaggagagagagacgg 290
||| |||||||||| ||||||||||| || |||||||| |||||||| |||||| | |||
Sbjct 266 GCGACGAGGAGGAAACCGTCGTGGAGAGAGAGGGAGAACAATCGGAGAAGAGAGCGGCGG 325
Query 291 agaagagCTGTAGCTGCGAAGATATATACTGGGCTTAGAGCTCAAGGTGATTATAAT-TT 349
||||||||||| || |||||||| |||||||| ||||||||||||||| | || ||| ||
Sbjct 326 AGAAGAGCTGTTGCGGCGAAGATTTATACTGGTCTTAGAGCTCAAGGTAACTACAATCTT 385
Query 350 GCCTAAACATTGTGATAATAATGAAGTCCTCAAAGCTCTTTGTGT-TGAAGCTGGTTGGG 408
|| ||||||||||| || ||||| || || || ||||||||| | ||||||||||||||
Sbjct 386 -CCAAAACATTGTGACAACAATGAGGTTCTTAAGGCTCTTTGT-TCTGAAGCTGGTTGGG 443
Query 409 TTGTTGAAGAAGATGGTACTACTTATCGCAAGGGATGCAAGCCTTTACCTGGTGAGATGG 468
||||||||||||| || |||||||||||||||||| ||||||| |||||||||| ||||
Sbjct 444 TTGTTGAAGAAGACGGAACTACTTATCGCAAGGGACACAAGCCTCTACCTGGTGACATGG 503
Query 469 CTGGGA-CTTCATCTCGAGTTACTCCATACTCATCACAGAACCAGAGCCCTCTTTCATCG 527
|| ||| | || ||||||| ||||| ||||| || || ||||| || |||||||| ||
Sbjct 504 CT-GGATCATCTTCTCGAGCAACTCCTTACTCTTCCCATAACCAAAGTCCTCTTTCTTCC 562
Query 528 GCCTTTCAAAGCCCCATCCCGTCTTACCAAGTTAGCCCGTCTTCTTCGTCTTTCCCGAGT 587
| ||| | ||||||||| ||||||||||| || || || ||||| || |||||||||
Sbjct 563 ACTTTTGATAGCCCCATCTTATCTTACCAAGTCAGTCCTTCCTCTTCTTCATTCCCGAGT 622
Query 588 CCTTCTC--G-CGGTGAACCAAATAACAACATCTCCTCTACATTCTTCCCCTTCCTCAGA 644
||||||| | ||||| || | |||| |||| | | ||| ||||||| ||||||||
Sbjct 623 CCTTCTCGAGTTGGTGATCC--A-CACAATATCT-C-C-ACAATCTTCCCTTTCCTCAGG 676
Query 645 AATGGTGGCATTCCTTCCTCTCTTCCTTCC-CTCAGAATCTCAAACAGTTGC-CCTGTCA 702
|||||||| |||||||| || ||||| ||| || |||||||||||||| ||| |||||||
Sbjct 677 AATGGTGGTATTCCTTCATCGCTTCC-TCCACTTAGAATCTCAAACAG-TGCTCCTGTCA 734
Query 703 cccccccGGTCTCATCACCGACTTCCAAG-AACCCTAAACCGTTGCCCAAC-TGGGAATC 760
| || || || ||||| || |||| | || ||||| ||||| ||| || || ||||||||
Sbjct 735 CTCCACCAGTGTCATCCCCAACTT-CTAGAAACCCCAAACCATTG-CCTACTTGGGAATC 792
Query 761 TATCGCTAAGCAATCCATGGCCAT---TGCTAAACAATCCATGGCGTCTTTTAACTATCC 817
| | | || ||||||||| |||| ||||||||| || ||| | ||||| ||||| ||
Sbjct 793 TTTTACCAAACAATCCATGTCCATGGCTGCTAAACAGTCAATGACTTCTTTGAACTACCC 852
Query 818 -TTTCTATGCGGTTTCTGCACCTGCTAGTCC-A-ACA-CATCGCCAATTTCATACCCCGG 873
||| |||||||| ||||||||||| ||||| | || |||||||| || ||| | ||||
Sbjct 853 GTTT-TATGCGGTGTCTGCACCTGCCAGTCCTACTCATCATCGCCAGTTCCATGCTCCGG 911
Query 874 CTACTATACCTGAATGTGATGAGTCTGACTCTTCAACTGTTGATTCTGGTCATTGGATAA 933
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 912 CTACTATACCTGAATGTGATGAGTCTGACTCTTCCACTGTTGATTCTGGTCATTGGATAA 971
Query 934 GCTTTCAGAAGTTTGCACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCTCCTA 993
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 972 GCTTTCAAAAGTTTGCACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCGCCTA 1031
Query 994 CCTTCAATCTTGTGAAACCCGCGCCTCAGCAGAT-GTCTCCAAATACTGCTGCGTTCCAA 1052
|||||||||| |||||||| || || ||||| || ||||||||| || || || |||||
Sbjct 1032 CCTTCAATCTCGTGAAACCTGCACCACAGCA-ATTGTCTCCAAACACAGCAGCAATCCAA 1090
Query 1053 GAGATTGGTCAAAGCTCTGAATTTAAATTTGAGAATAGCCAAGTTAAGCCTTGGGAAGGA 1112
||||||||||||||||| || ||||| |||||||| |||||||||||||| ||||||||
Sbjct 1091 GAGATTGGTCAAAGCTCCGAGTTTAAGTTTGAGAACAGCCAAGTTAAGCCATGGGAAGGG 1150
Query 1113 GAGAGGATACATGATGTGGGTATGGAGGATCTTGAGCTTACACTTGGAAACGGGAAGGCT 1172
|||||||| |||||||||| |||||||||||| ||||| || |||||||| || || |||
Sbjct 1151 GAGAGGATCCATGATGTGGCTATGGAGGATCTAGAGCTCACGCTTGGAAATGGTAAAGCT 1210
Query 1173 CGTGGTTGA 1181
| | |||||
Sbjct 1211 CATAGTTGA 1219
> AT1G75090.1 | Symbols: | DNA glycosylase superfamily protein
| chr1:28187447-28189725 REVERSE LENGTH=1303
Length=1303
Score = 390 bits (211), Expect = 2e-107
Identities = 235/247 (95%), Gaps = 0/247 (0%)
Strand=Plus/Minus
Query 1272 TTACATTCTTGGTACCGGTAGCAAGCTGTGAGATGATCATTCACAATGCCAGAGGCCTGC 1331
|||||||||||||| | | | |||||||||||||||||||| ||||||||||||||||||
Sbjct 1027 TTACATTCTTGGTATCTGAAACAAGCTGTGAGATGATCATTAACAATGCCAGAGGCCTGC 968
Query 1332 AAGAAGGAATAAATAACAGTAGGACCAACGCAGCGAAACCCTCTCTGCATCATATCTTTG 1391
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 AAGAAGGAATACATAACAGTAGGACCAACGCAGCGAAACCCTCTCTGCATCATATCTTTG 908
Query 1392 CTTATGTACTCTGCCTTTGGGGACTTAACCGGTACTTGACGACCATATCGATAGCCATTT 1451
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CTAATGTACTCTGCCTTTGGGGACTTAACCGGTACTTGACGACCATATCGATAGCCATTT 848
Query 1452 CTTAATGGCTTGTGGTTCACAAATCTCCAACAATAGTTGCTAAATGATCCAAATTCTTGC 1511
||||||||||||||||||||||||||||||||||| || || || ||||||||||| |||
Sbjct 847 CTTAATGGCTTGTGGTTCACAAATCTCCAACAATAATTACTGAACGATCCAAATTCCTGC 788
Query 1512 TTGACCT 1518
|||||||
Sbjct 787 TTGACCT 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75300817500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5