BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476651
Length=1373
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75120.1 | Symbols: RRA1 | Nucleotide-diphospho-sugar transf... 1986 0.0
AT1G75110.1 | Symbols: RRA2 | Nucleotide-diphospho-sugar transf... 1013 0.0
> AT1G75120.1 | Symbols: RRA1 | Nucleotide-diphospho-sugar transferase
family protein | chr1:28196857-28198802 REVERSE LENGTH=1520
Length=1520
Score = 1986 bits (1075), Expect = 0.0
Identities = 1288/1389 (93%), Gaps = 22/1389 (2%)
Strand=Plus/Plus
Query 1 TTATATAAGATTAACTTGCACTTCTACGATTTGATCATAGAGGAAAGAAAGGGGTTTATC 60
|||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||||||
Sbjct 35 TTATATAAGATTAACTTGCACTACTAGGATTTGATCACAGAAGAAAGAAAGGGGTTTATT 94
Query 61 AATTTGGCTACTGCATCCTT-TTC-TTTCACTTTCGGAGAAATTCAATTGGCAATGGCGG 118
||||||| ||||| || ||| || ||| ||||||||| || ||||||||||||||||||
Sbjct 95 AATTTGGTTACTGTAT-CTTACTCTTTTTACTTTCGGATAACTTCAATTGGCAATGGCGG 153
Query 119 GTCGTAAAGAGAAAATGCAACCATTCAGCGGATGTGGAATTGCGATCGCCATCCTGGTTG 178
||||||||||||| | ||||||||| ||| ||||||||||||||||||| |||||||||
Sbjct 154 TTCGTAAAGAGAAAGTCCAACCATTCCGCGAATGTGGAATTGCGATCGCCGTCCTGGTTG 213
Query 179 GAATCATTATCGGGTGCGTCTGCACTGTCTTGTTACCAAATGATTTCTTCAAGTCCGGAT 238
||||| |||||||||||||||||||| | ||| |||| ||||||||| |||| | | |||
Sbjct 214 GAATCTTTATCGGGTGCGTCTGCACTATTTTGATACCCAATGATTTCGTCAACTTCAGAT 273
Query 239 CATTGAAGGTTGCATCGGCTTC------AT-G--TGAACGGGTCAAGATGTTCAAAGCAG 289
||| ||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 274 CATCAAAGGTTGCATCGGCTTCATGTGAATCGCCTGAACGGGTCAAGATGTTCAAAGCAG 333
Query 290 AATTTGCAATCATCTCCGAAAAGAATGCCGAGTTAAGCAAGCAGGTCAGTGAGCTAACAG 349
|||| |||||||||||||||||||||| ||||||||| |||||||||||||| |||||||
Sbjct 334 AATTCGCAATCATCTCCGAAAAGAATGGCGAGTTAAGGAAGCAGGTCAGTGACCTAACAG 393
Query 350 AAAAGGTACGGTTGGCGGAACAAAAA-ACAGAGATCAAGGCCGGGCCTTTTGGCACTCTC 408
|||||||||||||||||||||||||| | || ||||||||| ||||||||||||||| ||
Sbjct 394 AAAAGGTACGGTTGGCGGAACAAAAAGA-AGTGATCAAGGCAGGGCCTTTTGGCACTGTC 452
Query 409 ACGGGTCTGCAAACCAATCCAACTGTGGTTCCCGACGAGTCTGTTAACCCCAGATTAGCT 468
|||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 453 ACGGGTCTGCAAACTAATCCAACTGTGGCTCCCGACGAGTCTGCTAACCCCAGATTAGCT 512
Query 469 AAGCTTTTAGAGAAAGTAGCTGTCAATAAAGAGATCATTGTAGTTCTTGCAAATAACAAT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 AAGCTTTTAGAGAAAGTAGCTGTCAATAAAGAGATCATTGTAGTTCTTGCAAATAACAAT 572
Query 529 GTGAAACCAATGTTGGAGGTGCAGACTGCTAGCGTAAAGAGAGTGGGTATTCAAAACTAC 588
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 573 GTGAAACCAATGTTGGAGGTGCAGATTGCTAGCGTAAAGAGAGTGGGTATTCAAAACTAC 632
Query 589 TTGGTTATCCCATTGGATGATTCCATAGAAAGCTTCTGTAGATCGAATGAAGTCGCATAT 648
||||| |||| |||||||||||| |||||||||| |||| |||||||||||||||||||
Sbjct 633 TTGGTCGTCCCGTTGGATGATTCCTTAGAAAGCTTTTGTAAATCGAATGAAGTCGCATAT 692
Query 649 TTCAAGAGAGATCCAGATAACGCGATAGATGTGGTTGGGAAAAGCGGAAGTG-GTTCAGC 707
| ||||||||||||||||||||||||||||||||||||||||||| |||| | |||| |
Sbjct 693 TACAAGAGAGATCCAGATAACGCGATAGATGTGGTTGGGAAAAGCAGAAG-GAGTTCTGA 751
Query 708 CGTATCTGGACTAAAATTCCGCGTATTAAGGGAGTTCTTGCAGCTTGGTTATGGTGTTCT 767
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 752 TGTATCTGGACTGAAATTCCGCGTCTTAAGGGAGTTCTTGCAGCTTGGTTATGGTGTTCT 811
Query 768 TCTAGCGGATGTGGACCTTGTATTCTTGCAGAACCCTTTTGGTCATCTGTACAGAGACTC 827
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 TCTATCGGATGTGGACATTGTATTCTTGCAGAACCCTTTTGGTCATCTGTACAGAGACTC 871
Query 828 TGATGTGGAGTCCATGAGCGATGGCCATGACAATAACACGGCTTATGGCTTCAACGATGT 887
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 872 TGATGTGGAGTCCATGAGCGATGGTCATGACAATAACACAGCTTATGGCTTCAACGATGT 931
Query 888 GTTTGATGACCCATCCATGACACGGTCTCGGACTGTCTACACAA-CAAGGATATGGGTTT 946
||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 932 GTTTGATGACCCAACCATGACACGGTCTCGGACTGTCTACACAAACA-GGATATGGGTTT 990
Query 947 TTAATTCCGGGTTTTTCTATCTAAGACCAACTCTTCCTTCTATCGAGCTACTAGATCGCG 1006
| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 991 TCAATTCAGGGTTTTTCTATCTAAGACCAACTCTTCCTTCAATCGAGCTACTAGATCGGG 1050
Query 1007 TGACAGATACACTCTCTAAGTCAGGGGGATGGGACCAAGCAGTTTTCAATGAGCACCTCT 1066
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1051 TGACAGATACACTCTCTAAGTCGGGGGGATGGGACCAAGCAGTTTTCAATCAGCACCTCT 1110
Query 1067 TTTACCCTTCACATCCCGGATACATTGGCTTACACGCTTCCAAGCGAGCCATGGATATAT 1126
|||||||||| ||||| ||||||| ||||||| ||||||||||| ||| ||||||| | |
Sbjct 1111 TTTACCCTTCGCATCCTGGATACACTGGCTTATACGCTTCCAAGAGAGTCATGGATGTGT 1170
Query 1127 ACGAGTTCATGAACAGTAGGGTCCTCTTCAAAACGGTGAGAAAGAATGAGGAACTGAAGA 1186
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1171 ACGAGTTCATGAACAGTAGGGTCCTCTTCAAAACGGTGAGAAAGGATGAGGAAATGAAGA 1230
Query 1187 AGTTGAAGCCGGTGATTGTTCACATGAACTACCATTCAGATAAACTCGAAAGAATGCAAG 1246
|| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1231 AGCTGAAGCCGGTGATTATTCATATGAATTACCATTCAGATAAACTCGAAAGAATGCAAG 1290
Query 1247 CTGCAGTGGAGTTCTACGTTAATGGCAAGCAAGATGCGCTTGATAGCTTCTC-TGATGGT 1305
|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 1291 CTGCAGTGGAGTTCTACGTTAATGGCAAGCAAGATGCGCTTGATAGGTTC-CGTGATGGT 1349
Query 1306 TCATAGAGG-GATATATGCTTGTTAAGCAAGATATCGAAAGAACCAAACTTCTTTTTCTT 1364
||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1350 TCATAGAGGAG-TATATGCTTGTTAAGCAAGATATCGAAAGAACCAAACTTCTTCTTCTT 1408
Query 1365 CTGATGTTT 1373
|||||||||
Sbjct 1409 CTGATGTTT 1417
> AT1G75110.1 | Symbols: RRA2 | Nucleotide-diphospho-sugar transferase
family protein | chr1:28194115-28195933 REVERSE LENGTH=1568
Length=1568
Score = 1013 bits (548), Expect = 0.0
Identities = 860/1008 (85%), Gaps = 31/1008 (3%)
Strand=Plus/Plus
Query 377 CAGAGATCAAGGCCGGGCCTTTTGGCACTCTCACGGGTCTGCA-AACCAATCCAACTGTG 435
||||||| ||||| ||||||||||| ||| ||| | ||||| | ||| |||||||||||
Sbjct 398 CAGAGATAAAGGCAGGGCCTTTTGGTACTGTCAAGAGTCTG-AGAACTAATCCAACTGTT 456
Query 436 GTTCCCGACGAGTCTGTTAACCCCAGATTAGCTAAGCTTTTAGAGAAAGTAGCTGTCAAT 495
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 457 GTTCCTGATGAGTCTGTTAACCCGAGATTAGCTAAGCTTTTAGAGAAAGTAGCTGTCAAT 516
Query 496 AAAGAGATCATTGTAGTTCTTGCAAATAACAA-TGTGAAACCAATGTTGGAGGTGCAGAC 554
|||||||||||||| |||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct 517 AAAGAGATCATTGTGGTTCTTGCAAATT-CAAATGTGAAACCAATGTTGGAGTTGCAGAT 575
Query 555 TGCTAGCGTAAAGAGAGTGGGTATTCAAAACTACTTGGTTATCCCATTGGATGATTCCAT 614
|||||| ||||||||||| ||||||||||||||| | || || | ||||||||||||||
Sbjct 576 TGCTAGTGTAAAGAGAGTTGGTATTCAAAACTACCTCATTGTCGCGTTGGATGATTCCAT 635
Query 615 AGAAAGCTTCTGTAGA-TCGAATGAAGTCGCATATTT-CAAGAGAGATCCAGATAACGC- 671
||||| ||||| || ||||| || || | | ||| |||| ||||||||||||| ||
Sbjct 636 GGAAAGTTTCTGC-GAATCGAAGGAGGTTGTGT-TTTACAAGCGAGATCCAGATAAAGCA 693
Query 672 GATAGATGTGGTTGGGAAAAGCGGAAGTGGTTCA-GCCGTATCTGGACTAAAATTCCGCG 730
| | || ||||||| ||||||||| || | || || || || ||||| || |||||||
Sbjct 694 G-TGGACATGGTTGGAAAAAGCGGAGGTAAT-CACGCTGTTTCCGGACTGAAGTTCCGCG 751
Query 731 TATTAAGGGAGTTCTTGCAGCTTGGTTATGGTGTTCTTCTAGCGGATGTGGACCTTGTAT 790
| ||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||| |
Sbjct 752 TCTTAAGAGAGTTCTTGCAGCTTGGTTACAGTGTTCTTCTATCGGATGTGGACATTGTCT 811
Query 791 TCTTGCAGAACCCTTTTGGTCATCTGTACAGAGACTCTGATGTGGAGTCCATGAGCGATG 850
|||||||||| |||||| ||||| | |||||||||||||||| ||||| ||||| ||||
Sbjct 812 TCTTGCAGAATCCTTTTAGTCATTTACACAGAGACTCTGATGTTGAGTCAATGAGTGATG 871
Query 851 GCCATGACAATAACACGGCTTATGGCTTCAACGATGTGTTTGATGACCCATCCATGACAC 910
| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 872 GTCACGACAATAACACGGCTTATGGCTTCAACGATGTGTTTGATGAACCATCAATGGGAT 931
Query 911 GGTCTCGG-ACTGT-CTACACAACAAGGATATGGGTTTTTAATTCCGGGTTTTTCTATCT 968
|| || || | || | |||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 932 GGGCTAGGTA-TGCAC-ACACAATGAGGATATGGGTTTTCAATTCAGGGTTTTTCTATCT 989
Query 969 AAGACCAACTCTTCCTTCTATCGAGCTACTAGATCGCGTGACAGATACACTCTCTAAGTC 1028
|||||||||| ||||||| || || ||||| ||||| ||| |||||||||||||||||||
Sbjct 990 AAGACCAACTATTCCTTCAATAGACCTACTCGATCGTGTGGCAGATACACTCTCTAAGTC 1049
Query 1029 AGGGGGATGGGACCAAGCAGTTTTCAATGAGCACCTCTTTTACCCTTCACATCCCGGATA 1088
|| || |||||||||||| |||||||| ||||| |||||||||||||| ||||| || ||
Sbjct 1050 AGAGGCATGGGACCAAGCGGTTTTCAACGAGCAACTCTTTTACCCTTCGCATCCAGGGTA 1109
Query 1089 CATTGGCTTACACGCTTCCAAGCGAGCCATGGATATATACGAGTTCATGAACAGTAGGGT 1148
|| ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |||
Sbjct 1110 CACTGGCTTACACGCTTCCAAGAGAGTCATGGATATGTACGAGTTCATGAACAGTAAGGT 1169
Query 1149 CCTCTTCAAAACGGTGAGAAAGAATGAGGAACTGAAGAAGTTGAAGCCGGTGATTGTTCA 1208
||||||||||| |||||||||||| | |||||||||||||||||||| |||||||| ||
Sbjct 1170 ACTCTTCAAAACAGTGAGAAAGAATCAAGAACTGAAGAAGTTGAAGCCAGTGATTGTGCA 1229
Query 1209 -CATGAACTACCATTCAGATAAACTCGAAAGAATGCAAGCTGCAGTGGAGTTCTACGTTA 1267
| | || |||||| |||||||||||||| ||||||| |||| || |||||||||||||
Sbjct 1230 TC-TCAATTACCATCCAGATAAACTCGAACGAATGCACGCTGTGGTAGAGTTCTACGTTA 1288
Query 1268 ATGGCAAGCAAGATGCGCTTG-ATAGCTT-CTCTGATGGTTCATA--GAGG---GATAT- 1319
||||||| ||||||||| ||| ||||||| | | ||||||||| | || || ||
Sbjct 1289 ATGGCAAACAAGATGCG-TTGGATAGCTTTCCC-GATGGTTCAGATTGATAAAAGAGATG 1346
Query 1320 -ATGCTTGTTAAGCAAGATATCGAAAGAACCAAA-CTTCTTTTTCTTC 1365
||||||||||||||||||||||||| |||| || | |||| ||||||
Sbjct 1347 GATGCTTGTTAAGCAAGATATCGAAA-AACCCAATCATCTTCTTCTTC 1393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67620134115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5