BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476654
Length=2671
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75150.1 | Symbols: | unknown protein; Has 38228 Blast hits... 3422 0.0
> AT1G75150.1 | Symbols: | unknown protein; Has 38228 Blast hits
to 24529 proteins in 1168 species: Archae - 169; Bacteria
- 4103; Metazoa - 14594; Fungi - 5866; Plants - 1861; Viruses
- 317; Other Eukaryotes - 11318 (source: NCBI BLink). | chr1:28204387-28208573
REVERSE LENGTH=2738
Length=2738
Score = 3422 bits (1853), Expect = 0.0
Identities = 2453/2725 (90%), Gaps = 111/2725 (4%)
Strand=Plus/Plus
Query 23 ATTACAATCGGAGATGATGAACGACGAGCAGCTTTCTCCTATCGGAGAATCGAGTGTCCC 82
|||||||||| ||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 49 ATTACAATCGAAGATGATGAACGATGATCAGCTTTCTCCTATTGGAGAATCGAGTGTCCC 108
Query 83 AGTTCCAAACAGGATGCTTAGGCGATTGAAGAAAGCTAAATCGATCTCCGATTTATGT-C 141
|||||| ||||||||||| || ||||||||||||||||||| ||||||||||| |||| |
Sbjct 109 AGTTCCTAACAGGATGCTAAGACGATTGAAGAAAGCTAAATTGATCTCCGATTCATGTCC 168
Query 142 -----CTG--------GA-T---------CCGACGGCGATGATCTGGGTAAGTCTGAATT 178
||| || | |||||||||| ||||||||||||||||||||
Sbjct 169 TGGATCTGAAACCTTCGATTCCGAAAACCCCGACGGCGAGGATCTGGGTAAGTCTGAATT 228
Query 179 GCAGTCTGCGAAGGGTTTCGATGGGTTTGAGGAAGAAGACGGCGTTCGATCTGATCTCGA 238
||||||||||||||||| ||||||| ||||||||||||| || |||| ||||||||||||
Sbjct 229 GCAGTCTGCGAAGGGTTGCGATGGGATTGAGGAAGAAGATGGGGTTCCATCTGATCTCGA 288
Query 239 GGGTTTGGGTGTGGAGGATGAAGTTACCGCAAAAAAGGTTA-TTGATTTTGATTCTGTGC 297
||||||||||| ||||||| ||||||||| | ||||| | |||||||||||| |||||
Sbjct 289 CGGTTTGGGTGTAGAGGATGGAGTTACCGCGAGGAAGGT-ACTTGATTTTGATTATGTGC 347
Query 298 CTGAGTTTAATCAGACTCTTGAAGATCTGGGCGATAAAGGTGAAGAAGACGAAATCTCTG 357
|||||||||||||||| | |||||||||||||| ||| ||| |||| |||||||||||
Sbjct 348 CTGAGTTTAATCAGACGATCGAAGATCTGGGCGAGAAAAGTG--GAAG-CGAAATCTCTG 404
Query 358 ATTCGGAAACTAGAGATGAAATTAGGGCTGT-TGAAACAACGGAAGCTGGAAAGGAGCGG 416
|||||||||| |||||||||||||||| | | |||||| |||||| ||| ||||||| |
Sbjct 405 ATTCGGAAACAAGAGATGAAATTAGGGTT-TCTGAAACGACGGAATCTGAAAAGGAG-GA 462
Query 417 -CCA-ATT---A-ATG-C-GCCC--GAGTTTGATGG---AATCTGTG-ATTTGGAT-ACA 461
|| ||| | | | | | | || |||||| ||| | | | |||| | | |
Sbjct 463 TCCGGATTTCGAGACGACTGTGCATGAATTTGATTCCCCAATG-GAGGAATTGGGTGAGA 521
Query 462 --G---AAGA--A-GA--AA-TTAGGGTTTCGGAAACAACGAAGGAAGCTGGAAAGAAGC 510
| |||| | || || |||||||| ||||||| ||||||||||||||||||||
Sbjct 522 AAGGTGAAGACGAAGAGGAAATTAGGGTTCCGGAAAC---GAAGGAAGCTGGAAAGAAGC 578
Query 511 GATCGATTCCggagacaagtgatggagaggggaaggagagaaagagagataagaagagga 570
|| | ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 579 GACCAATTGTGGAGACACGTGATGGAGAGGGAAAGGAGAGAAAGAGAGATAAGAAGAGGA 638
Query 571 acaagaagagTGACGATTTTGATGAACTACCAGTCTCTACTGCCTCCATGAACATGACTA 630
| ||||||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct 639 AGAAGAAGAGTGATGACTTTGATGAGCTGCCAGTCTCTACTGCTTCCATGAACATGACTA 698
Query 631 AGAAGGAAAGAAGGGAATATCTTGATCAGCTTCGTGCAGAAAATCAGAGGCTCTTGCGAG 690
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 699 AGAAGGAAAGAAGGGAATATCTTGATCAGCTTCGTGCAGAAAACCAGAGACTCTTGCGAG 758
Query 691 AAACTAGAGATGCTGCCTTTGAACCCGCCCCTCTTGTCCGAAAGCCGATTTCATCTGTCT 750
|||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 759 AAACGAGAGATGCTGCCTTTGAAGCAGCCCCTCTTGTCCGAAAGCCGATTTCATCTGTCT 818
Query 751 TGGCGAAAATTCGAAGAAGAAAAGAGGAGATTTCAAAACAATTCCTTAGCAGGAAGAAAT 810
||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 819 TGGAGAAAATTCGCAGAAGAAAAGAAGAGATTTCAAAACAATTCCTTAGTAGGAAGAAGT 878
Query 811 CCAAATCTATTGATATATGCGAC-GAGGATGATTTTGAGGAAGTTGTAGCTGAAGAGAAG 869
||||||||||||| ||||||||| | |||||||||||| || |||||||||||||||| |
Sbjct 879 CCAAATCTATTGACATATGCGACCG-GGATGATTTTGAAGATGTTGTAGCTGAAGAGATG 937
Query 870 AATGAAGAAA-G--T--A-CAAGCAAGCAAAGC-CATGGAGGACAGCATTGCTCGGAGGA 922
|||||||| | | | | |||||||||||| | || |||||||||||||||||||||
Sbjct 938 AATGAAGATATGAATTTAACAAGCAAGCAAAATTC-TGCAGGACAGCATTGCTCGGAGGA 996
Query 923 CTCTGCAGGTCCATTGGAGAACTCAGGCAGTCCCTCTTACAAA-A-AAGCTGAAAGTAGC 980
|||||||||||| | ||||||||||| |||||||||| | ||| | |||||||||||| |
Sbjct 997 CTCTGCAGGTCCGTCGGAGAACTCAGACAGTCCCTCT-A-AAAGAGAAGCTGAAAGTAAC 1054
Query 981 CCTACTCATCAGGATCCATCCCTGCGTCCACAAACGATTAACTCTGGAGATGAACTTCTA 1040
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1055 CCTACTCATCAGGATCCATCCGTGTGTCCACAAACGATTAACTCTGGAGATGAACTTCTT 1114
Query 1041 GAGAAGACGTCAAGCAGATCTTTGGAAGAAGTAATGACACCGTCAGTAGTTGCCATGAAC 1100
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1115 GAGAAGATGTCAAGCAGATCTTTGGAAGAAGTAATGACACCGTCGGTAGTTGCCATGAAC 1174
Query 1101 CTCAAACTTAACCTGTCTCCTGTGCCTGATAAATCTTCTGAAGAAACAGAGTACAGAAAG 1160
|||||||| |||||||||||||||||||| |||||||| |||||| ||||||||| ||||
Sbjct 1175 CTCAAACTAAACCTGTCTCCTGTGCCTGACAAATCTTCCGAAGAAGCAGAGTACATAAAG 1234
Query 1161 GAAAATTCTGATCCTGAGACCCATGATTCATCCCCTGGCGACCCTGTTAGAAAATTTATT 1220
| |||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 1235 GGAAATTCTGATCCGGAGATCCATGATTC-TCC--TGGCGACCCTGTTAGAAAATTTATT 1291
Query 1221 GATGAGGATGCTGAAGAGGAAGATGACAGCGACAATGATCTACTCCGATTTGAGGATGAG 1280
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1292 GATGAGGATGCTGAAGAGGAAGATGACAGTGACAATGATTTACTCCGATTTGAGGATGAG 1351
Query 1281 GATGATGACGAAGATGAAGAAGATGATGATCTCAGGGATATGATTGTCAGTCAATTTAAG 1340
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GATGATGACGAAGATGAAGACGATGATGATCTCAGGGATATGATTGTCAGTCAATTTAAG 1411
Query 1341 GAAGATCCAACTGATAAAGATAGACGTAATGAACTGCATCAGAAGTGGCTCGAACAACAA 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1412 GAAGATCCAACTGATAAAGATAGACGTAATGAACTGCATCAGAAGTGGCTCGAGCAACAA 1471
Query 1401 GATGCTGCAGGGACAGAGAAACTCTTACAGAAGCTTAAACGTGGTTTGCAGCATGATGAA 1460
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1472 GATGCTGCAGGGACAGAGAAACTCTTACAGAAGCTTAAACGTGGTGTGCAGCATGATGAA 1531
Query 1461 ACATTATTGTctgaagatgaagatgaaaatgacgatgctgatgatgaagagagagc-tga 1519
|||||||||||||||||||||||||| ||| |||| ||||||||||||||| || |||
Sbjct 1532 ACATTATTGTCTGAAGATGAAGATGACGATGTTGATGATGATGATGAAGAGAG-GCCTGA 1590
Query 1520 agatgctgatgatgaagaagTGCAAAAACCTGAAGCCAGTGAAGA--A-G--GA-GATGA 1573
|| |||||||| |||||||||||||||||||||||||| |||||| | | || |||||
Sbjct 1591 AGGTGCTGATGGTGAAGAAGTGCAAAAACCTGAAGCCAATGAAGATGAAGATGAAGATGA 1650
Query 1574 AGATGAAGAAGATCCAAGTCATGCAAATTCCATGCGAATGACCATAAAGAAAATTAAGGA 1633
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1651 AGATGAAGAAGATCCAAGTCATGCAAATTCCATGCGAATGACCATAAAGAAAATAAAGGA 1710
Query 1634 AATGATCCCTTTAATGTTCACAGATGAAGATGATGTTTATGTGTCATCTGACGACGAGGA 1693
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1711 AATGATCCCTTTAATGTTCACAGATGAAGATGATGTTTATGTGTCATCAGACGATGAGGA 1770
Query 1694 AATGGAAAAGAAGCTTATGCAACAGCGATTGTACAAGAAAATGGAGCTAAAGGCCAAGTC 1753
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1771 AATGGAAAAGAAGCTTCTGCAACAGCGACTGTACAAGAAAATGGAGCTAAAGGCCAAGTC 1830
Query 1754 TTCGTCATCCACTGGGGATGAAAACTCTGAGGAAATTCTTCGCCACATCAAGAAGCCTGA 1813
||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1831 TTCATCATCCACTGCGGATGAAAACTCTGAAGAAATTCTTCGCCACATCAAGAAGCCTGA 1890
Query 1814 GATCAAGAAGAAGGCAAAACCTTCTTCTTTTAAAGAGAGGGCACTCATGGAAATAAACAA 1873
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891 GATCAAGAAGAAAGCAAAACCTTCTTCTTTTAAAGAGAGGGCACTCATGGAAATAAACAA 1950
Query 1874 AAACCCTGCGGCATCCAAGTCATCGTTCTTGGGTAGACTTACAAAGAGTTCCATGCCAGA 1933
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1951 AAACCCTGCAGCATCCAAGTCATCGTTCTTGGGTAGACTTACAAAGAGTTCCATATCAGA 2010
Query 1934 CGGATCTCGCAAGCGCGGTTCAAACGTTGTACGTGGCTATATATTCGAACGTGATGACAG 1993
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2011 AGGATCTCGCAAGCGCGGTTCAAATGTTGTACGTGGCTATATATTCGAACGCGATGACAG 2070
Query 1994 TAACAGCAAAAGCTCAAACACAGTGCCAGAGGAACCTTCAGCTCCAGAGACGATTATTAA 2053
|||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| |
Sbjct 2071 TAACAGCAAAAGCTCAAATTCAGTGGCAGAGGAACCTTCAGTTCCAGAGACGATTATTCA 2130
Query 2054 AGAAAAAAGCCGACCAAAAAGAGCTCCGGCAAAATTCACTGCCTCACAGTCACAAGAGAG 2113
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2131 AGAAAAAAGCCGACCAAAAAGAGCTCCAGCAAAATTCACTGCCTCACAGTCACAAGAGAG 2190
Query 2114 ATCAGCAACATTACAGGCGACAGCAGTGGAG--G-AGACGAGCACGAGGCAACGAACGAC 2170
|||| |||||||||||||||| | |||||| | |||||||||||||||||||| | ||
Sbjct 2191 ATCAACAACATTACAGGCGACGGTGGTGGAGAAGGAGACGAGCACGAGGCAACGATCAAC 2250
Query 2171 CTTGTACGAGATTCTAAAGATGTCATCAAAGAAAACTTGCTTCAATTCACGGGAGACAAT 2230
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 2251 CTTGTACGAGATTCTAAAGATGTCATCAAAGAAAACTTCCTTCAATTCACGCGAGACAAT 2310
Query 2231 GATAAGCAGCAACCACACCGAGTCTATATTTGCTGCTTTCAAACTGGATAAGAAACCAGT 2290
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2311 GATAAGCAGCAACCACACTGAGTCTATATTTGCTGCTTTCAAACTGGATAAGAAACCAGT 2370
Query 2291 TAAGACGAATCCACAATTGCAAAGAAACAGCACGTGTGGTGAATGAACGTGAATCACTGG 2350
|||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 2371 TAAGACAAATCCACAATTGCAATGCAACGGCACGTGTGGTGAATGAACGTGAATCACTGG 2430
Query 2351 ATCGTGTCACTTTTTGCTAATGA-GTGGCCACCAAAACGGCGTAGGACCGCGCGTTTTGG 2409
|||||| | ||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2431 ATCGTGACCCTTTTTGTTAAC-ATGTGGCCACCAAAACGGCGTAGGACCGCGCGTTTTGG 2489
Query 2410 CATCT-TGCTGATCAGATTCTTCACTCTTTCCGATTCTCAAGTACATAGGTTGGTTGCTG 2468
| | | | ||||||||| || || ||| | ||||||||||||||||||||||||||||
Sbjct 2490 CCTTTAT-CTGATCAGA--CT-CAGTCT--C-GATTCTCAAGTACATAGGTTGGTTGCTG 2542
Query 2469 TAACTACAGAGACTTTAGTGGGAGATTGAGATTAGATCGTCCGTCGTAGTCATCCGAATC 2528
|||||||||||||||||| | ||| || |||||||||||||| ||||||| ||||||
Sbjct 2543 TAACTACAGAGACTTTAGCG--AGA--GA--TTAGATCGTCCGTCTTAGTCATTCGAATC 2596
Query 2529 TTTTCTTAGACATTGAGATCAGAATTAT-TATCCAAAGTTTTGTTTTATACATTGAATGT 2587
|||||||||| ||||||||||||||| | ||| ||||||||||||||||| ||| |||||
Sbjct 2597 TTTTCTTAGAGATTGAGATCAGAATTTTCTATTCAAAGTTTTGTTTTATATATTCAATGT 2656
Query 2588 TTTATAGTATACTATTTCTTTTCTAATGGATAGAATT-TATTCAAGAATCATTCAACTAA 2646
| | | |||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 2657 CT-ACACTATACTATTTCTTTA-TAATGGATAGGATTCTATTCAAGAATCATTCAACTAA 2714
Query 2647 ACATCCATTAACGCAAACAGTTTTT 2671
|||||||||| |||||||||||||
Sbjct 2715 -CATCCATTAAAGCAAACAGTTTTT 2738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132641397292
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5