BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476660
Length=1670
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75180.1 | Symbols: | Erythronate-4-phosphate dehydrogenase... 1923 0.0
AT1G19400.1 | Symbols: | Erythronate-4-phosphate dehydrogenase... 686 0.0
AT5G04790.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 191 2e-47
> AT1G75180.1 | Symbols: | Erythronate-4-phosphate dehydrogenase
family protein | chr1:28215836-28218330 REVERSE LENGTH=1543
Length=1543
Score = 1923 bits (1041), Expect = 0.0
Identities = 1213/1290 (94%), Gaps = 35/1290 (3%)
Strand=Plus/Plus
Query 407 ATATGTTTTGGATTCAGTGAGAAATAGAAATTGATTTTGG-TTTC-TTAATCATGGTGGA 464
|||||||||||||||||||||||| ||| ||||||||||| |||| ||||||||||||||
Sbjct 230 ATATGTTTTGGATTCAGTGAGAAACAGAGATTGATTTTGGTTTTCTTTAATCATGGTGGA 289
Query 465 GCCTTATGAGACACGTAACAACGGTGAAGCTTCCCAGATGATCAGATATCAGAGTTATAA 524
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 290 GCCTTATGAGACACGTAACAACGGTGAAGCATCCCAGATGATCAGATATCAGAGTTATAA 349
Query 525 CCATCACAATTCCAGATTACCATCACCATTATCATCGCCATTACTTGATTTGAGAGTGTT 584
|||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||
Sbjct 350 CCATCACAATTCCAGACTACCATCTTCATTATCATCGCCATTGCTTGATTTGAGAGTGTT 409
Query 585 CTATGTCAGAATCAGCAATTTCAAGGTGGATCATTCGACACCTGAGGTCCTCACCATTAC 644
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 410 CTATGTCAGAATCAGTAATTTCAAGGTGGATCATTCGACACCTGAGGTTCTCACCATTAC 469
Query 645 TCATATTCCTTTGGATCCAGATTCACTTCTGGAGATAAATGGTGTTAGAATGAGCATGTA 704
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 470 TCATATTCCTTTGGATCCAGATTCACTTCTGGAGATTAATGGTGTTAGAATGAGCATGTA 529
Query 705 CTCTGAAGGAGTTTCTTCTCAGCTAAGGCGAGATCGTGTTGATAAGAAATCCGAAGTAGC 764
|||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 530 CTCTGAAGGAGTTTCTTCTCAGCTTAGGCGTGATCGTGTTGATAAGAAATCTGAAGTTGC 589
Query 765 TACTTTTATCAGCACAGACAATATCAGGTTATCTGGTAGCGTGAAGTTTGAGGTTTATGA 824
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 590 TACTTTTATCAGCACGGATAATATCAGGTTATCTGGTAGTGTGAAGTTTGAGGTTTATGA 649
Query 825 CAAAGATGAGCTGGTTTTGTCTGGAACTCTTGAGATGTCTGGTAGTAATGGTTTCACTGG 884
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 650 TAAAGATGAGCTGGTTTTGTCTGGAACGCTTGAGATGTCTGGTAGTAATGGTTTCACTGG 709
Query 885 TGAATCTAAGCATAGCGTGAAGCGGTGGAACATGAATTGTGAAGCTGAGATCACTGCAGG 944
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TGAATCTAAGCATAGCGTGAAGCGGTGGAACATGAATTGTGAAGCTGAGATCACTGCAGA 769
Query 945 GTCTGGTTTCTTGAAGGAGAAACATATTGGTGGTTCGGAGTTATCATCTCCATTGCCAAC 1004
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 770 GTCTGGTTTCTTGAAGGAGAAACATATTGGTGGTTCGGAGTTATCTTCTCCATTGCCAAC 829
Query 1005 TATTGAAGTCTATGTCACTGGCTGCTTTTCAGGAACTCCCATCATCTTAACCAAGACTCT 1064
|||||||||||||||||||||||||||||| |||||||| |||||| |||| ||||||||
Sbjct 830 TATTGAAGTCTATGTCACTGGCTGCTTTTCTGGAACTCCTATCATCCTAACGAAGACTCT 889
Query 1065 TCAGCTTGGTTTCAGAAAGAAGCACGGTAGAGTGGCTGCATTAGATTCGATTCCGGAGTA 1124
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 890 ACAGCTTGGTTTCAGAAAGAAGCACGGTAGAGTGACTGCATTAGATTCGATTCCCGAGTA 949
Query 1125 TGAAGCTGATGAGCCTCATAAAGGAAACTCATCTGAGCTTGATTATCAGGTAACAGAATA 1184
|||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 950 TGAAACTGATGAGCCTCATAAAGGAAACTCATCTGAGCTTGATTATCAGGTTACTGAATA 1009
Query 1185 TGGAAGTTATAAACAAGAATATGAAGGAGAACACAGCGACATGTATTGGAATAGAGAGTA 1244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1010 TGGAAGTTATAAACAAGAATATGAAGGAGAACACAGCGACATGTACTGGAATAGAGAGTA 1069
Query 1245 CGCAGATGGTGAAGATGGTGAGATGTCGTGGTTCAACGCCGGTGTGAGGGTTGGTGTGGG 1304
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1070 CGCAGATGGTGAAGATGGTGAGATGTCGTGGTTCAACGCTGGTGTGAGGGTTGGTGTGGG 1129
Query 1305 AATTGGTCTTGGTGTCTGTGTAGGTCTTGGCATTGGGGTTGGCCTTCTAGTGCGTACCTA 1364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1130 AATTGGTCTTGGTGTCTGTGTAGGTCTTGGCATTGGGGTTGGCCTTCTGGTGCGTACCTA 1189
Query 1365 TCAATCAACCACCAGAAACTTCAGAAGGAGGATTATCTAGTTTCAT-CTAAATTGCCTCA 1423
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1190 TCAATCGACCACCAGAAACTTCAGAAGGAGGATTATCTAGTTTCATTC-AAATTGCCTCA 1248
Query 1424 AGCTTCTTCTActctctctctctctcCCACTAACTCCAATCCGTTGCACATCACTTTTGA 1483
|||||| ||||||||||| | |||| | | |||||||||||||||||||||||||||
Sbjct 1249 AGCTTCATCTACTCTCTC-C-CTCT---A--A-CTCCAATCCGTTGCACATCACTTTTGA 1300
Query 1484 CTGCAGAACTCTAAGCTATATAGTCTAAGCTAATACTGCTGTGTAGTATAATTTTT---- 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 CTGCAGAACTCTAAGCTATATAGTCTAAGCTAATACTGCTGTGTAGTATAATTTTTGTTT 1360
Query 1540 ------CTTTT----CTCTTTGTGCCTTCAAATTTTGAAAGAAATCATTCTCCCTTCTT- 1588
||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1361 TATGTACTTTTTAATCTCTTTGTGCCTTCAAATTTTGAAAGAAATCATTTTCCCTTCTTC 1420
Query 1589 --GTGTTTGTTGAGATTCAGACTGAAAGAAAGAAAGCTTGTTG-----A-TGCGAATCTT 1640
||||||| ||||||||||| ||||||||| ||||||||||| | ||||||||||
Sbjct 1421 TTGTGTTTGGTGAGATTCAGATTGAAAGAAACAAAGCTTGTTGCTGGTAATGCGAATCTT 1480
Query 1641 ATTGTCTGCTTCCTGTAAATAAAATGCTTA 1670
|| ||||||||||||||||||||||||||
Sbjct 1481 GTTTTCTGCTTCCTGTAAATAAAATGCTTA 1510
> AT1G19400.1 | Symbols: | Erythronate-4-phosphate dehydrogenase
family protein | chr1:6712038-6714247 REVERSE LENGTH=1667
Length=1667
Score = 686 bits (371), Expect = 0.0
Identities = 783/971 (81%), Gaps = 72/971 (7%)
Strand=Plus/Plus
Query 455 TCATGGTGGAGCCTTATGAGACACGTAACAACGGTGAAGCTTCCCAGATGATC-AGATAT 513
|||||| |||||||| |||||||| | ||| |||||||| | || || ||| ||||||
Sbjct 570 TCATGGAGGAGCCTTGTGAGACACTTGACAGTGGTGAAGCCTATCAAAT-ATCTAGATAT 628
Query 514 CAGAGTTATAACCATCACAATTCCAGATTACCATCACCATTATCATCGCCATTACTT-GA 572
|| | |||||||| |||| |||||| | | | | ||| || || | || ||
Sbjct 629 CATAACTATAACCAACACAGCTCCAGA--AGC-T---C---ATC-TC-CC--TGGTTGGA 675
Query 573 TTTGAGAGTGTTCTATGTCAGAATCAGCAATTTCAAGGTGGATCATTCGACACCTGAGGT 632
||||||||||||||||||| | || ||||||||| |||||| |||| || ||||||||
Sbjct 676 TTTGAGAGTGTTCTATGTCCGGATAAGCAATTTCGTGGTGGAAGATTCAACTCCTGAGGT 735
Query 633 CCTCACCATTACTCATATTCCTTTGGATCCAGATTCACTTCTGGAGATAAATGGTGTTAG 692
|||||| || | ||| |||||| ||||||||||| | ||| ||||||| || ||||||||
Sbjct 736 CCTCACTATCAATCACATTCCTCTGGATCCAGATACGCTTTTGGAGATTAACGGTGTTAG 795
Query 693 AATGAGCATGTACTCTGAAGGAGTTTCTTCTCAGCTAAGGCGAGATCGTGTTGATAAGAA 752
|||| | |||||||| ||||||| |||||| ||||| ||| ||||||| |||||||||||
Sbjct 796 AATGGGAATGTACTCAGAAGGAGGTTCTTCACAGCTTAGGAGAGATCGGGTTGATAAGAA 855
Query 753 ATCCGAAGTAGCTACTTTTATCAGCACAGACAATATCAGGTTATCTGGTAGCGTGAAGTT 812
||| |||| |||||||| | ||||||||||||||||||||||| ||||||| ||||||||
Sbjct 856 ATCTGAAGAAGCTACTTATGTCAGCACAGACAATATCAGGTTAACTGGTAGTGTGAAGTT 915
Query 813 TGAGGTTTATGACAAAGATGAGCTGGTTTTGTCTGGAACTCTTGAGATGTCTGGTAGTAA 872
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 916 TGAGGTTTATGACAAAAATGAGCTAGTTTTGTCTGGAACTCTTGAGATGTCTGGTAGTAA 975
Query 873 TGGTTTCACTGGTGAATCTAAGCATAGCGTGAAGCGGTGGAACATGAATTGTGAAGCTGA 932
|||||||||||| ||||| ||| || || | ||||| ||||||||||| |||||
Sbjct 976 TGGTTTCACTGGGGAATCAAAGAAT--CG--A-----TGGAAAATGAATTGTGAGGCTGA 1026
Query 933 GATCACTGCAGGGTCTGGTTTC-TTGAAGGAGAA-A-CATATTGGTGGTTCG-GAGTTAT 988
| |||||||||||||||||||| || |||||||| | |||| | | | | |||||||
Sbjct 1027 GGTCACTGCAGGGTCTGGTTTCCTT-AAGGAGAAGAGCATAAACG-G-T-CAAGAGTTAT 1082
Query 989 CATCTCCATTGCCAACTATTGAAGTCTATGTCACTGGCTGCTTTTCAGGAACTCCCATCA 1048
| ||||||||||||||||| || |||||||| ||||| ||||| |||||||| |||||||
Sbjct 1083 CGTCTCCATTGCCAACTATCGAGGTCTATGTTACTGGTTGCTTCTCAGGAACACCCATCA 1142
Query 1049 TCTTAACCAAGACTCTTCAGCTTGGTTTCAGAAAGAAGCACG-GTAGAGTGGCTG-CATT 1106
|||||||||||||||| || |||||||| | ||||||||| | ||||| | || ||||
Sbjct 1143 TCTTAACCAAGACTCTGCAACTTGGTTTGAAAAAGAAGCA-GAGTAGAA-GAATGGCATT 1200
Query 1107 AGATTCGATTCCGGAGTATGAAGCTG-ATGAGCCTCATAAAGGAAAC-TCATCTG-AGCT 1163
||| | ||||| ||||||||| ||| | |||||||| |||| | || || | || | ||
Sbjct 1201 GGATGCAATTCCTGAGTATGAAACTGCA-GAGCCTCAGAAAG-ACACCTCCTATGCA-CT 1257
Query 1164 TGAT-TATCAGGTAACAG-A-A-TATGG-AAGTTATAAACAAGAATATGAAGGAGAACAC 1218
|||| | ||||| |||| | | || || || ||| ||| | ||||| |||||||| ||
Sbjct 1258 TGATCT-TCAGGCAACAACAGAGTACGGGAA-TTACAAAGAGGAATACGAAGGAGA-CA- 1313
Query 1219 AGCGACATGTATTGGA-ATAGAGAGTACGCAGATGGTGAAGATGGTGAGATGTCGTGGTT 1277
||||||||| | || |||| ||| | ||| | || |||||||| |||||
Sbjct 1314 -------TGTATTGGAGA-AGTGAGT--GCA--T--TGATG--GG-GAGATGTCATGGTT 1356
Query 1278 CAACGCCGGTGTGAGGGTTGGTGT-GGGAATTGGTCTTGGTGTCTGTGTAGGTCTTGGCA 1336
|| || ||||| ||||||||||| |||| | || |||||||||||||| |||||||| |
Sbjct 1357 TAATGCAGGTGTAAGGGTTGGTGTTGGGA-TAGGACTTGGTGTCTGTGTTGGTCTTGGGA 1415
Query 1337 TTGGGGTTGGCCTTCTAGTGCGTACCTATCAATCAACCACCAGAAACTTCAGAAGGAGGA 1396
|||| || || ||||| || ||||| ||||||||||| ||||||| |||||| ||||||
Sbjct 1416 TTGGTGTCGGTCTTCTCGTTCGTACTTATCAATCAACTACCAGAACCTTCAGGAGGAGGC 1475
Query 1397 TTATCTAGTTT 1407
|| ||||||||
Sbjct 1476 TTCTCTAGTTT 1486
> AT5G04790.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:1388155-1388319
REVERSE LENGTH=165
Length=165
Score = 191 bits (103), Expect = 2e-47
Identities = 138/153 (90%), Gaps = 9/153 (6%)
Strand=Plus/Plus
Query 1296 TGGTGTGGGAATTGGTCTTGGTGTCTGTGTAGG-TCTTGGCATTGGGGTTGGCCTTCTAG 1354
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| || |
Sbjct 18 TGGTGTGGGAATTGGTCTTGGTGTCTGTGTAGGTTTTTGGCATTGGGGTTGGCCTGCTGG 77
Query 1355 TGCGTACCTATCAATCAACCACCAGAAACTTCAGAAGGAGGATTATCTAGTTTCAT-CTA 1413
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 78 TTCGCACCTATCAATCAACCACCAGAAACTTCAGAAGGAGGATTATCTAGTTTCATTC-A 136
Query 1414 AATTGCCTCAAGCTTCTTCTActctctctctct 1446
|||||||| | || || || ||||||| ||||
Sbjct 137 AATTGCCT-A--CT-CT-CT-CTCTCTCCCTCT 163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82529695980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5