BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476662
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75190.1 | Symbols: | unknown protein; Has 7306 Blast hits ... 878 0.0
> AT1G75190.1 | Symbols: | unknown protein; Has 7306 Blast hits
to 3858 proteins in 279 species: Archae - 15; Bacteria - 134;
Metazoa - 3314; Fungi - 546; Plants - 228; Viruses - 207;
Other Eukaryotes - 2862 (source: NCBI BLink). | chr1:28219382-28220227
FORWARD LENGTH=846
Length=846
Score = 878 bits (475), Expect = 0.0
Identities = 617/679 (91%), Gaps = 36/679 (5%)
Strand=Plus/Plus
Query 1 TTTGTTTCTGTCTGTAAAACACAAAAGAAAA-TTTATTGCTCTTGAAGATATTAAAAATC 59
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 109 TTTGTTTCTGTCTGTAAAACATAAAAGAAAATTTTATTGCTCTTGAAGATATTAAAAATC 168
Query 60 AGACAAGCTAAGCTGTTCAAGAAAAATATTACTCTGTTGAGA-AAAGTAAAACTGATGGG 118
|| | | |||||||||||||||||||||| |||||||| | ||||| |||||||||||
Sbjct 169 AG---A-C-AAGCTGTTCAAGAAAAATATTATTCTGTTGA-ATAAAGT-AAACTGATGGG 221
Query 119 AAAGAGAAGGTTTCAGAAAGCAAAGG-AAC--CGTCAGTTGCAGAAGTTTCATCTCCGAC 175
||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||||||
Sbjct 222 GAAGAGAAGGTTTCAGAAAGCAAAGGAAACGTCGTCAGTAGCAGAAGCTTCATCTCCGAC 281
Query 176 GGAGTCTCAGACTACaaggagacgaagaggaaggccaaggaagaatcttgagaatccaga 235
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 282 GGAGTCTCAGGCTACAAGGAGACGAAGAGGAAGGCCAAGGAAGAATCTTGAGAACCCAGA 341
Query 236 agatttcaagaaggaagaatctgaagaagacgaggattacgaagagtacgaggacgaaga 295
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 342 AGATTTCAAGAAGGAAGAATCTGAGGAAGACGAGGATTACGAAGAGTACGAGGACGAAGA 401
Query 296 agaagaagacgaagaagctgaggt--t-attaacagagagaagcagaagaagaaagTTAG 352
|||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 402 AGAAGAAGACGAAGAAGCTGAGGTGGTTATTAACAGAGAGAAGCTGAAGAAGAAAGTTAG 461
Query 353 GAGTAGTAGT---AGTATGGAAGAGGAGCAAAAGATGAAGCATGAAGAGTTAGAGGAGGA 409
||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 462 GAGCAGTAGTGGTAGTATGGAAAAGGAGCAAAAGATGAAACATGAAGAGTTAGAGGAGGA 521
Query 410 GGAGGAGAAGCCGGAGATGAAGATGAAGGTGGTGGTTCCACCGCCCTCGTCCAGACGGTC 469
|||| | | ||||||||||| | | ||||| |||||||||||||| ||||| ||||||||
Sbjct 522 GGAG-A-A-GCCGGAGATGACGGTCAAGGTAGTGGTTCCACCGCCGTCGTCTAGACGGTC 578
Query 470 GAGGAGGAAAAGCACGCCGGTGAAGAGCTGGTAAATCTTTA-TTACCGTATCATCAAT-- 526
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||
Sbjct 579 GAGGAGGAAAAGCACGCCGGTGAAGAGCTGGTAAA-CTTTAATTACCGTATCATTAATTA 637
Query 527 --GGAGTTCTTGTGTTTGTGTGTGTTTTTGGATT-AACTATTGTTGGATTATAAATTAAT 583
|||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 638 ATGGAGTTTTTGTTTTTGTGTGTGTTTTTGGATTTAACTATTGTTGGATTATAAATTAAT 697
Query 584 TGAAAC-CATCATGGGAAGAAAAAACAATTGATTTTATAATTTCTTGGATCTGTTAGTTC 642
|||||| | |||||||||||||||| || ||| || ||| | |||| |||||||||
Sbjct 698 TGAAACTC-TCATGGGAAGAAAAAAAAACA-ATTG-AT--TTT-T-GGATTTGTTAGTTC 750
Query 643 AAAACAAGAAACAAATCTT 661
|||||||||||||||||||
Sbjct 751 AAAACAAGAAACAAATCTT 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33355473608
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5