BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476667
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75230.2 | Symbols: | DNA glycosylase superfamily protein |... 1764 0.0
> AT1G75230.2 | Symbols: | DNA glycosylase superfamily protein
| chr1:28234349-28235784 FORWARD LENGTH=1436
Length=1436
Score = 1764 bits (955), Expect = 0.0
Identities = 1171/1270 (92%), Gaps = 35/1270 (3%)
Strand=Plus/Plus
Query 1 GGCTTATTCTCCGATTAGGTCTTTGATTCTCTTCGTCTTCGTCTTCGTCTCTGAAGCGAC 60
|||| |||||||||||||| || ||| ||| |||||||||||||||||||||||||
Sbjct 1 GGCTAATTCTCCGATTAGG---TT--TTCGATTC-TCTTCGTCTTCGTCTCTGAAGCGAC 54
Query 61 CAAAAACCCTAATTTTACCAATCCGAAAT-TCCGATTTCACATGGGTGAACATTCACCTT 119
|||||||||||||| || |||| |||||| | | ||||||||||||||||||||||||||
Sbjct 55 CAAAAACCCTAATTCTATCAATTCGAAATCTTCAATTTCACATGGGTGAACATTCACCTT 114
Query 120 CTCAACCATCGTCTCAAACTCATCC-CCAAAATCAACCAGAATCACCCAATCCCGAAACC 178
|||||||||| ||||| |||| ||| || ||| ||||| ||||||||||||| |||||||
Sbjct 115 CTCAACCATCATCTCATACTCTTCCTCC-AAACCAACCGGAATCACCCAATCACGAAACC 173
Query 179 CCTAATCCAATTCCACCGGAAACTAACGATGATGACTCCGCCTCATCCGCCGGAGTTTCT 238
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 174 CCTAATCCAATTCCACCGGAAACCAACGATGACGACTCCGCCTCATCCGCCGGAGTTTCT 233
Query 239 GGCTCAATCGTCTCATTAACCACCATTGAAGCACCACGAGTCACTGAATTAGGCAATGTA 298
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 234 GGCTCAATCGTCTCATCAACCACCATTGAAGCACCACAAGTCACTGAATTAGGCAATGTA 293
Query 299 TCGTCTCCACCTTCCAAAATCCCACTCCGTCCTCGAAAAATCCGGAAACTTTCACCCGAC 358
|||||||||||| |||| ||||| |||||||||||||||||| | |||||||||||||||
Sbjct 294 TCGTCTCCACCTACCAAGATCCCTCTCCGTCCTCGAAAAATCAGAAAACTTTCACCCGAC 353
Query 359 GATGACGCTTCCGGTAACGGCGACGGATTCAATCCGGAGCATAACCTTT-T--GGCGACG 415
|| ||||| | | | ||||||||||||||||||||||||||||| | | ||||
Sbjct 354 GACGACGC-T----T--C--CGACGGATTCAATCCGGAGCATAACCTTTCTCAGATGACG 404
Query 416 ACTTCAAAACCGGCAGTGAAGAGTAAATTGTCACAGTCACGCTCTGTAACCGTGCCGAGA 475
|| | ||||||||| |||||||||||| |||||||||||| |||||||||||||||||
Sbjct 405 ACGACGAAACCGGCAACGAAGAGTAAATTATCACAGTCACGCACTGTAACCGTGCCGAGA 464
Query 476 ATCCACGCGAGGTCTCTAACCTGTGAAGGCGAGCTTGAAGCAGCGCTTCAGCATCTCCGA 535
||||| || |||||||| || ||||||||||||||||||||||| ||||| |||||||||
Sbjct 465 ATCCAAGCAAGGTCTCTCACTTGTGAAGGCGAGCTTGAAGCAGCTCTTCACCATCTCCGA 524
Query 536 AGTGTTGATCCTCTGCTCGCGTCGTTAATTGACATTCACCCACCACCAACGTTCGAGACT 595
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 525 AGTGTTGATCCTCTGCTCGCGTCTTTAATCGACATTCATCCACCACCAACGTTCGAGACT 584
Query 596 TTTCATACCCCGTTCTTGGCTTTGATTCGAAGCATTCTTTATCAGCAGTTAGCAGCTAAA 655
||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 585 TTTCAGACTCCGTTCTTGGCGTTGATTCGAAGCATTCTTTATCAGCAATTAGCAGCTAAA 644
Query 656 GCAGGGAATTCAATCTACACACGCTTCGTTGCCTTATGCGGCGGTGAAAACGGCGTCGTT 715
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GCAGGTAATTCAATCTACACACGCTTCGTTGCCTTATGCGGCGGTGAAAACGGCGTCGTG 704
Query 716 CCAGAGAATGTATTGCCTTTAACACCTCAACAGCTTCGTCAAATCGGTGTTTCCGGGCGT 775
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 705 CCAGAGAATGTATTGCCTTTAACACCTCAACAGCTTCGTCAAATTGGTGTTTCCGGGCGT 764
Query 776 AAAGCCAGTTACCTTCATGATCTTGCTAGGAAATATCAAAATGGGATCTTGTCGGATTCT 835
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 AAAGCGAGTTACCTTCATGATCTTGCTAGGAAATATCAAAATGGGATCTTGTCGGATTCT 824
Query 836 GGAATAGTGAATATGGATGAGAAATCTTTGTTCACCATGTTAACAATGGTGAATGGGATT 895
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 825 GGAATAGTGAATATGGATGAGAAATCTTTGTTCACGATGTTAACAATGGTGAATGGGATT 884
Query 896 GGGTCATGGTCCGTTCATATGTTTATGATAAACTCTCTTCATAGACCCGATGTGTTACCA 955
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 885 GGGTCATGGTCGGTCCATATGTTTATGATAAACTCTCTTCATAGACCTGATGTGTTACCA 944
Query 956 GTTAATGATCTTGGTGTAAGGAAGGGTGTGCAGATGCTTAATGGCATGGAGGATTTGCCT 1015
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 945 GTTAATGATCTTGGTGTAAGGAAGGGTGTGCAGATGCTTAATGGTATGGAGGATTTGCCT 1004
Query 1016 CGTCCATCGAAAATGGAGCAGCTTTGCGAGAAATGGCGTCCGTATAGATCAGTAGCGTCG 1075
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 CGTCCATCCAAAATGGAGCAGCTTTGCGAGAAATGGCGTCCGTATAGATCAGTAGCGTCT 1064
Query 1076 TGGTACATGTGGCGGCTCATTGAATCTAAAGGTACACCACCGAATGCTGCGGCTG-TGAC 1134
|||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| | ||
Sbjct 1065 TGGTACTTGTGGCGGCTCATTGAATCTAAAAATACACCACCTAATGCTGCGGCTGCT-AC 1123
Query 1135 GGCTGGAGCTGCTCTTTCGTTTACACAGTTGGAAGACATTcaacaacaagaa---gaa-- 1189
||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |||
Sbjct 1124 GGCCGGAGCTGCTCTTTCGTTTCCACAGTTGGAAGACATTCAGCAACAAGAACAAGAACA 1183
Query 1190 g-aaca--a-caacatca--a-caacaGCCGCAGCTTATGGACCCTCTTAATAATGTGTT 1242
| |||| | |||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1184 GCAACATCAACAACATCAGCAACAACAGCCGCAGCTTATGGACCCTCTTAATAATGTGTT 1243
Query 1243 CAGTATCGGG 1252
||||||||||
Sbjct 1244 CAGTATCGGG 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75802822950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5