BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476668

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G75250.1 | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:282...   411    4e-114


> AT1G75250.1 | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:28245073-28245453 
REVERSE LENGTH=381
Length=381

 Score =  411 bits (222),  Expect = 4e-114
 Identities = 254/270 (94%), Gaps = 0/270 (0%)
 Strand=Plus/Plus

Query  33   ATGGCGTCAAACTCAAGAAGTTCAATCTCGTCATGGACCTTTAATCAGAACAAGATGTTC  92
            |||||||||||||||||||||||||||||  ||||||| |||| ||| ||||||||||||
Sbjct  1    ATGGCGTCAAACTCAAGAAGTTCAATCTCACCATGGACGTTTAGTCAAAACAAGATGTTC  60

Query  93   GAGAGGGCCTTGGCAGTTTACGACAAGGACACACCCGACCGTTGGCACAATGTGGCAAAA  152
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   GAGAGGGCCTTGGCAGTTTACGACAAGGACACACCCGACCGATGGCACAATGTGGCAAAA  120

Query  153  GCTGTCGGAGGGAAAACTGTAGAGGAAGTGAAACGTCACTATGACATTCTCGTCGAGGAT  212
            ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct  121  GCTGTCGGAGGGAAAACTGTAGAAGAAGTGAAGCGCCACTATGACATTCTCGTCGAGGAT  180

Query  213  CTTTTCAACATCGAAACTGGTCGTGTCCCTTTGCCCAATTACAAGACCTTCGAATCTAAC  272
            ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CTCATCAACATCGAGACTGGTCGTGTCCCTTTGCCCAATTACAAGACCTTCGAATCTAAC  240

Query  273  TCAAGAGGCGTCAACGACTTTGACACGAGG  302
            |||||| || |||| ||||||||||| |||
Sbjct  241  TCAAGAAGCATCAATGACTTTGACACAAGG  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5