BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476670
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75270.1 | Symbols: DHAR2 | dehydroascorbate reductase 2 | c... 1190 0.0
> AT1G75270.1 | Symbols: DHAR2 | dehydroascorbate reductase 2 |
chr1:28250075-28251350 REVERSE LENGTH=935
Length=935
Score = 1190 bits (644), Expect = 0.0
Identities = 725/764 (95%), Gaps = 6/764 (1%)
Strand=Plus/Plus
Query 31 AAGAAAGATCGATGGCTCTCGATATCTGCGTCAAGGTTGCCGTCGGTGCTCCTGATGTTC 90
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 103 AAGAAAGATCGATGGCTCTAGATATCTGCGTGAAGGTTGCCGTCGGTGCTCCTGATGTTC 162
Query 91 TCGGAGATTGTCCGTTTAGCCAACGTGTTCTTCTGACCCTTGAGGAGAAGAAGCTTCCTT 150
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 163 TCGGCGACTGTCCGTTTAGCCAACGTGTTCTTCTGACACTTGAGGAGAAGAAGCTTCCCT 222
Query 151 ACAAGACCCATCTGATTAACGTCTCCGACAAACCCCAGTGGTTCTTAGACATTAGTCCGG 210
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 223 ACAAGACCCATCTGATTAACGTCTCCGACAAACCCCAATGGTTCTTAGACATTAGTCCAG 282
Query 211 AGGGGAAAGTTCCGGTGGTGAAGCTTGATGGCAAATGGGTGGCTGATTCAGATGTTATCG 270
||||||||||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 283 AGGGGAAAGTTCCGGTGGTGAAGCTTGATGGCAAATGGGTGGCTGATTCTGACGTAATTG 342
Query 271 TTGGACTTCTTGAGGATAAATATGCAGAGCCTTCTCTCAAGACACCTCCTGAATTCGCCT 330
||||||||||||| || |||||| ||||||||||||||||||| ||||||||||| || |
Sbjct 343 TTGGACTTCTTGAAGAGAAATATCCAGAGCCTTCTCTCAAGACTCCTCCTGAATTTGCTT 402
Query 331 CTGTGGGATCCAAAATCTTTGGTGCTTTTGTGACTTTCTTGAAGAGCAAAGACGCTAATG 390
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CTGTAGGATCCAAAATCTTTGGTGCTTTTGTGACTTTCTTGAAGAGCAAAGACGCTAATG 462
Query 391 ACGGATCCGAGAAGGCGTTGGTTGATGAGTTAGAAGCGTTGGAGAATCACTTGAAGACAC 450
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 ACGGATCCGAGAAGGCTTTGGTTGATGAGTTAGAAGCGTTGGAGAATCACTTGAAGACAC 522
Query 451 ATTCTGGTCCTTTTGTAGCTGGAGAGAAAG-TTACTGCTGTGGATCTGAGTTTAGCACCA 509
|||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||
Sbjct 523 ATTCTGGTCCTTTTGTAGCTGGAGAG-AAGATTACTGCAGTGGATTTGAGTTTAGCACCA 581
Query 510 AAGCTTTACCATCTTGAGGTTGCTCTTGGTCATTACAAGAACTGGTCTGTCCCTGAGAGC 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 AAGCTTTACCATCTTGAGGTTGCTCTTGGTCATTACAAGAACTGGTCTGTCCCTGAGAGC 641
Query 570 TTGACCAATGTTCGTAACTACGCCAAGGCTTTGTTCTCTAGAGAGTCGTTCGAGAAAACC 629
||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 642 TTGACCAGTGTTCGTAACTACGCCAAGGCTTTGTTCTCTAGGGAGTCGTTTGAGAACACC 701
Query 630 AAAGCTAAGAAAGAGATTGTGGTCGCGGGTTGGGAATCGAAGGTGAACGCGTGATGTGGA 689
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 702 AAGGCTAAGAAAGAGATTGTGGTTGCGGGTTGGGAATCGAAGGTGAATGCGTGATGTGGA 761
Query 690 TCCATGCTTCTCTAGTTAATGTTGCTTAAGAACTATTCTTCACAGAATAATGAA-AATGC 748
||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |||||
Sbjct 762 TCCATGCTTCTCTAGTTAATGTTGCTTTAGAACTATTCTTCACTGAATAAT-AAGAATGC 820
Query 749 ACGAATATATGCGTGTGTTCTTGTTTTTGTTAGAGTTGGTTATC 792
|||| ||| || |||||||||||||||||||||||||||||||
Sbjct 821 ACGAGTATGTG--TGTGTTCTTGTTTTTGTTAGAGTTGGTTATC 862
Score = 60.2 bits (32), Expect = 3e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1 TTTGCCTATTTCATTCATATTTTGCTTTTAAA 32
||||||||||||||||||||||||||||||||
Sbjct 21 TTTGCCTATTTCATTCATATTTTGCTTTTAAA 52
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41493405422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5