BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476672
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75290.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1474 0.0
AT1G75280.1 | Symbols: | NmrA-like negative transcriptional re... 1188 0.0
AT1G75300.1 | Symbols: | NmrA-like negative transcriptional re... 497 7e-140
AT1G75295.1 | Symbols: | other RNA | chr1:28255327-28257139 RE... 224 1e-57
> AT1G75290.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:28253890-28255173 FORWARD LENGTH=957
Length=957
Score = 1474 bits (798), Expect = 0.0
Identities = 908/961 (94%), Gaps = 8/961 (1%)
Strand=Plus/Plus
Query 55 ATGGCGTCGGAGAAAAGCAAGATTCTGGTGATCGGAGGAACTGGTCACATCGGTAAACTC 114
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 ATGGCGTCAGAGAAAAGCAAGATTCTGGTGATCGGAGGGACTGGTCACATCGGAAAACTC 60
Query 115 ATAATAGAAGCGAGCGTGAAAGCCGGACACTCCACACTGGCTCTGGTTAGAGAAGCCTCT 174
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 ATTATAGAAGCGAGCGTGAAAGCCGGACACTCCACACTGGCTCTCGTTAGAGAAGCCTC- 119
Query 175 G-TCTCCGATCTCGACAAGGGCAAAACCGTCCAGAATTTTAAAGATCTCGGCGTCACAAT 233
| ||||||||| | ||||||||||||||||||||||||| |||||| | ||||||||| |
Sbjct 120 GCTCTCCGATCCCAACAAGGGCAAAACCGTCCAGAATTTCAAAGATTTTGGCGTCACATT 179
Query 234 ACTTCACGGGGATTTGAACGATCACGAGAGCTTAGTGAAGGCCATTAAACAAGCCGATGT 293
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 180 ACTTCACGGGGATTTGAACGATCATGAGAGCTTAGTGAAGGCCATTAAACAGGCCGATGT 239
Query 294 GGTTATATCAACCGTTGGGAGCATGCAAATCTTGGATCAAACCAAGATCATTTCAGCTAT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGTTATATCAACCGTTGGGAGCATGCAAATCTTGGATCAAACCAAGATCATTTCAGCTAT 299
Query 354 TAAAGAAGCCGGTAACGTCAAGAGATTCTTTCCGTCTGAGTTTGGGATGGATGTGGACAG 413
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 300 TAAAGAAGCCGGTAACGTCAAGAGATTCTTGCCGTCTGAGTTTGGGATGGACGTGGACAA 359
Query 414 GACGAGTGCGGTTGAGCCGGCGAAATCGGCTTTTGC-AGGGAAACTACAGACCAGGAGA- 471
| | |||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||
Sbjct 360 GTCAAGTGCGGTTGAGCCTGCGAAATCGGCTTTTGGGAGG-AAACTACAGACAAGGAGAG 418
Query 472 ACCGTTGAAGCCGAAGGAATACCATACACTTACCTTGTTACCAATTACTTTGCTGGTTAC 531
|| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACA-TAGAAGCGGAAGGAATACCATACACTTACCTTGTTACCAATTACTTTGCTGGTTAC 477
Query 532 TACTTGCCCACATTGGTTCAGTTAGAGCCTGGTCTCACTTCTCCTCCTAAAGATAAAGTC 591
||||||||||||||||||||| | ||||| ||||||||||||||||||| ||||||||||
Sbjct 478 TACTTGCCCACATTGGTTCAGCTGGAGCCAGGTCTCACTTCTCCTCCTAGAGATAAAGTC 537
Query 592 AAAATATTT-GGAGACGGAAATGCCAAAGCTGTGATCAACAAGGAGGAAGATATTGCTGC 650
||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 538 AAAAT-TTTCGGAGATGGAAATGTCAAAGCTGTGATCAACAAGGAGGAAGATATTGCTGC 596
Query 651 TTACACTATCAAAGCGGTGGATGATCCGAGGACTCTAAATAAAACCCTCTACATTAGTCC 710
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct 597 TTACACTATCAAAGCGGTGGATGATCCAAGGACTCTGAATAAAACCCTCTACATTAATCC 656
Query 711 TCCTAACAACACTTTATCAATGAACGAAATAGTCACCTTGTGGGAGAAAAAGATCGGCAA 770
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 657 TCCTAACAACACTTTATCGATGAACGAAATAGTCACCTTGTGGGAGAAAAAGATTGGCAA 716
Query 771 GTCTCTTGAGAAGATATACATGTCAGAGGAACAAATCTTTAAAAGCATCCAAGAGTCTCC 830
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GTCTGTTGAGAAGATTTACATGTCAGAGGAACAAATCTTTAAAAGCATCCAAGAGTCTCC 776
Query 831 GGTTCCCTTCAACGTTCTTCTGTCGATAAACCACGCAGTGTTTGTGAAAGGTGATCAAAC 890
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 777 GGTTCCCTTCAACGTTCTTCTGTCGATAAACCACGCGGTGTTTGTGAAAGGAGATCAGAC 836
Query 891 CAATTTCAGTATAGAGCCTTCGTTCGGTTTTGAAGCCTCTGAGCTTTACCCTGATATCAA 950
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 837 CAATTTCACTATAGAGCCTTCATTCGGTTTTGAAGCCTCTGAGCTTTACCCTGATATCAA 896
Query 951 GTACACGAGTATTGAGGAGTATCTCAGTTATTTCGCTTAATGAACTTCATTAAACACCTA 1010
||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 897 GTACACGAGTATTGATGAGTATCTCAGTTATTTCGCTTTAGGAACTTCATTAAACACCTA 956
Query 1011 A 1011
|
Sbjct 957 A 957
> AT1G75280.1 | Symbols: | NmrA-like negative transcriptional
regulator family protein | chr1:28251960-28253619 FORWARD LENGTH=1267
Length=1267
Score = 1188 bits (643), Expect = 0.0
Identities = 878/990 (89%), Gaps = 22/990 (2%)
Strand=Plus/Plus
Query 35 ATCA-CGTTTCAAATCTAATCATGGCGTCGGAGAAAAGCAAGATTCTGGTGATCGGAGGA 93
|||| ||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 51 ATCATCGTTTGAAA-CTAAACATGGCGACGGAGAAAAGCAAGATTCTGGTGATCGGAGGA 109
Query 94 ACTGGTCACATCGGTAAACTCATAATAGAAGCGAGCGTGAAAGCCGGACACTCCACACTG 153
|||||| ||||||| ||| || || |||||||||||| ||||| || ||||||||| |
Sbjct 110 ACTGGTTACATCGGGAAATTCCTAGTAGAAGCGAGCGCCAAAGCTGGCCACTCCACATTC 169
Query 154 GCTCTGGTTAGAGAAGCCTCTGTCTCCGAT-CTCGACAAGGGCAAAACCGTCCAGAATTT 212
||||| ||||||||||| || | |||||| || | |||||||||||||||||||| |||
Sbjct 170 GCTCTCGTTAGAGAAGCAACTCTATCCGATCCT-GTCAAGGGCAAAACCGTCCAGAGTTT 228
Query 213 TAAAGATCTCGGCGTCACAATACTTCACGGGGATTTGAACGATCACGAGAGCTTAGTGAA 272
||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 229 CAAAGATCTCGGCGTCACAATACTACACGGAGATTTGAATGATCACGAGAGCTTAGTGAA 288
Query 273 GGCCATTAAACAAGCCGATGTGGTTATATCAACCGTTGGGAGCATGCAAATCTTGGATCA 332
||| |||||||| | |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 289 GGCTATTAAACAGGTTGATGTGGTGATATCTACCGTTGGGAGCATGCAAATCTTGGATCA 348
Query 333 AACCAAGATCATTTCAGCTATTAAAGAAGCCGGTAACGTCAAGAGATTCTTTCCGTCTGA 392
||||||||||||||| || || |||||||||||||| |||||||||||||| ||||||||
Sbjct 349 AACCAAGATCATTTCCGCCATCAAAGAAGCCGGTAATGTCAAGAGATTCTTGCCGTCTGA 408
Query 393 GTTTGGGATGGATGTGGACAGGACGAGTGCGGTTGAGCCGGCGAAATCGGCTTTTGCAGG 452
||||||| |||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 409 GTTTGGGGTGGATGTGGATAGGACGAGTGCGGTTGAGCCAGCTAAATCGGCTTTTGCAGG 468
Query 453 GAA-ACTACAGACCAGGAGAACCGTTGAAGCCGAAGGAATACCATACACTTAC-CTTGTT 510
||| | |||||| |||||||||| | ||||| ||||||||||||||||||||| || |||
Sbjct 469 GAAGA-TACAGATCAGGAGAACCATCGAAGCGGAAGGAATACCATACACTTACGCT-GTT 526
Query 511 ACCAATTACTTTGCTGGTTACTACTTGCCCACATTGGTTCAGTTAGAGCCTGGTCTCACT 570
||| || ||||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 527 ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACT 586
Query 571 TCTCCTCCTAAAGATAAAGTCAAAATAT-TTGGAGACGGAAATGCCAAAGCTGTGATCAA 629
|||||||||| ||| ||||||| || | |||| || |||||||||||||||||||||||
Sbjct 587 TCTCCTCCTAGAGACAAAGTCACCAT-TCTTGGCGATGGAAATGCCAAAGCTGTGATCAA 645
Query 630 CAAGGAGGAAGATATTGCTGCTTACACTATCAAAGCGGTGGATGATCCGAGGACTCTAAA 689
||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct 646 CAAAGAGGAAGATATTGCTGCTTACACGATCAAGGCGGTGGATGATCCTAGGACTCTGAA 705
Query 690 TAAAACCCTCTACATTA-GTCCTCCTAACAACACTTTATCAATGAACGAAATAGTCACCT 748
|||| ||| ||||||| | ||| |||||||||||||||| |||||||||||||||||||
Sbjct 706 CAAAATCCTATACATTAAG-CCTTCTAACAACACTTTATCGATGAACGAAATAGTCACCT 764
Query 749 TGTGGGAGAAAAAGATCGGCAAGTCTCTTGAGAAGA-TATACATGTCAGAGGAACAAAT- 806
|||||||||||||||| ||||||||||||||||||| | || | ||||||||||| |
Sbjct 765 TGTGGGAGAAAAAGATTGGCAAGTCTCTTGAGAAGACTC-ACCTCCCAGAGGAACAACTA 823
Query 807 CTTTAAAAGCATCCAAGAGTCTCCGGTTCCCTTCAACGTTCTTCTGTCGATAAACCACGC 866
||| ||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||
Sbjct 824 CTT-AAAAGCATCCAAGAGTCTCCGATTCCCATCAATGTTGTTCTGTCGATAAACCACGC 882
Query 867 AGTGTTTGTGAAAGGTGATCAAACCAATTTCAGTATAGAGCCTTCGTTCGGTTTTGAAGC 926
||||||||||| || ||| | ||||| |||||||||||||||| || ||| | |||||
Sbjct 883 GGTGTTTGTGAATGGAGAT-A--CCAATATCAGTATAGAGCCTTCCTTTGGTGTGGAAGC 939
Query 927 CTCTGAGCTTTACCCTGATATCAAGTACACGAGTATTGAGGAGTATCTCAGTTATTTCGC 986
||||||||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||
Sbjct 940 CTCTGAGCTTTACCCTGATGTCAAGTACACAAGTGTTGACGAGTATCTCAGTTATTTCGC 999
Query 987 TTAATGAACTTCATTA-AACACCTAACTTT 1015
|| ||||||||||||| || || ||| |||
Sbjct 1000 TTGATGAACTTCATTATAA-ACGTAA-TTT 1027
Score = 62.1 bits (33), Expect = 1e-08
Identities = 52/60 (87%), Gaps = 5/60 (8%)
Strand=Plus/Plus
Query 1036 TGTAATGGTGAA---GAATGTG--TGTGAGACTAATCAGTAATCACAGTGCTTTACCTCT 1090
|||||||||||| | |||| |||| |||||||||||||||||||||||||||||||
Sbjct 1079 TGTAATGGTGAATGTGTGTGTGTATGTGTGACTAATCAGTAATCACAGTGCTTTACCTCT 1138
> AT1G75300.1 | Symbols: | NmrA-like negative transcriptional
regulator family protein | chr1:28255495-28257040 FORWARD LENGTH=1139
Length=1139
Score = 497 bits (269), Expect = 7e-140
Identities = 469/566 (83%), Gaps = 12/566 (2%)
Strand=Plus/Plus
Query 54 CATGGCGTCGGAGAAAAGCAAGATTCTGGTGATCGGAGGAACTGGTCACATCGGTA-AAC 112
|||| || ||||||||||||||||||||||||||||||| |||||| |||| || | ||
Sbjct 57 CATGACGACGGAGAAAAGCAAGATTCTGGTGATCGGAGGGACTGGTTACATGGG-AGAAT 115
Query 113 TCATAATAGAAGCGAGCGTGAAAGCCGG-ACACTCCA-CACTGGCTCTGGTTAGAGAAGC 170
|||| | |||| ||||| ||||||||| | || ||| || | ||||| || |||||||
Sbjct 116 TCATCGTTGAAGGGAGCGCGAAAGCCGGTA-AC-CCAACATTCGCTCTTGTCCGAGAAGC 173
Query 171 CTCTGTCTCCGATC-TCGACAAGGGCAAAACCGTCCAGAATTTTAAAGATCTCGGCGTCA 229
||| |||| |||| | | |||| |||||||| |||||| || ||||||||||| ||||
Sbjct 174 ATCTCTCTCTGATCCT-GTCAAGAGCAAAACCATCCAGAGCTTCAAAGATCTCGGTGTCA 232
Query 230 CAATACTTCACGGGGATTTGAACGATCACGAGAGCTTAGTGAAGGCCATTAAACAAGCCG 289
||||||| ||||| |||||||| ||||| ||||||||||| |||||||||||||| | |
Sbjct 233 CAATACTACACGGAGATTTGAATGATCATGAGAGCTTAGTTAAGGCCATTAAACAGGTTG 292
Query 290 ATGTGGTTATATCAACCGTTGGG-AGCATGCAAATCTTGGATCAAACCAAGATCATTTCA 348
||||||| ||||||||| | ||| | || ||||||||| ||||||||||||||||||||
Sbjct 293 ATGTGGTGATATCAACCATCGGGCA-CAAGCAAATCTTTGATCAAACCAAGATCATTTCC 351
Query 349 GCTATTAAAGAAGCCGGTAACGTCAAGAGATTCTTTCCGTCTGAGTTTGGGATGGATGTG 408
|| ||||||||||| |||||||||||||||||||| ||| ||||||||||||| || ||
Sbjct 352 GCCATTAAAGAAGCTGGTAACGTCAAGAGATTCTTGCCGGCTGAGTTTGGGATAGACGTT 411
Query 409 GACAGGACGAGTGCGGTTGAGCCGGCGAAATCGGCT-TTTGCAGGGAAACTACAGACCAG 467
|| ||||| ||||||||||||||||| ||||| | ||||||||||| |||||| |||
Sbjct 412 GAGAGGACCAGTGCGGTTGAGCCGGCAAAATCAT-TATTTGCAGGGAAGGTACAGATCAG 470
Query 468 GAGAACCGTTGAAGCCGAAGGAATACCATACACTTACCTTGTTACCAATTACTTTGCTGG 527
|||| || ||||||| ||||||||||||||||||||| |||||| ||||| || ||| ||
Sbjct 471 GAGAGCCATTGAAGCTGAAGGAATACCATACACTTACGTTGTTAGCAATTGCTCTGCCGG 530
Query 528 TTACTACTTGCCCACATTGGTTCAGTTAGAGCCTGGTCTCACTTCTCCTCCTAAAGATAA 587
|| ||||||| || || ||||||| ||| ||||||||| ||||| | ||| ||| ||
Sbjct 531 TTTTTACTTGCGTACGTTACTTCAGTTCGAGTCTGGTCTCATTTCTCATACTAGAGACAA 590
Query 588 AGTCAAAATATTTGGAGACGGAAATG 613
| || || ||||| ||| |||||
Sbjct 591 GGCCATCATCTTTGGCGACAAAAATG 616
Score = 424 bits (229), Expect = 1e-117
Identities = 363/426 (85%), Gaps = 16/426 (4%)
Strand=Plus/Plus
Query 573 TCCTCCTAAAGATAAAGTCAAAATATTTGGAGACGGAAATGCCAAAGCTGTGATCAACAA 632
|||||||| ||| ||||||| ||||| || || ||||||||||||| ||||||||||||
Sbjct 618 TCCTCCTAGAGACAAAGTCACCATATTAGGCGATGGAAATGCCAAAGTTGTGATCAACAA 677
Query 633 GGAGGAAGATATTGCTGCTTACACT-ATCAAAGCGGTGGATGATCCGAGGACTCTAAATA 691
||||||||| |||| ||||||| | ||||| ||||||||||||| |||||||| || |
Sbjct 678 AGAGGAAGATGTTGCAGCTTACA-TGATCAAGGCGGTGGATGATCTAAGGACTCTGAACA 736
Query 692 AAACCCTCTACATTAGTCCTCCTAACAACACTTTATCAATGAACGAAATAGTCACCTTGT 751
|||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||
Sbjct 737 AAACCCTCTACATTAGTCCTCCTAACAACATTTTATCGATGAACGAAATGGTCACCTTGT 796
Query 752 GGGAGAAAAAGATCGGCAAGTCTCTTGAGAAGA-TATACATGTCAGAGGAACAAATCTTT 810
||||||||||||||||||||||||||||||||| | |||| ||||| || |||||| ||
Sbjct 797 GGGAGAAAAAGATCGGCAAGTCTCTTGAGAAGACTC-ACATATCAGAAGAGCAAATCCTT 855
Query 811 AAAAGCATCCAAGAGTCTCCGGTTCCCTTCAACGTTCTTCT-GTCGATAAACCACGCAGT 869
||||||||||||| | ||| | | | | ||| ||| ||| ||||||||||| ||
Sbjct 856 AAAAGCATCCAAG--T-TCC----CA-T-CGATGTT-TTCAAGTCTATAAACCACGCGGT 905
Query 870 GTTTGTGAAAGGTGATCAAACCAATTTCAGTATAGAGCCTTCGTTCGGTTTTGAAGCCTC 929
||||||||| || ||||| |||| ||||| |||||||||| ||||||| ||||||||
Sbjct 906 GTTTGTGAAGGGAGATCAGACCAGTTTCACAATAGAGCCTTGGTTCGGTGAAGAAGCCTC 965
Query 930 TGAGCTTTACCCTGATATCAAGTACACGAGTATTGAGGAGTATCTCAGTTATTTCGCTTA 989
|| ||||||||||||| ||||||||||||||||||| |||||||||||| | ||| |||
Sbjct 966 TGTGCTTTACCCTGATGTCAAGTACACGAGTATTGATGAGTATCTCAGTCAATTCACTTG 1025
Query 990 ATGAAC 995
| ||||
Sbjct 1026 A-GAAC 1030
> AT1G75295.1 | Symbols: | other RNA | chr1:28255327-28257139
REVERSE LENGTH=1327
Length=1327
Score = 224 bits (121), Expect = 1e-57
Identities = 152/167 (91%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 658 ATCAAAGCGGTGGATGATCCGAGGACTCTAAATAAAACCCTCTACATTAGTCCTCCTAAC 717
||||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 415 ATCAAGGCGGTGGATGATCTAAGGACTCTGAACAAAACCCTCTACATTAGTCCTCCTAAC 356
Query 718 AACACTTTATCAATGAACGAAATAGTCACCTTGTGGGAGAAAAAGATCGGCAAGTCTCTT 777
|||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 355 AACATTTTATCGATGAACGAAATGGTCACCTTGTGGGAGAAAAAGATCGGCAAGTCTCTT 296
Query 778 GAGAAGA-TATACATGTCAGAGGAACAAATCTTTAAAAGCATCCAAG 823
||||||| | |||| ||||| || |||||| |||||||||||||||
Sbjct 295 GAGAAGACTC-ACATATCAGAAGAGCAAATCCTTAAAAGCATCCAAG 250
Score = 154 bits (83), Expect = 2e-36
Identities = 157/192 (82%), Gaps = 8/192 (4%)
Strand=Plus/Minus
Query 54 CATGGCGTCGGAGAAAAGCAAGATTCTGGTGATCGGAGGAACTGGTCACATCGGTA-AAC 112
|||| || ||||||||||||||||||||||||||||||| |||||| |||| || | ||
Sbjct 1103 CATGACGACGGAGAAAAGCAAGATTCTGGTGATCGGAGGGACTGGTTACATGGG-AGAAT 1045
Query 113 TCATAATAGAAGCGAGCGTGAAAGCCGG-ACACTCCA-CACTGGCTCTGGTTAGAGAAGC 170
|||| | |||| ||||| ||||||||| | || ||| || | ||||| || |||||||
Sbjct 1044 TCATCGTTGAAGGGAGCGCGAAAGCCGGTA-AC-CCAACATTCGCTCTTGTCCGAGAAGC 987
Query 171 CTCTGTCTCCGATC-TCGACAAGGGCAAAACCGTCCAGAATTTTAAAGATCTCGGCGTCA 229
||| |||| |||| | | |||| |||||||| |||||| || ||||||||||| ||||
Sbjct 986 ATCTCTCTCTGATCCT-GTCAAGAGCAAAACCATCCAGAGCTTCAAAGATCTCGGTGTCA 928
Query 230 CAATACTTCACG 241
||||||| ||||
Sbjct 927 CAATACTACACG 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5