BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476678
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75330.1 | Symbols: OTC | ornithine carbamoyltransferase | c... 2097 0.0
> AT1G75330.1 | Symbols: OTC | ornithine carbamoyltransferase |
chr1:28266259-28268412 REVERSE LENGTH=1355
Length=1355
Score = 2097 bits (1135), Expect = 0.0
Identities = 1278/1347 (95%), Gaps = 10/1347 (1%)
Strand=Plus/Plus
Query 1 CTCCGAATTCAGACGATGGCGGCTGCAATGGCTTCTCACGTTTCGACGGCTCGATCACCT 60
||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 15 CTCTGAATTAAGACGATGGCGGCTGCAATGGCTTCTCATGTTTCGACGGCTCGATCACCG 74
Query 61 GCTCTTTCCTTCTCTTCTTCGTCATCCTCCTTCTTCCCCGGCACTACTCTCCGGAGATTC 120
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 75 GCTCTTTCCTTCTCTTCTTCGTCTTCCTCCTTCTTCCCCGGTACTACTCTTCGGAGATTC 134
Query 121 TCCGCCGTTTCACTCCCTTCTCCGGCCCTCCCTCGCCTTCGTGTTTCTTGTCAAGCCTCC 180
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 135 TCCGCCGTTTCACTCCCTTCTCCTGCTCTCCCTCGCCTTCGTGTTTCATGTCAAGCCTCC 194
Query 181 TCCGTCACTTCGCCTTCTTCTACTTCCGATGCCAAAGGAAAGTCTGACCTGAAAGACTTT 240
||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||
Sbjct 195 TCCGTCACTTCGCCTTCTTCTCCTTCCGATGTCAAAGGAAAATCTGACCTGAAAGACTTT 254
Query 241 CTGGCCATAGATGATTTTGACACAGCCACCATAAAAAAGATTTTAGACAAGGCTTCAGAG 300
||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 255 CTGGCAATAGATGATTTTGACACAGCCACCATTAAAACGATTTTAGACAAGGCTTCAGAG 314
Query 301 GTTAAGGCCTTGCTTAAATCAGGAGAGAGAAATTATCTACCTTTTAAAGGGAAGTCTATG 360
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 315 GTTAAGGCCTTGCTGAAATCAGGGGAGAGAAATTATCTACCTTTTAAAGGGAAGTCTATG 374
Query 361 TCTATGATCTTTGCTAAACCCTCCATGAGGACTCGGGTTTCTTTTGAGACTGGTTTTTTC 420
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 375 TCTATGATCTTTGCAAAACCTTCCATGAGGACTCGGGTTTCGTTTGAGACTGGTTTTTTC 434
Query 421 TTGCTTGGTGGCCATGCGTTATATCTAGGACCCAATGACATTCAGATGGGTAAGCGGGAG 480
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 435 TTGCTCGGTGGCCATGCGTTATATCTAGGTCCCAATGACATTCAGATGGGTAAGCGGGAG 494
Query 481 GAAACTCGTGATGTTGCTCGTGTTCTCTCACGCTATAATGACATCATTATGGCTCGTGTA 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 495 GAAACTCGTGATGTTGCTCGTGTTCTTTCACGCTATAATGACATCATTATGGCTCGTGTA 554
Query 541 TTTGCTCATCAGGACATCCTTGATTTGGCTAACTACTCGAGTGTACCAGTTGTCAATGGT 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TTTGCTCATCAGGACATTCTTGATTTGGCTAACTACTCGAGTGTACCAGTTGTCAATGGT 614
Query 601 CTGACAGATCATAACCATCCTTGCCAAATCATGGCTGATGCCCTCACAATAATTGAGCAC 660
||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 615 CTGACTGATCATAACCATCCTTGCCAAATCATGGCCGATGCCCTCACAATGATAGAGCAC 674
Query 661 ATCGGTCAAGTCGAAGGGACAAAGGTTGTGTATGTTGGAGATGGGAACAACATGGTACAC 720
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 675 ATTGGTCAAGTTGAAGGGACAAAGGTTGTGTATGTTGGAGATGGGAACAACATGGTTCAC 734
Query 721 TCTTGGTTAGAATTGGCATCCGTTATTCCTTTCCACTTTGTCTGCGCTTGCCCAAAAGGG 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 735 TCTTGGTTAGAATTGGCATCCGTTATTCCATTCCACTTTGTCTGCGCTTGCCCAAAAGGG 794
Query 781 TATGAACCAGACAAAGAAAGAGTTTCAAAGGCAAAGCAAGCTGGCTTAAGTAAGATAGAG 840
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 795 TATGAACCAGACAAAGAAAGAGTTTCAAAGGCAAAGCAAGCTGGATTAAGTAAGATAGAG 854
Query 841 ATCACCAATGATCCTAAAGAAGCTGTTATTGGAGCTGATGTTGTGTACTCAGACGTATGG 900
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 855 ATCACCAATGATCCTAAAGAAGCTGTTATTGGAGCAGATGTTGTGTACTCAGACGTATGG 914
Query 901 GCCAGTATGGGGCAAAAGGATGAAGCCGAAGCTCGCCGTAAAGCATTCCAAGGATTCCAG 960
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 915 GCCAGTATGGGTCAAAAGGATGAAGCCGAAGCTCGCCGGAAAGCATTCCAAGGATTCCAG 974
Query 961 GTGGATGAAGCTCTTATGAAGTTGGCGGGTCCAAAAGCCTACTTCATGCATTGTTTGCCT 1020
|||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 975 GTGGATGAAGCTCTGATGAAGTTGGCGGGTCAAAAAGCCTATTTCATGCATTGTTTGCCT 1034
Query 1021 GCAGAAAGAGGAGTGGAGGTGACTAATGGAGTCGTGGAGGCTCCTTATTCCATTGTCTTT 1080
||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1035 GCAGAGAGAGGAGTTGAGGTGACCAATGGAGTCGTAGAGGCTCCTTATTCCATTGTCTTT 1094
Query 1081 CCACAGGCGGAGAATCGCATGCATGCCCAAAATGCAATAATGCTTCATTTGCTCGGCTTT 1140
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1095 CCACAGGCGGAGAATCGCATGCATGCTCAAAATGCTATAATGCTTCACTTGCTCGGCTTT 1154
Query 1141 TAAACCTCTTTGTTATCTTAGCTCTCTCATGCGGTTTGCTGGTGTACC-C-TTCGACTTA 1198
|||||||||||||||||||||||||| ||||||||| | | ||||||| | || ||||||
Sbjct 1155 TAAACCTCTTTGTTATCTTAGCTCTCGCATGCGGTTGGTTCGTGTACCACATT-GACTTA 1213
Query 1199 ATAATGTACTAGTATTTATTAACCTTAGTTTGAGAAACC-T-TGATGAATAATATTTGTG 1256
||||||||||| | || |||||||||||||||||||||| | |||||||||| |||||||
Sbjct 1214 ATAATGTACTA-T-TT-ATTAACCTTAGTTTGAGAAACCGTATGATGAATAAGATTTGTG 1270
Query 1257 GCTGATTAAGCTGGGAATATGAATGAGCTTCTTTTATATATATGACCCATATGGATATCA 1316
||||||| ||||||||||||||||||||| ||||| |||||||||| |||| | ||| |
Sbjct 1271 GCTGATTCAGCTGGGAATATGAATGAGCTACTTTTCTATATATGACACATA-GT-TATAA 1328
Query 1317 ATATTTATAACTAGTTACTACATCTCT 1343
||||||||||||||||| |||||||||
Sbjct 1329 ATATTTATAACTAGTTATTACATCTCT 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66114117765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5