BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476678 Length=1343 Score E Sequences producing significant alignments: (Bits) Value AT1G75330.1 | Symbols: OTC | ornithine carbamoyltransferase | c... 2097 0.0 > AT1G75330.1 | Symbols: OTC | ornithine carbamoyltransferase | chr1:28266259-28268412 REVERSE LENGTH=1355 Length=1355 Score = 2097 bits (1135), Expect = 0.0 Identities = 1278/1347 (95%), Gaps = 10/1347 (1%) Strand=Plus/Plus Query 1 CTCCGAATTCAGACGATGGCGGCTGCAATGGCTTCTCACGTTTCGACGGCTCGATCACCT 60 ||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 15 CTCTGAATTAAGACGATGGCGGCTGCAATGGCTTCTCATGTTTCGACGGCTCGATCACCG 74 Query 61 GCTCTTTCCTTCTCTTCTTCGTCATCCTCCTTCTTCCCCGGCACTACTCTCCGGAGATTC 120 ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| Sbjct 75 GCTCTTTCCTTCTCTTCTTCGTCTTCCTCCTTCTTCCCCGGTACTACTCTTCGGAGATTC 134 Query 121 TCCGCCGTTTCACTCCCTTCTCCGGCCCTCCCTCGCCTTCGTGTTTCTTGTCAAGCCTCC 180 ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||| Sbjct 135 TCCGCCGTTTCACTCCCTTCTCCTGCTCTCCCTCGCCTTCGTGTTTCATGTCAAGCCTCC 194 Query 181 TCCGTCACTTCGCCTTCTTCTACTTCCGATGCCAAAGGAAAGTCTGACCTGAAAGACTTT 240 ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| Sbjct 195 TCCGTCACTTCGCCTTCTTCTCCTTCCGATGTCAAAGGAAAATCTGACCTGAAAGACTTT 254 Query 241 CTGGCCATAGATGATTTTGACACAGCCACCATAAAAAAGATTTTAGACAAGGCTTCAGAG 300 ||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 255 CTGGCAATAGATGATTTTGACACAGCCACCATTAAAACGATTTTAGACAAGGCTTCAGAG 314 Query 301 GTTAAGGCCTTGCTTAAATCAGGAGAGAGAAATTATCTACCTTTTAAAGGGAAGTCTATG 360 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 315 GTTAAGGCCTTGCTGAAATCAGGGGAGAGAAATTATCTACCTTTTAAAGGGAAGTCTATG 374 Query 361 TCTATGATCTTTGCTAAACCCTCCATGAGGACTCGGGTTTCTTTTGAGACTGGTTTTTTC 420 |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 375 TCTATGATCTTTGCAAAACCTTCCATGAGGACTCGGGTTTCGTTTGAGACTGGTTTTTTC 434 Query 421 TTGCTTGGTGGCCATGCGTTATATCTAGGACCCAATGACATTCAGATGGGTAAGCGGGAG 480 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 435 TTGCTCGGTGGCCATGCGTTATATCTAGGTCCCAATGACATTCAGATGGGTAAGCGGGAG 494 Query 481 GAAACTCGTGATGTTGCTCGTGTTCTCTCACGCTATAATGACATCATTATGGCTCGTGTA 540 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 495 GAAACTCGTGATGTTGCTCGTGTTCTTTCACGCTATAATGACATCATTATGGCTCGTGTA 554 Query 541 TTTGCTCATCAGGACATCCTTGATTTGGCTAACTACTCGAGTGTACCAGTTGTCAATGGT 600 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 555 TTTGCTCATCAGGACATTCTTGATTTGGCTAACTACTCGAGTGTACCAGTTGTCAATGGT 614 Query 601 CTGACAGATCATAACCATCCTTGCCAAATCATGGCTGATGCCCTCACAATAATTGAGCAC 660 ||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct 615 CTGACTGATCATAACCATCCTTGCCAAATCATGGCCGATGCCCTCACAATGATAGAGCAC 674 Query 661 ATCGGTCAAGTCGAAGGGACAAAGGTTGTGTATGTTGGAGATGGGAACAACATGGTACAC 720 || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 675 ATTGGTCAAGTTGAAGGGACAAAGGTTGTGTATGTTGGAGATGGGAACAACATGGTTCAC 734 Query 721 TCTTGGTTAGAATTGGCATCCGTTATTCCTTTCCACTTTGTCTGCGCTTGCCCAAAAGGG 780 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 735 TCTTGGTTAGAATTGGCATCCGTTATTCCATTCCACTTTGTCTGCGCTTGCCCAAAAGGG 794 Query 781 TATGAACCAGACAAAGAAAGAGTTTCAAAGGCAAAGCAAGCTGGCTTAAGTAAGATAGAG 840 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 795 TATGAACCAGACAAAGAAAGAGTTTCAAAGGCAAAGCAAGCTGGATTAAGTAAGATAGAG 854 Query 841 ATCACCAATGATCCTAAAGAAGCTGTTATTGGAGCTGATGTTGTGTACTCAGACGTATGG 900 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 855 ATCACCAATGATCCTAAAGAAGCTGTTATTGGAGCAGATGTTGTGTACTCAGACGTATGG 914 Query 901 GCCAGTATGGGGCAAAAGGATGAAGCCGAAGCTCGCCGTAAAGCATTCCAAGGATTCCAG 960 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 915 GCCAGTATGGGTCAAAAGGATGAAGCCGAAGCTCGCCGGAAAGCATTCCAAGGATTCCAG 974 Query 961 GTGGATGAAGCTCTTATGAAGTTGGCGGGTCCAAAAGCCTACTTCATGCATTGTTTGCCT 1020 |||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 975 GTGGATGAAGCTCTGATGAAGTTGGCGGGTCAAAAAGCCTATTTCATGCATTGTTTGCCT 1034 Query 1021 GCAGAAAGAGGAGTGGAGGTGACTAATGGAGTCGTGGAGGCTCCTTATTCCATTGTCTTT 1080 ||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1035 GCAGAGAGAGGAGTTGAGGTGACCAATGGAGTCGTAGAGGCTCCTTATTCCATTGTCTTT 1094 Query 1081 CCACAGGCGGAGAATCGCATGCATGCCCAAAATGCAATAATGCTTCATTTGCTCGGCTTT 1140 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct 1095 CCACAGGCGGAGAATCGCATGCATGCTCAAAATGCTATAATGCTTCACTTGCTCGGCTTT 1154 Query 1141 TAAACCTCTTTGTTATCTTAGCTCTCTCATGCGGTTTGCTGGTGTACC-C-TTCGACTTA 1198 |||||||||||||||||||||||||| ||||||||| | | ||||||| | || |||||| Sbjct 1155 TAAACCTCTTTGTTATCTTAGCTCTCGCATGCGGTTGGTTCGTGTACCACATT-GACTTA 1213 Query 1199 ATAATGTACTAGTATTTATTAACCTTAGTTTGAGAAACC-T-TGATGAATAATATTTGTG 1256 ||||||||||| | || |||||||||||||||||||||| | |||||||||| ||||||| Sbjct 1214 ATAATGTACTA-T-TT-ATTAACCTTAGTTTGAGAAACCGTATGATGAATAAGATTTGTG 1270 Query 1257 GCTGATTAAGCTGGGAATATGAATGAGCTTCTTTTATATATATGACCCATATGGATATCA 1316 ||||||| ||||||||||||||||||||| ||||| |||||||||| |||| | ||| | Sbjct 1271 GCTGATTCAGCTGGGAATATGAATGAGCTACTTTTCTATATATGACACATA-GT-TATAA 1328 Query 1317 ATATTTATAACTAGTTACTACATCTCT 1343 ||||||||||||||||| ||||||||| Sbjct 1329 ATATTTATAACTAGTTATTACATCTCT 1355 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66114117765 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5