BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476679
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75340.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 2085 0.0
> AT1G75340.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr1:28268970-28271948 REVERSE LENGTH=1566
Length=1566
Score = 2085 bits (1129), Expect = 0.0
Identities = 1401/1527 (92%), Gaps = 40/1527 (3%)
Strand=Plus/Plus
Query 1 GAAGTTTTTAGCAGCGAGTATGAGGAAGGAACTGTGTAGAAACTTTCAGCGTGGAAGTTG 60
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 57 GAAGGTTTTAGCTGCGAGTATGAGGAAGGAACTGTGTAGAAACTTTCAGCGTGGCAGTTG 116
Query 61 TAGGTATGGGGAAAATTGTAGATTTCTTCATCCACAACAAGCTAAGCCAAATAATCCCTT 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TAGGTATGGGGAAAACTGTAGATTTCTTCATCCACAACAAGCTAAGCCAAATAATCCCTT 176
Query 121 TGGCTTTGGTacac--aa-caacagccacaacaacaacaacagcaacaGAATAGTTCTAA 177
|||||||||||||| || ||||| | |||||| || || |||||||| |||||||| ||
Sbjct 177 TGGCTTTGGTACACAAAACCAACAACAACAACAGCAGCAGCAGCAACAAAATAGTTCGAA 236
Query 178 TCCTTTTGGATTTGGTGTACAAGGTGGTGGTTCCAGCAGACCGAATCAATTCCAGCCTTT 237
||||||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct 237 CCCTTTTGGATTTGGTGTACAAAGTGGTGGTTCCAGCAGACCGAATCAGTT----CC--- 289
Query 238 TGAGAATACATGGTCAAGAACGGCTTCTACACCTACTGCTGGTGGTGGTGCTGCTGCTGC 297
||||||| |||||| ||||||||||||||||||||| |||||||| ||||||| || |
Sbjct 290 --AGAATACTTGGTCACGAACGGCTTCTACACCTACTGGTGGTGGTGCTGCTGCTTCTAC 347
Query 298 GCAGCAGGCTGGTAAACAGACGCAGCCGGCAGACCATAAATGCACAGATCCTGCTGCGTG 357
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 348 ACAGCAGACTGGTAAACAGACGCAGCCGGCAGATCATAAATGCACAGATCCTGCTGCGTG 407
Query 358 TAAGCGGGTAATGCAAGACGATTTTAAAAATGAGAGACCCATGTGGAAGCTCACATGCTA 417
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 408 TAAGCGGGTAATGCAAGACGATTTTAAGAATGAGAGACCCATGTGGAAGCTCACATGCTA 467
Query 418 CGGCCACTGGAAATATTTTCCATGTGATGTTATGGGTGATATCAGCTATGAAGAGCTACG 477
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 468 CGGCCACTGGAAATATTTTCCATGTGATGTTACCGGTGATATCAGCTATGAAGAACTACG 527
Query 478 TGCAATGGCGTACGAAGAGGCTAAACGAGGGATACCTCTACAGTCGATTGTTGAGAGGGA 537
|||| |||| || ||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 528 TGCAGTGGCATATGAAGAAGCTAAACGAGGAATACCTCTACAGTCGATTGTTGAAAGGGA 587
Query 538 GAGGAATCTGCAAAACTCCAAAATAGCTGAGTTTGAAAACTTTCTGCGGAATCCATACAA 597
||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 588 GAGGAATCTGCAAAATTCCAAAATAGCCGAGTTTGAAAACTTTCTACGGAATCCATACAA 647
Query 598 AGGCTCTGTTACCGCCAATCAAAACCCGTTTGCTGCAACCACTCCTAGTATCTTCCCACC 657
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 648 AGGCTCTGTTACCGCCAATCAAAGCCCGTTTGCTGCAACCACTCCTAGTATCTTCCCTCA 707
Query 658 GACTGGTCAGATCAATTCCTCTCCTCCAGGATTCTCTGGCTTTAATCAACAAACTGCATT 717
| | |||||||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 708 GTCCAGTCAGATCAATTCCCCTTCTCCAGCATTCTCTGGCTTTAATCAACAAACTGCATT 767
Query 718 CCCCAATACCAATACTGGTGGACTCAGTTCATCTGGACCTCCGAATGCCTTTGCAAGCTT 777
| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CTCCAATACCAATGCGGGTGGACTCAGTTCATCTGGACCTCCGAATGCCTTTGCAAG--- 824
Query 778 CAATCAACAATCAAATAATCAACAAACTACCTTCCCCAATACCAATGCTGGTGGAGTTAG 837
| | || |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 825 C--T------TC----AATCAACAAACTACATTCCCCAATACCAATGCTGGTGGAGTCAG 872
Query 838 TTCATCTGGACCTCCGAATCCCTTTGCAAGCTTTAATCAACAATCGAATAATCAACAAAC 897
|||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 873 TTCATCTGGACCTCCGAACCCCTTTGCAAGCTTTACTCAACAATCAAATAATCAACAAAC 932
Query 898 TGCATTCCCCAATACCAATGCTGGTGGACTCAGTTCATCAGGACCTCCGAATGCCTTTGC 957
||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 933 TGCATTCTCCAATACCAACGCTGGTGGTCTCAGTTCATCTGGACCTCCGAATGCCTTTGC 992
Query 958 AAGCTTTAATAAACAACCAAATGCTTTCAGCGTCAACACTCCTCAACCTGTTCCTTCAGG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 AAGCTTTAATAAACAACCAAATGCTTTCAGCGTCAACACTCCTCAACCTGTTCCTTCAGG 1052
Query 1018 TCCCTCTGGTTTCCAAACCCATCCATCAACAACATTCAAACCAGCATCATTTGGACCTGG 1077
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 TCCCTCTGGTTTCCAAACCAATCCATCAACAACATTCAAACCAGCATCATTTGGACCTGG 1112
Query 1078 ACCTGGGCTCGCCACAACTCCACAAAACAATAACATCTTTGGTCCATCAACTCCAACGCC 1137
||| || | |||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1113 ACCCGGATTTGCCACAACTCCACAAAACAATAACATCTTTGGTCAATCAACTCCAACACC 1172
Query 1138 GGCTCCCAACACTTCCCAGAACAATCAGACCGCATTCAACTTCAATGTCCCTGTTGCATC 1197
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 GGCTACAAACACTTCCCAGAACAATCAGACCGCATTCAACTTCAATGTCCCTGTTGCATC 1232
Query 1198 TTTCACTGCCCCTGCTGTAGACACAACAAATACATCTTCCGGAAACGAGCTGCAAATAGG 1257
||| ||||| |||||| || |||| ||||||||||||||||||| |||||||||||||||
Sbjct 1233 TTTTACTGCTCCTGCTATAAACACGACAAATACATCTTCCGGAACCGAGCTGCAAATAGG 1292
Query 1258 TG---ATCCTGTTGATAGTAGCATCTGGTTAAAGGAGAAATGGAATCCAGGGGAGATCCC 1314
|| |||||||||||||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct 1293 TGGTGATCCTGTTGATAGTAGTATCTGGCTAAAGGAGAAATGGAATCCAGGGGAGATTCC 1352
Query 1315 GGAGCAAGCGCCGCCTGATGCCTTTGTTTAACAATATGAA-AAGAGTCATTGAAACAATT 1373
||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1353 GGAACAAGCGCCGCCTGATGCCTTTGTTTAACAATATGAAGAAT-GTCATTGAAACAATT 1411
Query 1374 ACGTATAGGCTA-ATGTCTCAAATTGGCGCAGAA-ACGTTGttttttttttGTCATTAAC 1431
|||||||||| | | ||| ||||||||||||||| | |||||||||| || ||||| |
Sbjct 1412 ACGTATAGGCCAGA-GTCGCAAATTGGCGCAGAAGA-GTTGTTTTTTCTTGGTCAT---C 1466
Query 1432 ACAGATTTGTGACCAATGTAGTGTCTCCACAAAATGCAAAGTTT-GAACTTTAACAATAA 1490
||||||||||||||||||||| |||||||||||| |||||||| |||| ||||||||||
Sbjct 1467 TCAGATTTGTGACCAATGTAGTTTCTCCACAAAATCCAAAGTTTTGAACCTTAACAATAA 1526
Query 1491 TTTCAATGCAGATAACAGAAACTGTAA 1517
||||||||||||||||||||||| |||
Sbjct 1527 TTTCAATGCAGATAACAGAAACTATAA 1553
Score = 135 bits (73), Expect = 9e-31
Identities = 87/94 (93%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 700 TAATCAACAAACTGCATTCCCCAATACCAATACTGGTGGACTCAGTTCATCTGGACCTCC 759
||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||
Sbjct 921 TAATCAACAAACTGCATTCTCCAATACCAACGCTGGTGGTCTCAGTTCATCTGGACCTCC 980
Query 760 GAATGCCTTTGCAAGCTTCAATCAACAATCAAAT 793
|||||||||||||||||| ||| ||||| |||||
Sbjct 981 GAATGCCTTTGCAAGCTTTAATAAACAACCAAAT 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74849012595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5