BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476681
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75360.1 | Symbols: | unknown protein; Has 74 Blast hits to... 1042 0.0
> AT1G75360.1 | Symbols: | unknown protein; Has 74 Blast hits
to 71 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa
- 4; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes
- 12 (source: NCBI BLink). | chr1:28274588-28275990 FORWARD
LENGTH=1403
Length=1403
Score = 1042 bits (564), Expect = 0.0
Identities = 812/926 (88%), Gaps = 40/926 (4%)
Strand=Plus/Plus
Query 400 AAAAACAGAGCGAGTaaaaa-aaaaaGAATGGTGAAGCCGTTCGAATTCCATGGCGTGGA 458
|||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 470 AAAAACAGAGCGCGTAAAAACCAAAA-AATGGAGAAGCCGTTCGAATTCCATGGCGTGGA 528
Query 459 GGCGGAGAAAGCGGAAGCAATGAGGAGATACAACAACCGTAGAAGCTTCAGAAACATTAT 518
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct 529 GGCGGAGAAAGCGGAAGCGATGAGGAGATACAACAACCGTAGAAGCTTCAGAGGCATTCT 588
Query 519 ACGTTTAGCCGCCGTAGCTTCGCTGTGTTACTTATGGTTCCCGACGGTGGCGATT-TCAC 577
||||||| || |||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 589 TCGTTTAGTCGGCGTAGCTTTTCTGTGTTACTTATGGTTCCCGACGGTGGCGATTAT-AC 647
Query 578 TACAAACTGCCGGCGACTGGTTTTACCGGACCGGAGCGGTTTTTATAACCGATCGTTCCG 637
||||||| | |||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct 648 TACAAACCGTCGGCGACTGGATTTATTGGACCGGAGCGGTTTTAATAACCGATCGTTCCG 707
Query 638 TCGTCTTCGTCTTCGCTAACCTAATCGTCGGTTT-ACTTTTCTTTCTCTCCGGCGAGAGC 696
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 708 TCGTCTTTTTCTTCGCTAACCTAATCGTCGGTTTGA-TTTTCTTTCTCTCCGGCGAGAGT 766
Query 697 AACAACGAGAGTAGTAGTAGTAGTAATGTTGAACCAGAACCAGATCTCTACGATCAATAC 756
|||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 767 AACAAC--GAG-AGTAGTAGTAGTAATGTCGAAACAGAACCAGATCTCTACGATCAATAC 823
Query 757 ACCTCTTCTTCCTCCGCCGTAATCGTAACCGCCGACGACGAGAAAGTGGTAGAAGATGAT 816
|||||||||| |||| |||| |||| || |||| || || |||||| | ||||||
Sbjct 824 ACCTCTTCTTTCTCCACCGTGATCGCAAACGCCTCCGCCGCGAAAGT--T----GATGAT 877
Query 817 GATGATGATTTGCATAAGCAAATCGTTCCGGCGTTTAACGCGGAGGTTGAGGAGGCGGTT 876
| |||||| | | ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 878 -A--ATGATTCGAACAAGCAAATCGTTCCGACGTTTAACGCGGAGGTTGATGAGGCGGTT 934
Query 877 ACGACAAAA-GAAATTTATAGGAGGACGAAATCGGAGACATTCCGGCCGGTGATGGAGTA 935
| ||||||| | ||||| ||||||||| |||||||||| || |||||||| ||||||||
Sbjct 935 AAGACAAAACG-AATTTCTAGGAGGACTAAATCGGAGATATGCCGGCCGGCAATGGAGTA 993
Query 936 TCAGAGAACAGAGTCGGAGAAAGTGGTGGAAGACGATGAATCGGAGAAGCGAATCGTTCC 995
| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 994 TGAGAGAACGGAGTCGGAGAAAGTGGTGGAAGACGATGAATCGGAGAAGCAAATCGTTCC 1053
Query 996 GGCGT-TTAATCCG-GAGGATGA-G-G-AAGTGGTTTTGGATGAGGCTACTCGGGAGGTG 1050
||||| || ||| |||||||| | | ||||||| |||||||||||| ||||||| ||
Sbjct 1054 GGCGTATT--TCCCAGAGGATGATGAGGAAGTGGTAGTGGATGAGGCTAATCGGGAGATG 1111
Query 1051 GTTACATCACCGGGAATTTATAGGAGGACGAAATCGGAAACGAGGAAAGAGATGATCCGG 1110
|||||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct 1112 GTTACAACACCGGGAATTTATAGGAGGACGAAATCGGAGACGAAGAAAGAGATAATCCGG 1171
Query 1111 CCGGTGGTGGAGCAT-CGGAGAACGGAATCGGCGAAAGTGGTGGCGATAGATAGGCTGAG 1169
|||||| | ||| || |||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1172 CCGGTGATAGAG-ATTCGGAGAACGGAATCGGCGAAAGAGGTGCCGATAGATAGGCTGAG 1230
Query 1170 TAGTGAAGAGTTTCGTTTGAAGATAGAGAGTTTCAT-AATG-G-AGAAGAAGAGATCGCT 1226
||||||||||||||||||| | ||||||||||| | || | ||||||||||| | |
Sbjct 1231 TAGTGAAGAGTTTCGTTTGGTGGTAGAGAGTTTCTTGAAAACGCAGAAGAAGAGAGCACG 1290
Query 1227 TG-TTCGGGAAAACGACATCGTTCAATGTCAAGTACTTGGGTCTAGACCTGGCCTCGTTG 1285
|| ||||| ||||||||| ||||| |||||| |||||||| ||||||||||||||| |||
Sbjct 1291 TGATTCGG-AAAACGACACCGTTCGATGTCATGTACTTGGATCTAGACCTGGCCTCATTG 1349
Query 1286 GTAGTACTGGCTATGGCTCGTGCTAG 1311
|| | | ||||||||||||||||
Sbjct 1350 GT-G----G-CTATGGCTCGTGCTAG 1369
Score = 287 bits (155), Expect = 2e-76
Identities = 334/409 (82%), Gaps = 57/409 (14%)
Strand=Plus/Plus
Query 1 AAACTAATCATTGTTTTCATA-GACAGGGGAGACAAAACTTTTTAAGATCAAAGTATTCT 59
||||||||||||||||||||| || | | |||||||||| || | |||||||||||
Sbjct 1 AAACTAATCATTGTTTTCATAGGA-A-GAGAGACAAAAC-----AA-A-CAAAGTATTCT 51
Query 60 CTAGGTTCTTTTCTAAATTTT-AATACTAAAGAAAACC--AA-AA-TATTGTTAT-TGGT 113
||||||||||||||||||||| |||||||||||||||| || || ||| ||| | ||
Sbjct 52 CTAGGTTCTTTTCTAAATTTTGAATACTAAAGAAAACCAAAAGAACCATTACTATAT-GT 110
Query 114 TCGGT-GT-CCA-CA-TAATT--ATAT--aaaaa--aaaa--a-a--a-aaaCA-T-AA- 154
| || | | || | || | | ||||| |||| | | | ||| | | ||
Sbjct 111 T-TGTACTATTATCATTGGTTGGGTGTCCAAAAAGCAAAACCATAGTATAAA-ATTAAAT 168
Query 155 CG--AAAAAAGAGTCATTAAATTTTAACTTATTGAGGATATATAAAAAGACCAGTGCTGT 212
| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 169 TGTCAAAAAAGAGTCATTAAATTTTAACTTATTGAGGATATATAAAAAGACTAGTCCTGC 228
Query 213 GATCGTATTTCCGTATCAGTGTGTCAGTGTA------TC-T-C------ATATTTTCTCT 258
|||||||||||||||||| ||||||||||| || | | |||||||||||
Sbjct 229 GATCGTATTTCCGTATCA--GTGTCAGTGTATCTCCTTCTTACAATAAAATATTTTCTCT 286
Query 259 CATTTAACAAAATCGCTTCACTTTCCCGATTCAATTTTCCCGGAAAATATCACTTTCCCG 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 CATTTAACAAAATCGCTTCACTTTCCCGATTCAATTTTCCCGGAAAATATCACTTTCCCG 346
Query 319 TTTCATTTTCCCAGAATAAATCAAAATCTCCATCGTAATTAATTTCTCA 367
||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct 347 TTTCATTTTCCCAGAATAA-TCCAAATCTCCATCGTAATCAATTTCTCA 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5