BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476684
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75380.1 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in ... 1842 0.0
AT1G19660.1 | Symbols: | Wound-responsive family protein | chr... 928 0.0
> AT1G75380.1 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in
basal defense response 1 | chr1:28281389-28284045 REVERSE
LENGTH=1550
Length=1550
Score = 1842 bits (997), Expect = 0.0
Identities = 1104/1156 (96%), Gaps = 5/1156 (0%)
Strand=Plus/Plus
Query 1 tctctcaagtgaagaatctctctctatctctatcttcttccattgatcctttcctctctt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TCTCTCAAGTGAAGAATCTCTCTCTATCTCTATCTTCTTCCATTGATCCTTTCCTCTCTC 62
Query 61 TGGCTTGTGTCGGAGCTCTTCGATCTTCTTCTTGATCGATCTACGTGCGACTGTTTGTAC 120
|||||||| || |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 63 TGGCTTGTTTCAGAGCTCTTCGATCTTCTTCTTGATCGATCTACGTGCCACTGTTTATAC 122
Query 121 CATTCACGATCTATTCCGATTCCAATTGTTGCTTACTAAA-AGAAAGAAAGATGAAATCG 179
||||||||||||| |||| || ||||| || || || ||| | ||| ||||||| ||||
Sbjct 123 CATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATCG-AAGGAAGATGAGATCG 181
Query 180 CTTCAAGCACCAGTTGTTTGTCCTGCAATTCGTCCAAGACAAGTAGGTGCATGTGCTTCA 239
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 182 GTTCAAGCACCAGTTGTTTGTCCTGCAATTCGACCAAGACAAGTAGGTGCATGTGCTTCA 241
Query 240 CTTGTTAACTACACTGGTCTGAAACCTAGAAGACAATTCTGGGGTAATCGGACAAAAGGT 299
|| || |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 242 CTAGTCAACTACACTGGTCTGAAACCTAGAAGCCAATTTTGGGGTAATCGGACAAAAGGT 301
Query 300 TTCAAGTCTCAGGG--C-ACCACCACAATCACTCTTAGATTGTGCGACAAGAGTATCAAG 356
||||||||||||| | ||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 302 GTCAAGTCTCAGGGCACTACCACAACAATCACTCTTAGATTGTGCAACAAGAGTATCAAG 361
Query 357 TGTGTTTTCAGCTCTCACTCTGATGGTAATGGAAGCACTGCAGAGAATTTTAATGAGAAT 416
||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||
Sbjct 362 TGTGTTTTCAGCTCTCACTCTGATGGTAATGGAAGCACTGCTGAAAATTTCAATGAAAAT 421
Query 417 GATGAGGAATATGTTAACTCTAGTGTAGTGGAAGCTGTTGAAGTAAAAAGTGGAGCAGAT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GATGAGGAATATGTTAACTCTAGTGTAGTGGAAGCTGTTGAAGTAAAAAGTGGAGCAGAT 481
Query 477 GGTTTCATGGTGAAGATGAGGGATGGTAGACAACTACGATGTGTCCATAACAATCCTCAA 536
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 482 GGTTTTATGGTGAAGATGAGGGATGGTAGGCAACTACGATGTGTCCATAACAATCCTCAA 541
Query 537 GGAGGGCATTTACCAGATTATGCTCCTCACCCTGCTATTGTGTTGAAAATGGAAGATGGA 596
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 542 GGAGGGCATTTACCAGATTATGCTCCACACCCTGCTATTGTCTTGAAAATGGAAGATGGA 601
Query 597 ACTGGTCTTCTCCTTCCCATTATCGTGTTGGAGATGCCTAGTGTGTTACTTATGGCAGCA 656
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 602 ACTGGTCTTCTCCTTCCGATTATCGTCTTGGAGATGCCTAGTGTGTTACTTATGGCAGCA 661
Query 657 ATGACCAATGTCCAAATTGCAAGACCCACCATGTATCAAGTGGTGAAGGAGATGGTGGAC 716
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 662 ATGACCAATGTCCAAATTGCAAGACCAACCATGTATCAAGTGGTGAAGGAAATGGTGGAC 721
Query 717 AAGATGGGTTATGAAGTTAGACTTGTTAGAGTCACCAAAAGAGTTCACGAGGCGTATTTT 776
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 722 AAGATGGGTTACGAAGTTAGACTTGTTAGAGTCACCAAAAGAGTTCACGAGGCATATTTT 781
Query 777 GCCCAGTTATACCTTTCAAAGGTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGG 836
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GCCCAGTTATTCCTTTCAAAGGTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGG 841
Query 837 CCTTCAGATGCAATCAATATCGCTGTTAGATGCAAGATACCTATCCAAGTGAACAAGTAC 896
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 842 CCTTCAGATGCAATCAATATAGCTGTTAGATGCAAGATACCTATCCAAGTGAACAAGTAC 901
Query 897 CTTGCATATAGTGATGGAATGAGAGTCATTGAGTCTGGGAAGATATCAACGCCGACACCA 956
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 902 CTTGCATATAGTGATGGAATGAGAGTCATTGAGTCAGGGAAGATATCAACACCGGCACCA 961
Query 957 GCTTCAGATGGTTTATTATTTACTGAACAAGACCGACCTAATGGTCAGGCTTGTCTTGAT 1016
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 962 GCTTCAGATGGTTTATTATTTACTGAACAAGACCGACCAAATGGTCAGGCTTGTCTTGAT 1021
Query 1017 ACGAAAGAGTTCAATATTTTGAGCAAAATGATGCAAGCTGTTGATGAAGAGCGATATGAT 1076
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1022 ACGAAAGAGTTCAATATTTTGAGCAAAATGATGCAAGCCGTTGATGAAGAGCGATATGAT 1081
Query 1077 GAAGCCGCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAGCGTAACCTGAGGAAA 1136
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1082 GAAGCCGCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGAAA 1141
Query 1137 TACACATGAGAGAGGT 1152
||||||||||||||||
Sbjct 1142 TACACATGAGAGAGGT 1157
Score = 327 bits (177), Expect = 1e-88
Identities = 226/247 (91%), Gaps = 14/247 (6%)
Strand=Plus/Plus
Query 1152 TCGATCAACAATTATTGGCTGTGTACAT-AATTAAGAAG-AAGTCATTGGTCGGAATCAA 1209
|||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| |
Sbjct 1232 TCGATCAACAATTATTGGCTGTGTACATAAACTAAGAAGAAAGTCATTGGTCGGAATC-A 1290
Query 1210 AAGTGGAGGAAGAAGCCTGAAGTGTCGTCTCTGTATGATGGAGATCGGAGAATGCTTCTG 1269
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1291 AAGTGGAGGAAGAAGCCTGAAGTGTCGTCTCTGTATGATGGAGATCGAAGAATGCTTCTG 1350
Query 1270 CACTTTACCCATTTCCCaaaaaaa-aaacaaaaaaaaaTTGTATAA---A-GCATGTAGC 1324
||||||||||||||||| |||||| |||||||||||||| |||||| | | |||||||
Sbjct 1351 CACTTTACCCATTTCCCTAAAAAATAAACAAAAAAAAAT-GTATAATGTATGTATGTAGC 1409
Query 1325 GTGATGTGTACATATTATATTACTTATTACATTATGCAAATTAAGCTCACTCTAATTAAT 1384
||||||||||||||||| ||| ||| | | | ||||||||||||||||||||||||| |
Sbjct 1410 GTGATGTGTACATATTAC-TTA-TTAAT-C-T-ATGCAAATTAAGCTCACTCTAATTACT 1464
Query 1385 TTTAAGT 1391
|||||||
Sbjct 1465 TTTAAGT 1471
> AT1G19660.1 | Symbols: | Wound-responsive family protein | chr1:6799981-6802685
REVERSE LENGTH=1412
Length=1412
Score = 928 bits (502), Expect = 0.0
Identities = 841/1002 (84%), Gaps = 33/1002 (3%)
Strand=Plus/Plus
Query 168 AAGATGAAATCGCTTCAAGCACCAGTTGTTTGTCCT-GCAATTCGTCCAAGACAAGTAGG 226
||||||| |||||||||||||| |||||||| ||| | ||||||| |||||| | ||
Sbjct 129 AAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAG-TGTTCGTCCCAGACAATTGGG 187
Query 227 TG-CATGTGCTTCACTTGTTAACTACACTGGTCT-G-AAAC-------CT-AGAAGACAA 275
|| | | ||||| |||||| |||| | || || | | |||| || |||| ||||
Sbjct 188 TGTC-TCTGCTTTACTTGTCAACTGCTCT-GTTTCGAAAACTAGGAGTCTCAGAAAACAA 245
Query 276 TTCTGGGGTAATCGGA-CAAAAGGTTTCAAGTCTCAGGGC-ACCACCA--CAATC-AC-T 329
||||||||||| | || ||||| | ||||||||| ||| | | || |||| | |
Sbjct 246 TTCTGGGGTAACCAGACCAAAA-ATGACAAGTCTCA-GGCTGCTA-CAGTGAATCTTCGT 302
Query 330 CT-TAGATT--GTGCG-ACAAGAGTATCAAGTGTGTTTTCAGCTCTCACTCTGATGGTAA 385
|| | || | | | | ||||||||||| ||| |||||||||| |||||||||||||
Sbjct 303 CTGCATCTTCGGAG-GTATAAGAGTATCAAATGTCTTTTCAGCTCGCACTCTGATGGTAC 361
Query 386 TGGAAGCACTGCAGAGAATTTTAATGAGAATGATGAGGAATATGTTAACTCTAGTGTAGT 445
|||||||| ||||||||||| || ||||| |||||||| ||||| || ||||||||| |
Sbjct 362 CGGAAGCACAGCAGAGAATTTCAACGAGAACGATGAGGATTATGTCAAGTCTAGTGTATT 421
Query 446 GGAAGCTGTTGAAGTAAAAAGTGGAGCAGATGGTTTCATGGTGAAGATGAGGGATGGTAG 505
|||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||
Sbjct 422 GGAAGCTGTTGAGGTAAAAAGTGGACCAGATGGTTTCATGGTGAAGATGAAGGATGGGAG 481
Query 506 ACAACTACGATGTGTCCATAACAATCCTCAAGGAGGGCAT-TTACCAGATTATGCTCCTC 564
||||| ||||||||||| || ||||||||||||||| || || ||| |||||||||| |
Sbjct 482 GCAACTTCGATGTGTCCACAATAATCCTCAAGGAGGGAATCTT-CCAAATTATGCTCCAC 540
Query 565 ACCCTGCTATTGTGTTGAAAATGGAAGATGGAACTGGTCTTCTCCTTCCCATTATCGTGT 624
| |||| |||||| |||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 541 ATTCTGCAATTGTGCTGAAAATGGAAGATGGAACTGGTCTTCTTCTCCCCATTATCGTCT 600
Query 625 TGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACCAATGTCCAAATTGCAAGACCCA 684
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct 601 TGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAAATGTTCAAATAGCAAGGCCCA 660
Query 685 CCATGTATCAAGTGGTGAAGGAGATGGTGGACAAGATGGGTTATGAAGTTAGACTTGTTA 744
| |||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||
Sbjct 661 CTATGTATCAAGTGGTGAAGGACATGGTAGACAAAATGGGTTATGAGGTTAGGCTTGTTA 720
Query 745 GAGTCACCAAAAGAGTTCACGAGGCGTATTTTGCCCAGTTATACCTTTCAAAGGTGGGTA 804
|||| |||| ||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 721 GAGTTACCACAAGAGTTCACGAGGCATATTTCGCAGAGTTATACCTTTCAAAGGTGGGGG 780
Query 805 ATGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGATGCAATCAATATCGCTGTTA 864
|| ||||| ||||||||||| |||||| | ||||| |||||||| ||||| |||||||
Sbjct 781 ATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCAATTAATATAGCTGTTA 840
Query 865 GATGCAAGATACCTATCCAAGTGAACAAGTACCTTGCATATAGTGATGGAATGAGAGTCA 924
|||||||| ||||||| ||||| |||||||| || || ||||||||||||||||||||||
Sbjct 841 GATGCAAGGTACCTATTCAAGTCAACAAGTATCTAGCTTATAGTGATGGAATGAGAGTCA 900
Query 925 TTGAGTCTGGGAAGATATCAACGCCGACACCAGCTTCAGATGGTTTATTATTTACTGAAC 984
| || || || ||| |||||| || ||||| ||||| ||||||||||| ||||||||||
Sbjct 901 TCGATTCCGGAAAGCTATCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAAC 960
Query 985 AAGACCGACCTAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAAAA 1044
|||||| || ||||||||| ||||| ||||||| ||||||||| || | | || || |
Sbjct 961 TAGACCGGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGTAAGGAACA 1020
Query 1045 TGATGCAAGCTGTTGATGAAGAGCGATATGATGAAGCCGCTGAGTGGAGAGACAAGCTTG 1104
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1021 TGATGCAAGCTGTTGATGAAGAACGGTATGATGAAGCCGCTGAGTGGAGAGACAAGCTTG 1080
Query 1105 GTCA-GTTTCGGGCCAAGCGTAACCTGAGGAAATACACATGA 1145
| || ||||| ||| || || || | |||||||||||||||
Sbjct 1081 G-CAAGTTTCAGGCAAAACGCAAATTAAGGAAATACACATGA 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70531765725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5