BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476698
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75490.1 | Symbols: | Integrase-type DNA-binding superfamil... 1640 0.0
> AT1G75490.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:28335502-28336706 FORWARD LENGTH=1205
Length=1205
Score = 1640 bits (888), Expect = 0.0
Identities = 977/1019 (96%), Gaps = 9/1019 (1%)
Strand=Plus/Plus
Query 1 AATTCATAGTGATAAATCTTTTTATATTTCCCCAATCGCGTATGACCTTATCCATAtctc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 178 AATTCATAGTGATAAATCTTTTTATATTTCCCCAATCGCGGATGACCTTATCCATATCTC 237
Query 61 tctctctc--gt-ttttaatttttgg-aaaatctcaaactcatctctctctctctGCTGG 116
|||||||| | |||| ||||||| ||||||||||||||| || ||||||||||||
Sbjct 238 TCTCTCTCTTTTCTTTTTTTTTTTGGAAAAATCTCAAACTCA--TCAATCTCTCTGCTGG 295
Query 117 TTTTACGATTACTGTTGCCAAAAAGAGAAGGGTCTCTCGAGACAAGTGTTAAAATTACAA 176
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 296 TTTTACGATTACTGTTGCCAAAAAAAGAAGGGTCTCTCGAGACAAGTGTTAGGATTACAA 355
Query 177 ACACAACACCAGCTTCCTTCTCTCGACACGACCCTCCGTCATGTCTGCGCCAGCTATATC 236
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ACACAACACCAGCTTCCTCCTCTCGACACGACCCTCCGTCATGTCTGCGCCAGCTATATC 415
Query 237 TTCTCCTCGCCACGTTTCATCACTCTCTTCTAGTATATATACACACCTACCCATTACCTC 296
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 416 TTCTCCTCGCCACGTTTCATCACTCTCTTCTAGTATATATACACACCTAACCATTACCTC 475
Query 297 ATGTCTTTGCCTTATCACTCACCAAAAGTCGTCACATAACATCACTTTCGAGTTGTCAAC 356
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 476 ATGTCTTTGCCTTATCACTCACCAAAAGTCGTCACATAATATCACTTTCGAGTTATCAAC 535
Query 357 ATCCGTACATGTCATCCATAGAGCCAAAAGTAATGATGGTTGGTGCTAATAAGAAACAAC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ATCCGTACATGTCATCCATAGAGCCAAAAGTAATGATGGTTGGTGCTAATAAGAAACAAC 595
Query 417 GAACCGTTCAAGCTAGTTCGAGGAAAGGCTGTATGAGAGGAAAAGGTGGCCCCGATAACG 476
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 596 GAACCGTCCAAGCTAGTTCGAGGAAAGGTTGTATGAGAGGAAAAGGTGGACCCGATAACG 655
Query 477 CCTCTTGCACCTACAAAGGTGTTAGACAACGCACTTGGGGCAAATGGGTCGCTGAGATCC 536
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CGTCTTGCACTTACAAAGGTGTTAGACAACGCACTTGGGGCAAATGGGTCGCTGAGATCC 715
Query 537 GTGAGCCTAACCGAGGAGCTCGTCTTTGGCTAGGTACCTTCGACACCTCCCGCGAAGCTG 596
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 716 GCGAGCCTAACCGAGGAGCTCGTCTTTGGCTCGGTACCTTCGACACCTCCCGTGAAGCTG 775
Query 597 CCTTGGCTTATGATTCCGCAGCTCGTAAGCTCTATGGGCCCGAGGCTCACCTCAACCTCC 656
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 776 CCTTGGCTTATGACTCCGCAGCTCGTAAGCTCTATGGGCCTGAGGCTCATCTCAACCTCC 835
Query 657 CTGAGTCCTTAAGAAGTTACCCTGAAACGGCGTCGTCTCAGGCGTCCCATACGACACCAA 716
||||||||||||||||||||||| ||||||||||||||| ||||||||| || |||||||
Sbjct 836 CTGAGTCCTTAAGAAGTTACCCTAAAACGGCGTCGTCTCCGGCGTCCCAGACTACACCAA 895
Query 717 GCAGCAACACCGGTGG-AAAA--AGCAGCGACTCTGAGTCGCCGTGTTCATCCAACGAGA 773
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 896 GCAGCAACACCGGTGGAAAAAGCAGCAGCGACTCTGAGTCGCCGTGTTCATCCAACGAGA 955
Query 774 TGTCATCATGTGGAAGAGTGACAGACGAGATCTCATGGGAGCATATAAACGTGGATTTGC 833
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 956 TGTCATCATGTGGAAGAGTGACAGAGGAGATATCATGGGAGCATATAAACGTGGATTTGC 1015
Query 834 CGGTAATGGATGATTCTTCTATATGGGAAGAAGCTACAATGTCGTTAGGGTTTCCATGGG 893
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1016 CGGTAATGGATGATTCTTCAATATGGGAAGAAGCTACAATGTCGTTAGGATTTCCATGGG 1075
Query 894 TTCATGAAGGAGATAATGATATTTCTCGGTTTGATACTTGTATTTCCGGTGGCTATTCTA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTCATGAAGGAGATAATGATATTTCTCGGTTTGATACTTGTATTTCCGGTGGCTATTCTA 1135
Query 954 ATTGGGATTCCTTTCATTCCCCACTTTGAGGTGTCACTAGACTCTCTTTAATTATTAAG 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1136 ATTGGGATTCCTTTCATTCCCCACTTTGAGGTGTCACTAGACTCTCTTTAATTGTTAAG 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49581103089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5