BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476699
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75500.1 | Symbols: WAT1 | Walls Are Thin 1 | chr1:28337785-... 2654 0.0
> AT1G75500.1 | Symbols: WAT1 | Walls Are Thin 1 | chr1:28337785-28340241
REVERSE LENGTH=1817
Length=1817
Score = 2654 bits (1437), Expect = 0.0
Identities = 1647/1743 (94%), Gaps = 35/1743 (2%)
Strand=Plus/Plus
Query 1 TGGTGGTTCCCACAAGCAAAGAGAGGAATGAGATAGCTATCTACCTATATTTATATCTCC 60
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 2 TGGTGGTTCCCACAAGCAAAGAGGGGAATGAGATTGCTATCTACCTATATTTATATCTCC 61
Query 61 ACAACTTCACTCTTTTCCTCAATCAacacacacaaacatacacacacaGCA-CC-TTCTC 118
||||||||||||||||||||||||||||||||||||| ||||||||| || || || ||
Sbjct 62 GCAACTTCACTCTTTTCCTCAATCAACACACACAAACACACACACACA-CAGCCTTTTTC 120
Query 119 CATCGTTTGATAGATTGTTTAGTTCGATCCAATGGCGGATAACACCGGAAACGATAATCG 178
| ||| ||||| ||||||| || ||||||||||||||||||||| | |||||||||
Sbjct 121 CTTCG-TTGATCGATTGTTAAGCTCGATCCAATGGCGGATAACA-C-----CGATAATCG 173
Query 179 GAGATCGTTATGGGGAGTTCCGGAGAAGCTTCAGCTTCACATAGCGATGCTGACGTTGCA 238
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GAGATCCTTATGGGGAGTTCCGGAGAAGCTTCAGCTTCACATAGCGATGCTGACGTTGCA 233
Query 239 ATTCGGTTACGCCGGATTCCACGTGGTGTCTCGAGCTGCTCTTAACATGGGAATCAGCAA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 ATTCGGTTACGCCGGATTCCACGTGGTGTCTCGAGCTGCTCTTAACATGGGAATCAGCAA 293
Query 299 ACTCGTCTTCCCTGTTTATCGTAACATCATCGCCTTGCTTCTTCTCCTTCCATTCGCTTA 358
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 294 ACTCGTCTTCCCTGTTTATCGTAACATCATCGCCTTGCTTCTTCTCCTTCCCTTCGCTTA 353
Query 359 CTTCCTCGAAAAGAAGGAGAGGCCAGCGATTACTCTCAACTTTCTCATCCAGTTCTTCTT 418
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 354 CTTCCTTGAAAAGAAGGAGAGACCAGCGATTACTCTCAACTTTCTCATCCAGTTCTTCTT 413
Query 419 TTTGGCACTCATCGGAATAACAGCGAACCAAGGGTTTTACTTGTTGGGACTGGACAACAC 478
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 414 TTTGGCACTCATAGGAATAACAGCGAACCAAGGATTTTACTTGTTGGGACTGGACAACAC 473
Query 479 TTCACCAACATTTGCTTCTTCCATGCAAAACTCTGTTCCCGCCATTACCTTTCTCATGGC 538
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TTCACCAACATTTGCTTCCTCCATGCAAAACTCTGTTCCCGCCATTACCTTTCTCATGGC 533
Query 539 TGCTCTTCTCAGGATTGAGAAAGTAAGAATAAACAGAAGAGACGGTATCTCCAAAGTCTT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 534 TGCTCTTCTCAGGATTGAGAAAGTAAGAATAAACAGAAGAGACGGTATCTCCAAAATCTT 593
Query 599 AGGAACAGCTCTTTGTGTCGCCGGAGCTTCTGTCATCACTCTCTACAAGGGTCCAACCAT 658
|||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 594 AGGAACAGCTCTTTGTGTCGCCGGAGCTTCCGTCATCACCCTCTATAAAGGTCCAACCAT 653
Query 659 CTACACCCCGACCAGCCACCTCCACACTCATCTACTCACCACAAACTCCGCAGTCTTAAC 718
|||||| ||| | |||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 654 CTACACTCCGGCTAGCCACCTCCACGCTCATCTACTCACCACAAACTCCGCCGTCTTAGC 713
Query 719 GCCTTTAGGAGACGCCGCGCCTAAAAACTGGACCCTTGGTTGTATCTACCTAATCGGTCA 778
||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 714 GCCGCTAGGAAACGCCGCGCCTAAAAACTGGACCCTTGGTTGCATCTACCTAATCGGTCA 773
Query 779 CTGCCTCTCGTGGTCAGGCTGGCTCGTTTTCCAAGCTCCGGTTCTTAAATCTTACCCGGC 838
||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||
Sbjct 774 CTGTCTCTCGTGGTCAGGCTGGCTTGTTTTCCAAGCTCCGGTTCTTAAGTCTTATCCAGC 833
Query 839 GAGGCTCTCGGTTACGTCTTACACTTGTTTCTTCGGGATCATTCAGTTCTTGATCATCGC 898
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 834 GAGGCTCTCGGTTACGTCTTACACTTGTTTCTTCGGAATCATTCAGTTCTTGATCATTGC 893
Query 899 TGCTTTCTGTGAAAGAGAATCTCAGGCGTGGGTTTTTCACTCCGGTTGGGAGCTTTTCAC 958
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 894 TGCTTTCTGTGAAAGAGATTCTCAGGCTTGGGTTTTTCACTCCGGTTGGGAGCTTTTCAC 953
Query 959 CATCCTCTACGCCGGAATCGTAGCGTCTGGAATCGCGTTTGCCGTTCAGATTTGGTGTAT 1018
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 954 CATCCTCTACGCCGGAATCGTAGCGTCTGGAATCGCGTTTGCGGTTCAGATTTGGTGTAT 1013
Query 1019 TGACAGAGGAGGTCCAGTCTTCGTTGCTGTTTACCAACCTGTTCAGACTCTTGTCGTTGC 1078
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1014 TGACAGAGGGGGTCCAGTCTTCGTTGCTGTTTACCAGCCTGTTCAGACTCTTGTCGTTGC 1073
Query 1079 GATCATGGCTTCGATTGCGTTAGGCGAAGAGTTTTACTTGGGCGGGATTATTGGAGCGGT 1138
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1074 GATCATGGCTTCTATTGCGTTAGGCGAAGAATTTTATTTGGGCGGGATTATTGGAGCGGT 1133
Query 1139 CTTGATCATAGCGGGACTTTACTTCGTATTGTACGGTAAGAGCGAAGAGAGGAAATTTGC 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CTTGATCATAGCGGGACTTTACTTCGTATTGTACGGTAAGAGCGAAGAGAGGAAATTTGC 1193
Query 1199 AGCGCTAGAGAAGGCAACAATCCAGTCCTCCGCGGAGCATGGTATCGAACGTGCACCTGT 1258
|||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1194 AGCGCTTGAGAAGGCAGCGATCCAGTCCTCCGCGGAGCATGGTATTGAACGTGCACCTGT 1253
Query 1259 TTCTCGCAACTCCATCAAGTCGTCCATCACAACTCCACTACTCCATCAGTCAACGGACAA 1318
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1254 TTCTCGCAACTCCATCAAGTCGTCCATCACAACACCACTACTCCATCAGTCAACGGACAA 1313
Query 1319 CGTTTGACTAATT-GGACACATCTTTCTCCAGCTAATAATTACAAATGCCATTACCCAAT 1377
||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1314 TGTTTGACTACTTTGGACAAATCACTCTCCAGCTAATAATTACAAATGCCATTACCCAAT 1373
Query 1378 TAAAAGGGAAAAATGGTGTGCCGTTGTGTTTTATGGCTTTTGTGTCTGtttttttttttA 1437
|||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 1374 TAAAAGGGAACAATGGTGTGCCGTTGTGTTTTATGACTTTTGTGTCTGCTTTTTTTCTTA 1433
Query 1438 GTGTTTTCTCT-CTTTTT-------AA----TTATTAATTACCTAAGAAAGGTTTTTGAA 1485
||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 1434 GTGTTTTCTCTTCTTTTTTTTTTCTAAAAAATTATTAATTACCTAAGAAAGGTTTTTGAA 1493
Query 1486 GAAAGGaaaaaaaaaaaaTGGTGGATGAGACATCATTGTTCatgaggatgatgatgatga 1545
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GAAAGGAAAAAAAA----TGGTGGATGAGACATCATTGTTCATGAGGATGATGATGATGA 1549
Query 1546 t-a--gtgatgaACAAGACTATGTGGGAGCTTTGGATTGAGACTTTTCTATATATAATAT 1602
| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 TGATAGTGATGAAGAAGACTATGTGGGAGCTTTGGATTGAGACTTTTCTATATATAATAT 1609
Query 1603 CTGGCTGATATATTAGTGCCAtttttt-t-ACATTTCTTGTGGGGTTTTTCTTTCCTTTT 1660
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1610 CTGGCTGATATATTAGTGCCATTTTTTCTTACATTTCTTGTGGGGTTTTTCTTTCCTTT- 1668
Query 1661 CGATCATCAATAGAATGTTATAATTTGCATTTATGATCTTTAGTAATTATCACTGTCGGG 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 --ATCATCAATAGAATGTTATAATTTGCATTTATGATCTTTAGTAATTATCACTGTCGGG 1726
Query 1721 GAT 1723
|||
Sbjct 1727 GAT 1729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86897143395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5