BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476700 Length=1533 Score E Sequences producing significant alignments: (Bits) Value AT1G75520.1 | Symbols: SRS5 | SHI-related sequence 5 | chr1:283... 2296 0.0 > AT1G75520.1 | Symbols: SRS5 | SHI-related sequence 5 | chr1:28351562-28353495 REVERSE LENGTH=1574 Length=1574 Score = 2296 bits (1243), Expect = 0.0 Identities = 1453/1550 (94%), Gaps = 31/1550 (2%) Strand=Plus/Plus Query 1 AACCGTAGTGAAGTGCCCAAAGCAAAAGATCTTCATGGGACTCTCTATGTCTTAAAAACC 60 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 AACTGTAGTGAAGTGCCCAAAGCAAAAGATCTTCATGGGACTCTCTATGTCTTAAAAA-C 59 Query 61 TTTTTCTCTTTCCctctctctctctTAAATCCACAGAGTAAATCCAGCAAACTTCCACTT 120 ||||| | | || ||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 60 TTTTT-T-TCTCTCTCTCTCTCTCTT-AATCCACCGAGTAAATCCAGCAAACTTCCACTT 116 Query 121 TCAGAGATCAAAATTGTGTTA-CTTAAATGATGAAGAGAGACTAATTCCATGGCGGCGTT 179 |||||||||||| ||| |||| ||||| ||||||||| |||||||||||||||||||||| Sbjct 117 TCAGAGATCAAACTTGAGTTATCTTAAGTGATGAAGAAAGACTAATTCCATGGCGGCGTT 176 Query 180 TGCAGTTTCTTAAGCTTCCGCATCATCTACTC-TCAATTTCTTATTATAGAAAAGAAAAG 238 ||||||||||||||||||| |||||||||| | |||| || | |||||| ||||||||| Sbjct 177 TGCAGTTTCTTAAGCTTCCTCATCATCTAC-CGTCAA--TC-T-TTATAGCAAAGAAAAG 231 Query 239 GGAATCAAATCAAGATTTTCCCTTTTCTTTGATATCTCTTTGTAgtgtgttgtgtgtgtg 298 | |||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||| Sbjct 232 GAAATCAAATCAAGATTTACCCTTTTCTTTGATTTCTCTTTGTGGTGTGTTGGGTGTGTG 291 Query 299 ATGTTGATTATCACTGGGGAAAGAAATGGCAGGGTTCTTCTATCTAGG-GGG-GAG---- 352 |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 292 ATGTTGATTACCACTGGGGAAAGAAATGGCAGGGTTCTTCTATCTAGGAGGGAGAGACAA 351 Query 353 --AGa-caacaacaacaagcaaaatcatcatcaagtagacaaggatcatcatcatcaaga 409 | | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 352 CAACAGCAACAACAACAAGCAAGATCATCATCAAGTAGACAAGGATCATCATCATCAAGA 411 Query 410 caatagcaaTTATCTTTATCTTTACAAAGATGAGATCTATAACAACAACAAGGGTTTCGA 469 ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 412 CAAGAGCAATTATCTTTATCTTTACAAAGACGAGATCTATAATAACAACAAGGGTTTCGA 471 Query 470 GATTTGGCCTCCACAATACTTCcaacaacaagaacatcaacaacaacaacaccaacagcg 529 |||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||| Sbjct 472 GATTTGGCCTCCGCAATACTTCCAACAACAAGAACATCAACAACAAC-A-A-CAACAGCA 528 Query 530 acaacaTGCCTCAGCTCCTGCAAACTTCTACTCATTTGGAATGGTTCCAAGCGGAAGCAG 589 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 529 ACAACATGCCTCAGCTCCTGCAAACTTCTACTCATTTGGAATGGTTCCTAGCGGAAGCAG 588 Query 590 CAGCAACAACAACAATAACCGGAGCAGGAGTTTATACTTCAACGTAGTCTCCGATCATGA 649 ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 589 CAGCAACAACAACAATAACCGTAGCCGGAGTTTATACTTCAACGTAGTCTCCGATCATGA 648 Query 650 GCCGGGAGGGTTCACGGTGACGAGACAAGGAGGTATGAATTGTCAAGATTGTGGGAATCA 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 649 GCCGGGAGGGTTCACGGTGACGAGACAAGGAGGTATGAATTGTCAAGATTGTGGAAATCA 708 Query 710 AGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGTAAAAGCCGAGGCTTTCA 769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 709 AGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGTAAAAGCCGAGGCTTTCA 768 Query 770 TTGTCAAACTCACGTTAAGAGCACTTGGGTTCCTGCTGCTAAACGCCGTGAGCGTCTAGC 829 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 769 TTGTCAAACTCACGTTAAGAGCACTTGGGTTCCTGCTGCTAAACGTCGTGAGCGTTTAGC 828 Query 830 CCAACTCGCTTCCTTGCAGCACCACTCAGCCTCTAGCCGTGAAACGCAAAACGCAAAACG 889 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 829 CCAACTCGCTTCCTTGCAGCACCACTCAGCCTCCAGCCGTGAAACGCAAAACGCCAAACG 888 Query 890 CCTTCGTGAAGCTAGTGGTGGTAATAATGATGATGATAAAGACCATAGTGGTGGTGCTGG 949 |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| Sbjct 889 CCTTCGAGAAGCTAGTGGTGGTGATAATAATGATGATAAAGACCATAGTGGTGGTGGTGG 948 Query 950 ATCGGCTCTTGCTAATACCCGTGTGGTGAATGCTAATTCTAATTCAGGGTTGGAGGTGAG 1009 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 949 ATCGGCTCTTGCTAATACCCGTGTGGTGAATGCTAATTCTAATTCAGGGTTGGAGGTGAG 1008 Query 1010 TCAACACTTACCACCGGAGGTTAACTCACCGGCGGTATTCCGGTGCGTTAAAGTGAGCTC 1069 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 1009 TCAACACTTACCACCGGAGGTTAACTCACCGGCGATATTCCGGTGCGTTAGAGTGAGCTC 1068 Query 1070 AATAGAAGAGGATGAAGATGATCAAGAATATGCTTACCAAACGGCTGTGAACATTGGAGG 1129 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1069 AATAGAAGAGGATGAAGATGATCAAGCATATGCTTACCAAACGGCTGTGAACATTGGAGG 1128 Query 1130 ACATGTCTTCAAAGGCATTCTCTATGACCAAGGACCAGATCAAGATCATAATCATCACCT 1189 ||| |||||||||||||||||||||||||||||||||| || | ||||||||||||| Sbjct 1129 CCATATCTTCAAAGGCATTCTCTATGACCAAGGACCAGAACATCAAGATAATCATCACCT 1188 Query 1190 TAACCTCCTTGCCTCCACTGCAACCACCACCAATGTGGAGGAGACTGCCACGAAGACGGT 1249 |||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 1189 TAACCTACTTGCTTCCACTGCAACCACCACCAATGTGGAGGAGACCGCCACTAAGACTGT 1248 Query 1250 CACCGGTAACAATAATAATGGATTAATGCTTGATCCTTCGTCGCTTTACCCGGCTCAACT 1309 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1249 CACCGGTAACAATAATAATGGATTAATGCTTGATCCTTCTTCGCTTTACCCAGCTCAACT 1308 Query 1310 CAACTCCTTCATCGCCGGTACGCCATTCTTCACACCTCCGAGGTCTTGA---GATTCAGA 1366 ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || Sbjct 1309 CAACTCCTTCATCGCGGGTACGCCATTCTTCACACCTCCGAGGTCTTGATCAGATTCTGA 1368 Query 1367 TATCAGTTATTGATTAT-GTTAATCTTTAAACGTTATAATAATGAGAGGCtttcattttg 1425 ||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||||| Sbjct 1369 TATCAGTTATTGATTATTGTTAATCTTTAAACGTTATAATAATAAGAGGATTTC-TTTTG 1427 Query 1426 ttgttgtttttgtattcgtctt-tgtgtttttgacatttcgtgcaatttg-ATAAAACAC 1483 || |||||||||| ||||| || | | ||||||| | ||||||||||||| | ||||||| Sbjct 1428 TTTTTGTTTTTGTTTTCGT-TTATCTATTTTTGAAACTTCGTGCAATTTGGAAAAAACAC 1486 Query 1484 CCTTAGCTAGGTTGTTACTTAGTGGTGATAAACATGCATCTTGTACGTAC 1533 ||||| ||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 1487 CCTTACCTAGGTTGTTACTTAGTGGTGATTAACATGCATATTGTACGTAC 1536 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75652221315 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5