BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476700
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75520.1 | Symbols: SRS5 | SHI-related sequence 5 | chr1:283... 2296 0.0
> AT1G75520.1 | Symbols: SRS5 | SHI-related sequence 5 | chr1:28351562-28353495
REVERSE LENGTH=1574
Length=1574
Score = 2296 bits (1243), Expect = 0.0
Identities = 1453/1550 (94%), Gaps = 31/1550 (2%)
Strand=Plus/Plus
Query 1 AACCGTAGTGAAGTGCCCAAAGCAAAAGATCTTCATGGGACTCTCTATGTCTTAAAAACC 60
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AACTGTAGTGAAGTGCCCAAAGCAAAAGATCTTCATGGGACTCTCTATGTCTTAAAAA-C 59
Query 61 TTTTTCTCTTTCCctctctctctctTAAATCCACAGAGTAAATCCAGCAAACTTCCACTT 120
||||| | | || ||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 60 TTTTT-T-TCTCTCTCTCTCTCTCTT-AATCCACCGAGTAAATCCAGCAAACTTCCACTT 116
Query 121 TCAGAGATCAAAATTGTGTTA-CTTAAATGATGAAGAGAGACTAATTCCATGGCGGCGTT 179
|||||||||||| ||| |||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct 117 TCAGAGATCAAACTTGAGTTATCTTAAGTGATGAAGAAAGACTAATTCCATGGCGGCGTT 176
Query 180 TGCAGTTTCTTAAGCTTCCGCATCATCTACTC-TCAATTTCTTATTATAGAAAAGAAAAG 238
||||||||||||||||||| |||||||||| | |||| || | |||||| |||||||||
Sbjct 177 TGCAGTTTCTTAAGCTTCCTCATCATCTAC-CGTCAA--TC-T-TTATAGCAAAGAAAAG 231
Query 239 GGAATCAAATCAAGATTTTCCCTTTTCTTTGATATCTCTTTGTAgtgtgttgtgtgtgtg 298
| |||||||||||||||| |||||||||||||| ||||||||| |||||||| |||||||
Sbjct 232 GAAATCAAATCAAGATTTACCCTTTTCTTTGATTTCTCTTTGTGGTGTGTTGGGTGTGTG 291
Query 299 ATGTTGATTATCACTGGGGAAAGAAATGGCAGGGTTCTTCTATCTAGG-GGG-GAG---- 352
|||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 292 ATGTTGATTACCACTGGGGAAAGAAATGGCAGGGTTCTTCTATCTAGGAGGGAGAGACAA 351
Query 353 --AGa-caacaacaacaagcaaaatcatcatcaagtagacaaggatcatcatcatcaaga 409
| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 352 CAACAGCAACAACAACAAGCAAGATCATCATCAAGTAGACAAGGATCATCATCATCAAGA 411
Query 410 caatagcaaTTATCTTTATCTTTACAAAGATGAGATCTATAACAACAACAAGGGTTTCGA 469
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 412 CAAGAGCAATTATCTTTATCTTTACAAAGACGAGATCTATAATAACAACAAGGGTTTCGA 471
Query 470 GATTTGGCCTCCACAATACTTCcaacaacaagaacatcaacaacaacaacaccaacagcg 529
|||||||||||| |||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 472 GATTTGGCCTCCGCAATACTTCCAACAACAAGAACATCAACAACAAC-A-A-CAACAGCA 528
Query 530 acaacaTGCCTCAGCTCCTGCAAACTTCTACTCATTTGGAATGGTTCCAAGCGGAAGCAG 589
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 529 ACAACATGCCTCAGCTCCTGCAAACTTCTACTCATTTGGAATGGTTCCTAGCGGAAGCAG 588
Query 590 CAGCAACAACAACAATAACCGGAGCAGGAGTTTATACTTCAACGTAGTCTCCGATCATGA 649
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 589 CAGCAACAACAACAATAACCGTAGCCGGAGTTTATACTTCAACGTAGTCTCCGATCATGA 648
Query 650 GCCGGGAGGGTTCACGGTGACGAGACAAGGAGGTATGAATTGTCAAGATTGTGGGAATCA 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 649 GCCGGGAGGGTTCACGGTGACGAGACAAGGAGGTATGAATTGTCAAGATTGTGGAAATCA 708
Query 710 AGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGTAAAAGCCGAGGCTTTCA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGTAAAAGCCGAGGCTTTCA 768
Query 770 TTGTCAAACTCACGTTAAGAGCACTTGGGTTCCTGCTGCTAAACGCCGTGAGCGTCTAGC 829
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 769 TTGTCAAACTCACGTTAAGAGCACTTGGGTTCCTGCTGCTAAACGTCGTGAGCGTTTAGC 828
Query 830 CCAACTCGCTTCCTTGCAGCACCACTCAGCCTCTAGCCGTGAAACGCAAAACGCAAAACG 889
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 829 CCAACTCGCTTCCTTGCAGCACCACTCAGCCTCCAGCCGTGAAACGCAAAACGCCAAACG 888
Query 890 CCTTCGTGAAGCTAGTGGTGGTAATAATGATGATGATAAAGACCATAGTGGTGGTGCTGG 949
|||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 889 CCTTCGAGAAGCTAGTGGTGGTGATAATAATGATGATAAAGACCATAGTGGTGGTGGTGG 948
Query 950 ATCGGCTCTTGCTAATACCCGTGTGGTGAATGCTAATTCTAATTCAGGGTTGGAGGTGAG 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 ATCGGCTCTTGCTAATACCCGTGTGGTGAATGCTAATTCTAATTCAGGGTTGGAGGTGAG 1008
Query 1010 TCAACACTTACCACCGGAGGTTAACTCACCGGCGGTATTCCGGTGCGTTAAAGTGAGCTC 1069
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1009 TCAACACTTACCACCGGAGGTTAACTCACCGGCGATATTCCGGTGCGTTAGAGTGAGCTC 1068
Query 1070 AATAGAAGAGGATGAAGATGATCAAGAATATGCTTACCAAACGGCTGTGAACATTGGAGG 1129
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1069 AATAGAAGAGGATGAAGATGATCAAGCATATGCTTACCAAACGGCTGTGAACATTGGAGG 1128
Query 1130 ACATGTCTTCAAAGGCATTCTCTATGACCAAGGACCAGATCAAGATCATAATCATCACCT 1189
||| |||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 1129 CCATATCTTCAAAGGCATTCTCTATGACCAAGGACCAGAACATCAAGATAATCATCACCT 1188
Query 1190 TAACCTCCTTGCCTCCACTGCAACCACCACCAATGTGGAGGAGACTGCCACGAAGACGGT 1249
|||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1189 TAACCTACTTGCTTCCACTGCAACCACCACCAATGTGGAGGAGACCGCCACTAAGACTGT 1248
Query 1250 CACCGGTAACAATAATAATGGATTAATGCTTGATCCTTCGTCGCTTTACCCGGCTCAACT 1309
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1249 CACCGGTAACAATAATAATGGATTAATGCTTGATCCTTCTTCGCTTTACCCAGCTCAACT 1308
Query 1310 CAACTCCTTCATCGCCGGTACGCCATTCTTCACACCTCCGAGGTCTTGA---GATTCAGA 1366
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1309 CAACTCCTTCATCGCGGGTACGCCATTCTTCACACCTCCGAGGTCTTGATCAGATTCTGA 1368
Query 1367 TATCAGTTATTGATTAT-GTTAATCTTTAAACGTTATAATAATGAGAGGCtttcattttg 1425
||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 1369 TATCAGTTATTGATTATTGTTAATCTTTAAACGTTATAATAATAAGAGGATTTC-TTTTG 1427
Query 1426 ttgttgtttttgtattcgtctt-tgtgtttttgacatttcgtgcaatttg-ATAAAACAC 1483
|| |||||||||| ||||| || | | ||||||| | ||||||||||||| | |||||||
Sbjct 1428 TTTTTGTTTTTGTTTTCGT-TTATCTATTTTTGAAACTTCGTGCAATTTGGAAAAAACAC 1486
Query 1484 CCTTAGCTAGGTTGTTACTTAGTGGTGATAAACATGCATCTTGTACGTAC 1533
||||| ||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1487 CCTTACCTAGGTTGTTACTTAGTGGTGATTAACATGCATATTGTACGTAC 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5