BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476701
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75540.1 | Symbols: STH2 | salt tolerance homolog2 | chr1:28... 1552 0.0
> AT1G75540.1 | Symbols: STH2 | salt tolerance homolog2 | chr1:28366027-28367652
FORWARD LENGTH=1282
Length=1282
Score = 1552 bits (840), Expect = 0.0
Identities = 1039/1125 (92%), Gaps = 54/1125 (5%)
Strand=Plus/Plus
Query 1 CGATCGATGAAGATCAGGTGCGACGTCTGCGACAAAGAAGAAGCGTCGGTGTTTTGTACC 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 27 CGATCGATGAAGATCAGGTGCGACGTCTGCGATAAAGAAGAAGCGTCGGTGTTTTGCACG 86
Query 61 GCCGACGAAGCATCTCTCTGCGGCGGCTGCGACCACCAAGTCCACCACGCTAACAAActc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 GCCGACGAAGCATCTCTCTGCGGCGGCTGCGACCACCAAGTCCACCACGCTAACAAACTC 146
Query 121 gcctctaaacatctccgtttctctctcctctatccttcttcttccaacaactcctctcct 180
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 147 GCCTCTAAACATCTCCGTTTCTCTCTCCTTTATCCTTCTTCTTCCAACACCTCCTCTCCT 206
Query 181 ctctGCGACATCTGTCAGGATAAAAAAGCCCTGTTGTTTTGTCAACAAGATAGAGCTATT 240
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 207 CTCTGCGACATCTGTCAGGATAAAAAAGCTCTGTTGTTCTGTCAACAAGATAGAGCTATT 266
Query 241 TTATGCAAAGATTGTGATTCATCGATCCACGCAGCGAACGAACACACAAAGAAACACGAT 300
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 267 TTATGCAAAGATTGCGATTCATCGATCCACGCTGCGAACGAACACACAAAGAAACACGAT 326
Query 301 AGGTTTCTTCTTACAGGGGTTAAGCTCTCTGCTACATCTTCTGTTTACAAACCTACTTC- 359
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 327 AGGTTTCTTCTTACAGGGGTTAAGCTCTCTGCAACATCGTCTGTTTACAAACCTACTTCG 386
Query 360 AGAG-T-CTTCTTCTTC---AAGCAACCAAGATCTCTCTGTTCCTGGATCATCAATCTCT 414
| | | |||||||||| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 387 AAATCTTCTTCTTCTTCTTCAAGCAACCAAGATTTCTCTGTCCCTGGATCATCAATCTCT 446
Query 415 AATC-T--TCCTCTCAAGAAACCTTTCTCAGTTCCTCCTCAGAGCAACAACAACTCCAAG 471
|||| | |||||||||||||||| |||||| |||||||||||||||||| |
Sbjct 447 AATCCTCCTCCTCTCAAGAAACCTCTCTCAGCTCCTCCTCAGAGCAACAA---------G 497
Query 472 ATCCAACCCTTTTCGAAGATCAGCGGCGGTGATGCGGCGGTGAATCAGTGGGGATCCACA 531
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 498 ATCCAACCCTTTTCGAAGATCAACGGCGGTGATGCGTCGGTGAATCAGTGGGGATCCACA 557
Query 532 AGCACGATTTCAGAGTATTTGATCGATACGTTACCTGGTTGGCACGTTGAGGATTTCCTC 591
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 558 AGCACGATTTCTGAGTATTTGATGGATACGTTACCTGGTTGGCACGTTGAGGATTTCCTC 617
Query 592 GATTCCTCTCTTCCTACTTTTGGTTTCACCAAGAGTGGTGATGATGATGGAGTGTTACCA 651
||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 618 GATTCCTCTCTTCCTACTTATGGTTTCTCTAAGAGTGGTGATGATGATGGAGTGTTACCA 677
Query 652 TATATGGAAGCAGAAGATGACAACA-C--TAAGAGAaacaacaacaacaacaa------- 701
||||||||| ||||||||||||||| | ||||||||||||||||||||||||
Sbjct 678 TATATGGAACCAGAAGATGACAACAACACTAAGAGAAACAACAACAACAACAACAACAAC 737
Query 702 --------TACAGTGTCACTTCCATCTAAGAATTTAGGGATTTGGGTCCCTCAGATTCCA 753
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 AACAACAATACAGTGTCACTTCCATCTAAGAATTTAGGGATTTGGGTCCCTCAGATTCCA 797
Query 754 CAAACTCTTCCTTCTTCATACCCAAATCAATACTTTTCTCAAGACAACAACAATACACAG 813
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 798 CAAACTCTTCCTTCTTCATACCCAAATCAATACTTTTCTCAAGACAACAACA-TACA--G 854
Query 814 TTTGGGATGTACAACAAAGAAACATCACCAGAAGTAGTGTCTTTTGCTCCATTACAAAAC 873
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 855 TTTGGGATGTACAACAAAGAAACATCACCAGAAGTAGTGTCTTTTGCTCCAATACAAAAC 914
Query 874 ATGAAACAACAAGGACAGAACAACAAGAGATGGTATGATGATGGTGGCTTCACTGTCCCA 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 ATGAAACAACAAGGACAGAACAACAAGAGATGGTATGATGATGGTGGCTTCACTGTCCCA 974
Query 934 CAGATTACTCCTCCTC-T-TT-CTTCTAATAAAAAGTTTAGATCTTTCTGGTAATTT-AC 989
||||| |||||||||| | || ||||||||||||||||||||||||||||||||||| ||
Sbjct 975 CAGATCACTCCTCCTCCTCTTTCTTCTAATAAAAAGTTTAGATCTTTCTGGTAATTTTAC 1034
Query 990 TATCTCCCTAAATGGGGC--TTTT------GTTTGTTTGTTTCTCC---ATTTCTCTCAA 1038
||||||||||||||||| |||| |||||||||||||||| ||||||| |||
Sbjct 1035 TATCTCCCTAAATGGGGGAGTTTTTTTTTTGTTTGTTTGTTTCTCCTTCATTTCTCCCAA 1094
Query 1039 CTTCGATCTTAATAGAATTAGGCTCTCTCTATTTTTGTGTTCTGT 1083
||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1095 CTTTGATCTCAATAGAATTAGGCTCTCTCTTTTTTTGTGTTCTGT 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5