BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476702

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G75550.1 | Symbols:  | glycine-rich protein | chr1:28369437-...   771    0.0  


> AT1G75550.1 | Symbols:  | glycine-rich protein | chr1:28369437-28369940 
REVERSE LENGTH=504
Length=504

 Score =  771 bits (417),  Expect = 0.0
 Identities = 475/504 (94%), Gaps = 0/504 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGACAACTTCTTCATTGGTCGTTATCTTCCTCCTCATACTGATCTTGCAAACTAAC  60
            |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1    ATGAAGACAATTTCTTCATTGGTCGTTATCTTCCTCCTCATACTGATCTTTCAAACTAAC  60

Query  61   AAACTAGTGAGTGGGCATGACCGTTCCACTGATCAAGACACGGTCAAGAACAATAACAAT  120
            |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct  61   AAACTAGTGAGTGGGCATGACCGTTCCAATGATCAAGACACGGTCAAGAACAACAACAAT  120

Query  121  GATGAAAACAACACAACCACTGAAGTAGTTTTCAAGGACAAGAAAAGAAGTTATAGTGGA  180
            |||||||||| |||||| || | ||||||| ||| |||||||||||||||||||| ||||
Sbjct  121  GATGAAAACAGCACAACTACGGGAGTAGTTGTCAGGGACAAGAAAAGAAGTTATAATGGA  180

Query  181  GGAAGCGGAAGCTACAGAtggggatggggtggaggaggaggaggaggaggcggtggtggt  240
            ||||||||||| || |||||||||||||||||||| || |||||||||||||| ||||| 
Sbjct  181  GGAAGCGGAAGTTATAGATGGGGATGGGGTGGAGGCGGCGGAGGAGGAGGCGGGGGTGGA  240

Query  241  ggaagaggaggaggtggtggtggtggtggaggaggatggggatggggaggaggaggaggt  300
            ||| ||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  241  GGAGGAGGAGGTGGCGGTGGCGGTGGAGGAGGAGGATGGGGATGGGGAGGAGGAGGAGGT  300

Query  301  ggtggaggatggtACAAATGGGGTTGTGGCGGCggaggaaaaggaaaaggaagagaagga  360
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  301  GGTGGAGGATGGTACAAATGGGGTTGTGGCGGCGGAGGAAAAGGAAAAGGGAGAGAAGGA  360

Query  361  agaggagagtttgtgaaaagagaaTATGCAGAGTGCAAAGGAAGAGGAAAATGTAGAGGA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct  361  AGAGGAGAGTTTGTGAAAAGAGAATATGCAGAGTGCAAAGGAAGAGGAAAATGTTCAGGA  420

Query  421  AAGAGATTGGAATGTCCTCAACATTGTGGAGGTTTTTGTTTTTACGATTGTCTCTTTCTC  480
            ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct  421  AAGAGATTGGAATGTCCTCAACACTGTGGAGGTTTGTGTTTCTACGATTGTCTGTTTCTC  480

Query  481  TGCAAACCTCATTGCCGTCGCTAG  504
            ||||||||||||||||||||||||
Sbjct  481  TGCAAACCTCATTGCCGTCGCTAG  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5