BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476705
Length=662
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75580.1 | Symbols: | SAUR-like auxin-responsive protein fa... 835 0.0
> AT1G75580.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:28377461-28378178 FORWARD LENGTH=718
Length=718
Score = 835 bits (452), Expect = 0.0
Identities = 488/505 (97%), Gaps = 4/505 (1%)
Strand=Plus/Plus
Query 1 CTCTAATTCACGCTCACCTTTCATTGTGAAAACTCAAACCACACACAACAAAAATCC-TT 59
||||||||||| |||||| ||||||||||||||||||||||||||||| | |||||| ||
Sbjct 1 CTCTAATTCACACTCACCCTTCATTGTGAAAACTCAAACCACACACAAGACAAATCCTTT 60
Query 60 TTGAAGAGAATGGCGATGAAAAAAGCAAACAAGCTAACGCAAACGGCGATGATCAAGCAA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGAAGAGAATGGCGATGAAAAAAGCAAACAAGCTAACGCAAACGGCGATGATCAAGCAA 120
Query 120 ATCTTGAAGAGATGCTCGAGCTTGGGAAAGAAACAGAGTAATGTATACAGTGAAGACGAA 179
||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 121 ATCTTGAAGAGGTGCTCGAGCTTGGGAAAGAAACAGAGTAATGTGTACGGTGAAGACGAA 180
Query 180 AACGGATCTCCTCTTAACGTACCCAAAGGTCACTTCGTCGTCTACGTCGGAGAGAATCGG 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 AACGGATCTCCTCTTAACGTACCAAAAGGTCACTTCGTCGTCTACGTCGGAGAGAATCGG 240
Query 240 GTCAGGTACGTTGTGCCCATTTCGTTTTTGACCCGACCTGAGTTTCAGCTTCTTCTCCAA 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTAGGTACGTTGTGCCCATTTCGTTTTTGACCCGACCTGAGTTTCAGCTTCTTCTCCAA 300
Query 300 CAAGCTGAGGAAGAATTTGGCTTTGATCATGACATGGGTCTCACTATCCCTTGTGAAGAA 359
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAAGCCGAGGAAGAGTTTGGCTTTGATCATGACATGGGTCTCACTATCCCTTGTGAAGAA 360
Query 360 GTCGTTTTCCGATCTCTCACCTCCATGCTCCGATGAACATATCTTTTTAGGGTTTTAAAA 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GTCGTTTTCCGATCTCTCACCTCCATGCTCCGATGAACATATCTTTT-AGGGTTTTAAAA 419
Query 420 TATTT-TAGTTATATATTTTGGAGACATGAGATGTTTTAGGAGAACAGAGGAAGCTGCTG 478
| ||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 420 T-TTTCTAGTTATATATTTTGGAGACTTGAGATGTTTTAGGGGAACAGAGGAAGCTGCTG 478
Query 479 AGTAAATGCTTCTCTGTTTTAGCAA 503
|||||||||||||||||||||||||
Sbjct 479 AGTAAATGCTTCTCTGTTTTAGCAA 503
Score = 222 bits (120), Expect = 3e-57
Identities = 155/170 (91%), Gaps = 10/170 (6%)
Strand=Plus/Plus
Query 503 ATATGGGTTTAGTAGTTGTATTAGAGTGAGACTAACCCTT-A-GAGA-AAAACCTAAATG 559
||||||||||||||| |||||||||||||||||||||||| | ||| |||||||| |||
Sbjct 540 ATATGGGTTTAGTAGATGTATTAGAGTGAGACTAACCCTTAATTAGAGAAAACCTAGATG 599
Query 560 AGAATGATTACTATTTTTGGTTATCTTCTCAGATTTACCCTCATGGT-G-GTGT-G--G- 613
||||||||||||||||||||| |||||||||||||||| |||||||| | |||| | |
Sbjct 600 AGAATGATTACTATTTTTGGTCATCTTCTCAGATTTACTCTCATGGTGGTGTGTGGTTGT 659
Query 614 T-AATGTGTACCCTGTGAGAGACTTTTTAATATTTGATGAATGAGACTTT 662
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCAATGTGTACCCTGTGAGAGACTTTTTAATATTTGATGAATGAGACTTT 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31999151639
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5