BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476712
Length=719
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75630.2 | Symbols: AVA-P4 | vacuolar H+-pumping ATPase 16 k... 603 1e-171
AT1G19910.1 | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V... 436 1e-121
> AT1G75630.2 | Symbols: AVA-P4 | vacuolar H+-pumping ATPase 16
kDa proteolipid subunit 4 | chr1:28400544-28402355 FORWARD
LENGTH=1044
Length=1044
Score = 603 bits (326), Expect = 1e-171
Identities = 387/413 (94%), Gaps = 18/413 (4%)
Strand=Plus/Plus
Query 1 AATTTGGTAACAGATCTCATCGGAGCAACA---ATC----A-TCAATGGCTTC-T--GGT 49
|||||||||||||||||||||||||||||| ||| | |||||||||| | |||
Sbjct 74 AATTTGGTAACAGATCTCATCGGAGCAACAGTCATCAAAGAGCCAATGGCTTCTTCAGGT 133
Query 50 TTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTCGGCGCCGCCGCTGCACTCGTT 109
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 134 TTCAGCGGCGATGAAACTGCGCCTTTCTTCGGATTCCTCGGCGCCGCCGCTGCGCTCGTT 193
Query 110 TTCTCCTGTATGGGAGCAGCGTACGGGACGGCGAAGAGTGGCGTCGGAGTTGCGTCGATG 169
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 194 TTCTCCTGTATGGGAGCAGCGTACGGGACGGCGAAGAGTGGAGTTGGAGTTGCGTCGATG 253
Query 170 GGAGTGATGAGACCTGAACTTGTTATGAAATCGATTGTGCCTGTTGTCATGGCTGGTGTT 229
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 254 GGAGTGATGAGACCTGAACTTGTTATGAAATCGATTGTTCCTGTTGTCATGGCTGGTGTG 313
Query 230 TTAGGTATTTATGGTTTGATCATCGCTGTCATCATCAGTACTGGGATTAACCCCAAGGCC 289
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 314 TTAGGTATTTATGGTTTGATCATCGCTGTTATCATCAGTACTGGGATTAACCCCAAGGCC 373
Query 290 AAGTCTTATTACCTATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCT- 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 AAGTCTTATTACCTATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTT 433
Query 349 -CT---CTCT--GCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG 395
|| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG 486
Score = 337 bits (182), Expect = 1e-91
Identities = 233/255 (91%), Gaps = 13/255 (5%)
Strand=Plus/Plus
Query 457 AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGA 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGA 648
Query 517 AGCGCTTGCACTATATGGTCTCATTGTTGGTATCATCCTCTCATCTCGAGCTGGTCAGTC 576
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTCTCATCTCGAGCTGGTCAGTC 708
Query 577 TAGAGCTGAGTGAAAGAAGTGGTGACTTATTGTTAGTATCAACATGTCTCATATCAGAAG 636
|||||||||||||||||||||| |||||||||||| ||||| |||||||||||| |||||
Sbjct 709 TAGAGCTGAGTGAAAGAAGTGGAGACTTATTGTTATTATCATCATGTCTCATATGAGAAG 768
Query 637 TTT-A-G----------CTTCTCCTTTCACTTCtttttttGTGAGTTTGAGTTCTGTTAT 684
||| | | |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 769 TTTCATGTGATGTGTAGCTTCTCCTTTCAGTTCTTTTTC-GTGAGTTTGAGTTCTGTTAT 827
Query 685 GATTGGACACACTTG 699
||| ||||||||||
Sbjct 828 TATTAGACACACTTG 842
> AT1G19910.1 | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V0
complex, subunit C protein | chr1:6913229-6914594 FORWARD
LENGTH=858
Length=858
Score = 436 bits (236), Expect = 1e-121
Identities = 324/366 (89%), Gaps = 7/366 (2%)
Strand=Plus/Plus
Query 38 ATGGCTTCTGGTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTCGGCGCCGCC 97
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 89 ATGGCTTCAACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCC 148
Query 98 GCTGCACTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACGGCGAAGAGTGGCGTCGGA 157
|| || ||||||||||||||||||||||||||||||||||| |||||||| || || ||
Sbjct 149 GCCGCTCTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGT 208
Query 158 GTTGCGTCGATGGGAGTGATGAGACCTGAACTTGTTATGAAATCGATTGTGCCTGTTGTC 217
|| ||||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 209 GTAGCGTCGATGGGTGTGATGAGACCAGAGCTTGTGATGAAATCGATTGTTCCTGTTGTT 268
Query 218 ATGGCTGGTGTTTTAGGTATTTATGGTTTGATCATCGCTGTCATCATCAGTACTGGGATT 277
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 269 ATGGCTGGAGTTTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATC 328
Query 278 AACCCCAAGGCCAAGTCTTATTACCTATTCGATGGCTATGCTCATCTCTCTTCTGGGCTA 337
||||| |||||||||||||| || ||||||||||||||||||||||||||||| || ||
Sbjct 329 AACCCTAAGGCCAAGTCTTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTT 388
Query 338 GCTTGTGGTCTC--T---CTCT--GCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGT 390
|||||||||||| | |||| || ||||||||||||||||| ||||| ||||| |||
Sbjct 389 GCTTGTGGTCTCGCTGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGT 448
Query 391 GTTAGA 396
||||||
Sbjct 449 GTTAGA 454
Score = 202 bits (109), Expect = 4e-51
Identities = 129/139 (93%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 453 TTAGAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTG 512
||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 450 TTAGAGCGAATGCACAACAACCTAAGTTGTTTGTGGGAATGATTCTGATTCTCATCTTTG 509
Query 513 CGGAAGCGCTTGCACTATATGGTCTCATTGTTGGTATCATCCTCTCATCTCGAGCTGGTC 572
| ||||| ||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct 510 CTGAAGCACTTGCCCTGTACGGTCTCATTGTTGGTATCATCCTCTCTTCTCGAGCTGGTC 569
Query 573 AGTCTAGAGCTGAGTGAAA 591
|||||||||| ||||||||
Sbjct 570 AGTCTAGAGCCGAGTGAAA 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34862498018
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5