BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476719
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75710.1 | Symbols: | C2H2-like zinc finger protein | chr1:... 2357 0.0
> AT1G75710.1 | Symbols: | C2H2-like zinc finger protein | chr1:28428706-28431249
FORWARD LENGTH=1610
Length=1610
Score = 2357 bits (1276), Expect = 0.0
Identities = 1522/1632 (93%), Gaps = 52/1632 (3%)
Strand=Plus/Plus
Query 1 TTCGATTTCAACACCT--aaa-aaaaGCTTATAATTAAAGAACCATAAAGAAGAACACAA 57
|||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TTCGATTTCAACACCTAAAAATAAAAGCTTATAATTAAAGAACCATAAAGACGAACACAA 60
Query 58 AAGAAACTCTCACATTCTCAAGTCAAGAGTTTCTTTCTTCTTTCAATGGCTTTACTAACT 117
|||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGAAACTCTCACA-T-TC---TCAAGAGTTTCTTTCTTCTTTCAATGGCTTTACTAACT 115
Query 118 TTCTTGCCGGAAAACGCAGAGGCGCCTCAAAAACACAAGCCACCGTCGAGCAAACGCAAG 177
||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||| |||
Sbjct 116 TTCTTGCCGGAGAACGCAGAGGCGCCACAAAAACACAAGCCAACGTCTAGCAAACGAAAG 175
Query 178 AAACGCGAGAATCCCACCGACCAAACGCAGCCGCGGAAACAGAAACCACACAAGCCGCAG 237
|||||||| |||||||||||||||||||| || ||||||| || | || ||||||
Sbjct 176 AAACGCGATAATCCCACCGACCAAACGCA------GACACAGAAA-CATA-AA-CCGCAG 226
Query 238 AAACCGAAGAAAGAAGTACCTCAGAAGCAGCCATCTTCATGGGACCAAATCAAGAACCTA 297
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 227 AAACCGAAGAAAGCAGTACCTCCGAAGCAGCCATCTTCATGGGACCAAATCAAGAACCTA 286
Query 298 TTGACTTGCAAACAAATTGAAGGGTCAAGAGTCCATGATCCTTCCAAGAACTCTC-ATGT 356
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 287 TTGACTTGCAAACAAATCGAAGGGTCAAGAGTCCATGATCCTTCCAAGAACTCTCAAT-C 345
Query 357 TGGTCCGTCCATGACCACTCATTTATCTCCTTCAAAGCTCGGCTCGTCGTGCAGCTCCAT 416
||||||||||||||| ||| | ||||||||||| ||||| ||||||||||||||||||||
Sbjct 346 TGGTCCGTCCATGACAACTAACTTATCTCCTTCCAAGCTTGGCTCGTCGTGCAGCTCCAT 405
Query 417 ATGCAGCTTCAGAGACGTGGCTCACGGCAATACTCGTGTGGTTCATAGAGCTGATCACTC 476
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 406 TTGCAGCTTTAGAGACGTGGCTCACGGCAACACTCGTGTGGTTCATAGAGCTGATCACTC 465
Query 477 TCCAGACGTAGCTAACTCAGTTGCTCCTAACTCGGAGACTCGGCTTCTGACTCGGAAACC 536
|||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 466 ACCAGACGTAGGTAACTCGGCTACTCCTAACTCGGAGACTCGGCTTCTGACTCGGAAACC 525
Query 537 TGGTCAACACGGATCTTCTTCGTCTCGGTCTCTTACATCTGGCTCAACGAGATCTAACGC 596
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TGGTCAACACGGTTCTTCTTCGTCTCGGTCTCTTACATCTGGCTCAACGAGATCTAACGC 585
Query 597 CAGTGGGAGTTACACGTCATCGTCAACGACTTCGTTTAGAGCCATGCAGTTCCGTAAACT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 CAGTGGGAGTTACACGTCATCGTCAACGACTTCGTTTAGAGCCATGCAGTTCCGTAAACT 645
Query 657 CTCCGGATGTTACGAATGTCACATGATCGTTGACCCTAGCAGGTATCCGATTTCGCCTAG 716
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 646 CTCCGGATGTTACGAATGTCACATGATCGTTGACCCGAGCAGGTATCCGATTTCGCCTAG 705
Query 717 GGTTTGTGCTTGTTCCCAATGTGGAGAAGTTTTTCCCAAGCTTGAAAGCTTAGAGCTTCA 776
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 706 GGTTTGTGCTTGTTCCCAATGTGGAGAAGTTTTCCCCAAGCTTGAAAGCTTAGAGCTTCA 765
Query 777 TCAAGCAGTTCGTCACGCAGTTTCGGAGTTAGGTCCGGAAGATTCGGGTCGAAACATAGT 836
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 766 TCAAGCAGTTCGTCACGCAGTTTCGGAGTTAGGTCCGGAGGATTCGGGTCGAAACATAGT 825
Query 837 GGAGATCATATTCAAATCAAGCTGGCTTAAAAAAGACAGTCCCATCTGTCAGATCGAACG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GGAGATCATATTCAAATCAAGCTGGCTTAAAAAAGACAGTCCCATCTGTCAGATCGAACG 885
Query 897 GATATTAAAAGTCCAAAACACTCAACGTACGATCCAACGGTTTGAGGATTGCCGAGACGC 956
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GATATTAAAAGTCCACAACACTCAACGTACGATCCAACGGTTTGAGGATTGCCGAGACGC 945
Query 957 AGTGAAGGCGCGTGCACTTCAAGCAACCAGAAAAGACGCTCGTTGTGCCGCCGACGGCAA 1016
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 946 AGTGAAGGCGCGTGCACTTCAAGCAACCAGAAAAGATGCTCGTTGTGCCGCCGACGGCAA 1005
Query 1017 CGAGCTTCT-ACGTTTCCACTGCACCACTTTAACTTGTTCTCTCGGAGCTCGTGGCTCTT 1075
|||||| || |||||| |||||||||||| | |||||||| |||||||||||||||||||
Sbjct 1006 CGAGCT-CTTACGTTTTCACTGCACCACTCTCACTTGTTCACTCGGAGCTCGTGGCTCTT 1064
Query 1076 CTTCTCTCTGCTCTAACCTCCCTGGTTGTGGCGTCTGCACTGTGATTCGCCACGGATTCC 1135
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||
Sbjct 1065 CTTCTCTCTGCTCTAACCTCCCTGTTTGTGGCGTCTGCACCGTGATTCGCCACGGTTTCC 1124
Query 1136 AAGGAAAATCTGGCGGCGGAGGAGCCA-CTGCAACCGCTAACGGCGGTGGCGTGAGGACG 1194
||||||||||||| ||||||||||||| | | | || |||| ||||| ||||||||
Sbjct 1125 AAGGAAAATCTGGTGGCGGAGGAGCCAAC-GT--C-GCAAACGCCGGTG---TGAGGACG 1177
Query 1195 ACGGCGAGTAGCGGAAGAGCTGATGATTTGCTGAAGTGTAGCGATGATGCGAGGAGAGTG 1254
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1178 ACGGCGAGCAGCGGAAGAGCTGATGATTTGCTGAGGTGTAGCGATGATGCGAGGAGAGTG 1237
Query 1255 ATGCTTGTGTGCCGTGTGATCGCTGGGAGAGTTAAACGCGTTGATTTACCGGCGGCGGAG 1314
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1238 ATGCTTGTGTGCCGTGTGATCGCTGGGAGAGTTAAGCGAGTTGATTTACCGGCGGCGGAT 1297
Query 1315 GCTCCG--T-C-------------TC--CGGTGGAGGATAACTCGGCGGTTGGCGTTTCT 1356
||| || | | || |||||||||||||||||| |||||| ||||||
Sbjct 1298 GCTTCGGCTACAGCGGAGAAGAAGTCAACGGTGGAGGATAACTCGGTGGTTGGAGTTTCT 1357
Query 1357 ACGAGTGGGGGTACGTTTGACTCGGTGGCGGTCAACGCTGGAGTTTATTCGAATCTTGAG 1416
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1358 TCGAGTGGTGGTACGTTTGACTCGGTGGCGGTCAATGCTGGAGTTTATTCGAATCTTGAG 1417
Query 1417 GAGCTTGTGGTTTATAACCCGAGAGCTATATTACCTTGCTTCGTGGTTATTTACAAAGTT 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 GAGCTTGTGGTTTATAACCCGAGAGCTATATTACCTTGCTTCGTGGTTATTTACAAAGTT 1477
Query 1477 TTAGAATCTTGAATTTGTAATTTTAACTTGAGAAATAATGTTTGTTTTTAGTACTTCTAA 1536
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1478 TTAGAATCTTGAATTTGTAATTTTAACTTGAGAAATAATGTTTGTTTTTTGTACTTCTAA 1537
Query 1537 CTTTTTAATATGATAG--AGA--TTAGGT-TAATCATCAACCTGCATCATAAATCCCATC 1591
||||||||||| |||| ||| ||||| |||||||||||||||||||||| |||||||
Sbjct 1538 CTTTTTAATATTATAGGGAGAGATTAGGGATAATCATCAACCTGCATCATAATTCCCATC 1597
Query 1592 TTATTATTGACT 1603
||||||||||||
Sbjct 1598 TTATTATTGACT 1609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79166259465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5