BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476721
Length=2528
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75730.1 | Symbols: | unknown protein; Has 327 Blast hits t... 2724 0.0
> AT1G75730.1 | Symbols: | unknown protein; Has 327 Blast hits
to 272 proteins in 89 species: Archae - 0; Bacteria - 129;
Metazoa - 68; Fungi - 14; Plants - 20; Viruses - 0; Other Eukaryotes
- 96 (source: NCBI BLink). | chr1:28435706-28439667
REVERSE LENGTH=2739
Length=2739
Score = 2724 bits (1475), Expect = 0.0
Identities = 1904/2096 (91%), Gaps = 90/2096 (4%)
Strand=Plus/Plus
Query 499 CTTCTTCACCTCTAT-CTTGAGTGGTGAGATAAAAAGAAGATGGAAATGGGTCGTCGAGA 557
||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 646 CTTCTTCACCTCT-TGCTTGAGTGGTGAGAAAAAAAGAAGATGGAAATGGGTCGTCGAGA 704
Query 558 TTTGATGAGACGTGGATCAACCAATCGATTTTCCAATAAACAACAATCTGGATCTGGGTT 617
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TTTGATGAGACGTGGAACAACCAATCGATTTTCCAATAAACAACAATCTGGATCTGGGTT 764
Query 618 TTCTACAAAGTCTAAGAAAGGAATGCTGAAGAAAC-TGCGTTTAGCTGATGAGAAACTGA 676
||||||||| ||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 765 TTCTACAAAATCTAAGAAAGGAATGCTGAAGAAACTTG-GTTTTGCTGATGAGAAACTGA 823
Query 677 AACAAGAAATGAGCTACTACGAGACTCTTCCTTGTCCAGATTTAGAAAACGAGGTTTCTA 736
||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 824 AACAAGAGATGAG---CTACGATACTCTTCCTTCTCCAGATTTAGAAAACGAGGTTTCTA 880
Query 737 AGAAGAAATCCAAACTTCCAAAAAAGAATTTGAAAGACACTAATGGTGTGGATCATGCCT 796
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 AGAAGAAATCTAAGCTTCCAAAAAAGAATTTGAAAGACACTAATGGTGTGGATCATGCCT 940
Query 797 CTGTACCACGGAAGCTTCGTTCAGCCATGATCATGAAGAAGCGGAATCTTGAATCTGTTT 856
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 941 CTGTACCACGGAAGCTTCGTTCAG-C-----CATGAAGAAGCGGAATCTTGAATCTGTTT 994
Query 857 CTAAGCTATCCTCTGTTTCAAAGAGACTTAACCGGTCCAAAACCGGGATC-GAATC-TC- 913
|||||||||||||||||||||||||||||||||||| |||||| ||| | ||||| ||
Sbjct 995 CTAAGCTATCCTCTGTTTCAAAGAGACTTAACCGGTTTAAAACC-GGAACTGAATCTTCG 1053
Query 914 -TTAAGAA-G-GA-TCAAGAAATGGAAGCAAAAGCTATTGTTCCTGAGTCGATGATAATT 969
||||||| | || |||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 1054 GTTAAGAAGGAGAGTCAAGAAATGGAAGCAAAAGCTATCGTTACTGAGTCGATGATGATT 1113
Query 970 TCTAAAGATGAGAAAGAAGTTGCAGAGACTTTATACGGTTTAGCTGGAATG-TT--T--- 1023
|| |||||||||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct 1114 TCGAAAGATGAGAAAGAAGTTGCAGAGACTTTATATGGTTTAGCTGGAATGTTTACTGAG 1173
Query 1024 ACTGA---------TAAGAAGACTTGTAATGAGAAAGAAACCAGCAAA---GTTGACTCG 1071
||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1174 ACTGACTCTCTTGGTAAGAAGACTAGTAATGAGAAAGAAACCAGCAAAGTTGTTGACTCA 1233
Query 1072 ATTTTGGTTGTGGAAGATGACTATACAAAAGCCGAATCGCTTATACCGGAT-GTGTCTGT 1130
|||||||||||||||||||||||||||||| |||||||||||| ||||| | || || ||
Sbjct 1234 ATTTTGGTTGTGGAAGATGACTATACAAAAACCGAATCGCTTACACCGG-TGGTTTCAGT 1292
Query 1131 TCTCTCTTCAGCCAAAACTAAGCAGATTGATGCAATGCCATTAGAGCAATCTGATAAACA 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 TCTCTCTTCAGCCAAAACTAAGCAGATTGATGCAATGCCATTAGAGCAATCTGATAAACA 1352
Query 1191 GTTCAGCACAACAGGTATGGTTGATTTCATTGATAGATTGAAGCAAAGCAGCTCAGTGAA 1250
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 GTTCAACACAACAGGAATGGTTGATTTCATTGATAGATTGAAGCAAAGCAGCTCAGTGAA 1412
Query 1251 TGTGAATGATGCACCTGCAAGGGTCAATGACACAAAGGTTGCAACAAG------TCTTGC 1304
|||| |||||||| |||||| |||||||| ||||||||| ||||||| ||||||
Sbjct 1413 AGTGACTGATGCACATGCAAGAGTCAATGAAACAAAGGTTACAACAAGCAACGGTCTTGC 1472
Query 1305 GCTGTGGCCTGGTCTATCTTCAACAACTGTTCATTCAGGAGCTCAAGTTCTTTCAAAGTC 1364
||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1473 TCTGTGGCCTGGCCTTTCTTCAACAACTGTTCATTCAGGAGCTCAAGTTCTTTCAAAGCC 1532
Query 1365 ATCTTCGACAAAGCTTCCTCCTTGGATGGGTCAAGCTGTTTCTCCTTCCAATAGTGCTTC 1424
|||||| ||||||||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 1533 ATCTTCAACAAAGCTTCCACCGTGGATGGGTCAAGCTGTTTCTCCTTCCAATACTGCTTC 1592
Query 1425 ACTCTTGA---GTGAACCATTAAGAGCCCAGCAGAGAAAGTTGAAGAGATGTGCCTCTCA 1481
|||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1593 ACTCTTGAACTGTGAACCATTAAGAGTCCAGCCGAGAAAGTTGAAGAGATGTGCCTCTCA 1652
Query 1482 CATTTACATTTCCCGTCTCATTAAAGTATTACAGACCAGTAAGAGTAGTCCCACGACACT 1541
|| |||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 1653 TATATACATTTCCCGTCTCATTAAAGTATTACAGACCAGTAAGAGTAGTCTCGCAACACT 1712
Query 1542 TAACCAAAACGAGCAAAGATCTTTTGAAATGTCAGAACGTAGGCTCCCTGATTCAGTGAT 1601
|||||||||||||||||||| || |||||||||||||| || |||||||||||||||||
Sbjct 1713 TAACCAAAACGAGCAAAGATATTCAGAAATGTCAGAACGCAGACTCCCTGATTCAGTGAT 1772
Query 1602 AACCATTAATGACTTTAAAACAATGGTTTCTCCAGCTAAGAGGTATCAAAACCCGCATCT 1661
||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||
Sbjct 1773 AACCATTAATGACTTTAAAGCAATAGTTTCTCCACCTAAGAGGTATCAAAACCCGCATCT 1832
Query 1662 GCTCGATATACACAGGACGCATAACCCAAAACCCGTGCAAGAAGACATGACTAAGCTTGC 1721
||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1833 GCTCGATATGCACCGGGCACATAACCCAAAACCCGTGCAAGAAGACATGACTAAGCTTGC 1892
Query 1722 TCTCGAACTCTACGGTCCGCACACTTCACAGAAACAGAGCTTCGATTTCCTAAGTCTCTC 1781
|||||| ||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1893 TCTCGAGCTCTATGGTCCACACACTTCACAGAAACAAAGCTTTGATTTCCTAAGTCTCTC 1952
Query 1782 ATCTGCTGGAGCAGCACAATCTCATTTCCCACTTCCAAACTCGTTTCCACAGTATCAGAT 1841
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1953 ATCTGCTGGAGCAGCACAATCTCATTTCCCACTTCCAAACTCATTTCCACAGTATCAAAT 2012
Query 1842 CTCTGCAGCTTACAATAGCCAGCTCTCACCTGCAACTTCTAGCCATCAGGTGCAGCAGCT 1901
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2013 CTCTGCAGCTTACAATAGCCAGCTCTCACCTGCTACTTCTAGCCATCAGGTGCAGCAGCT 2072
Query 1902 TTCTCCGTATCTAGCAAGTAGATTCCAAACCGCTTACAACGCAAACCAGCAGCAGCAGCA 1961
|||||| |||||||| ||| | ||||| ||||||||||||||||||||||||||||| ||
Sbjct 2073 TTCTCCTTATCTAGCCAGTCGGTTCCAGACCGCTTACAACGCAAACCAGCAGCAGCAACA 2132
Query 1962 ACAGCTTCAAAAAAGGCTATGGGCTGCTCAGTACAGACCAACAAATGGAAACACCATGCA 2021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2133 ACAGCTTCAAAAAAGGCTATGGGCTGCTCAGTACAGACCAACAAATGGAAACACCATGCA 2192
Query 2022 ATCGAACCAATACAGTAAACCAAACCTCTCCTTAAACCTGACTAGTATTCAACAACCTCC 2081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2193 GTCGAACCAATACAGTAAACCAAACCTCTCCTTAAACCTGACTAGTATTCAACAACCTC- 2251
Query 2082 TC-AGGTTACTTCCTCCCCAAGGTACAACAACAATGTATCTCAACAGCAACATCGTCTCA 2140
|| ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 2252 TCCAGGTTTCTTCCTCCCCAAGGTACAACCACAATGTATCTCAACAACAACATCGTCTCA 2311
Query 2141 TGGCTGCTGCAGCAGCAATGTCAATGAGTCATCACCATAATAACAATCCTTCGCGGACAG 2200
|| ||||||| ||||||||||||||||| ||||| |||||||| ||| || ||| | |
Sbjct 2312 TGACTGCTGCTGCAGCAATGTCAATGAGCCATCAACATAATAA---TCCATCACGGGCGG 2368
Query 2201 TGATGAACAGACAAGAACACCATTTCCCACTTATCTATGAAGATACAAGGACACCATTGC 2260
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2369 TGATGAATAGACAAGAACACCATTTCCCACTTATATATGAAGATACAAGGACACCGTTGC 2428
Query 2261 AACTACTCTGCAACGAGCAGTCGTGAAGCTGCCTGTTTTGCTTTATAGCTAAATAGTTGT 2320
||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |
Sbjct 2429 AACTACTCTGCAATGAGCAATCGTGAAGCTGCCTGTTT-GCTTTATAGTTAAATAGTTCT 2487
Query 2321 AAGGATTTTACAGATGGTTGAGaaaaaaaaaCAGAGATCTTCGTCGTAATTTGAGAT--- 2377
||||||||||||||| ||||||||||||| |||||||||||| || ||||||||||
Sbjct 2488 AAGGATTTTACAGATAGTTGAGAAAAAAA--CAGAGATCTTCGCCGGAATTTGAGATTCT 2545
Query 2378 -G--G-TGATGAAAAGCAGATGAACAAGGATTGTGATCAGCGAGAGATGATTGAATCCCA 2433
| | ||||||||| | |||||||||||||||||| | ||||||||||||| || ||
Sbjct 2546 AGATGGTGATGAAAATCCGATGAACAAGGATTGTGA---GTGAGAGATGATTGA-TCACA 2601
Query 2434 CTTGTTTGAGAAACCCCT-TAAA--TG------A-T--A------C-ACGAGTTCTCAA- 2473
||||||||||||| |||| |||| || | | | | ||||||||||||
Sbjct 2602 CTTGTTTGAGAAAACCCTATAAAAATGTCTTTTAATGTAAATGATCCACGAGTTCTCAAA 2661
Query 2474 -GAGGCAAATTTTGTCGACGACTCTGTTATCTGAACTGAGAGACAGTCACAGGAAA 2528
||||||||||||||||| |||||||||||||||| |||||||||||||||| |||
Sbjct 2662 AGAGGCAAATTTTGTCGAGGACTCTGTTATCTGAAGTGAGAGACAGTCACAGAAAA 2717
Score = 396 bits (214), Expect = 6e-109
Identities = 438/532 (82%), Gaps = 72/532 (14%)
Strand=Plus/Plus
Query 1 CGACAGCTTCGGATTATCCGTCTTTTGGGAATTTGGAAACTTTGAGAAAATACAAAG-AC 59
|||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||| ||
Sbjct 10 CGACAGCTTCGGATTATCCGTCTTATCGGAATGTGGAAACTTTGAGAAAATAC-AAGAAC 68
Query 60 -A--C--ACA-AG--ACA-AGGTTTAC--tttttttttt-t-tATTTTCTCTATTTGAAA 106
| | | | || ||| | | || |||||||||| | | ||||||||||||||||
Sbjct 69 AACTCATAGAGAGACACACAAG-AGACGTTTTTTTTTTTATCTCTTTTCTCTATTTGAAA 127
Query 107 TCTCTGAATAGCTTCTGTGTTTTTCGATGATTTGTACT-TGT--G------TA-CGT-TT 155
|||||||||||||||||||||||||||||||||||||| ||| | || | | ||
Sbjct 128 TCTCTGAATAGCTTCTGTGTTTTTCGATGATTTGTACTGTGTACGTTTTTTTATCTTCTT 187
Query 156 -T-CTTCTTCTTCTTGTGTCAGTTACATATCAATGTTTTGATTTGATTGAAGAACAGTGA 213
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 188 CTACTTCTTCTTCTTGTGTCAGTTACATATCAATG-TTTGATTTGATTGAAGAACAGTGA 246
Query 214 CTCCTTTTATGAAGC--T--TTA-A--AAA------ATTC---AAAAATCTAC-A-CT-- 253
|||| || ||||||| | ||| | ||| ||| ||||||| || | ||
Sbjct 247 CTCCATTAATGAAGCTTTCCTTATAGTAAATGCTTTTTTCGAAAAAAATCAACGATCTAC 306
Query 254 A--tttttttttt-tATTCACGGGTTGAATGTACCAAACATTAATAATAGTTTAATACTA 310
| |||||||||| ||||||||||||||||||| ||||||||||||||| | || | ||
Sbjct 307 ATTTTTTTTTTTTGTATTCACGGGTTGAATGTA-CAAACATTAATAATA-ATAAAAAATA 364
Query 311 A--TCTTCTTT--CT-TTC-ttttttt-tttt---ttt-tttg--gc-t-t-ttttATTT 354
| |||||||| | ||| ||||||| |||| ||| |||| | | | ||||||||
Sbjct 365 ATTTCTTCTTTAAGTCTTCTTTTTTTTCTTTTGGCTTTATTTGTCTCATCTCTTTTATTT 424
Query 355 CACGAAGAACCTGATTCTTCGAGACACGAGAAACGAttttataacttttctctctttttt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CACGAAGAACCTGATTCTTCGAGACACGAGAAACGATTTTATAACTTTTCTCTCTTTTTT 484
Query 415 -tcctcttcttctttaacgtctttttacttttctctcttttctcttcttctt 465
| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 CTTTTCCTCTTCTTTAACGTCTTTTTACTTTTCTCTCTTTTCTCTTCTTCTT 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125467524443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5