BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476723
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75760.1 | Symbols: | ER lumen protein retaining receptor f... 1672 0.0
> AT1G75760.1 | Symbols: | ER lumen protein retaining receptor
family protein | chr1:28446632-28448646 REVERSE LENGTH=1352
Length=1352
Score = 1672 bits (905), Expect = 0.0
Identities = 1079/1159 (93%), Gaps = 27/1159 (2%)
Strand=Plus/Plus
Query 108 CAAT-ATCATCGTACCAAGTTCCTAAAGGTTTCGACTTTACTGTTTCTATTTTCGGAAAG 166
|||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 CAATCATCACCGCACCAAGTTCCTAAAGGTTTCGACTTTACTGTTTCTATTTTCGGAAAG 202
Query 167 AAATTG-AATGATTG-AATCGAAGATGAAGGCGGCGAA-GAGGCCGATCCACGCCGTGAC 223
| | || || ||||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct 203 AGAGTGCAA-GATTGAAATCGAAGATGAAGGCGGC-AACAAGGCCGATCCACGCCGTGAC 260
Query 224 GACATGGGTTCGTCGGCAACCACCAAAGGTTAAAGCTTTTCTCGGTGTTGTGTCCGCCAT 283
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 261 GACATGGGTTCGTCGGCAACCACCAAAGGTTAAAGGTTTTCTCGGTGTTGTCTCCGCCAT 320
Query 284 GACTGCTCTCGTTTTGTTGAGAATGATTGTTCATGACCACGACAATCTTTTTGTCGCTGC 343
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 321 GACTGCCCTCGTTTTGTTGAGAGTGATTGTTCATGACCACGACAATCTTTTTGTCGCTGC 380
Query 344 TGAGGCTGTTCATGCCCTTGGAATCTCCGTCCTTATCTATAAACTCACCAAGGAGAAGAC 403
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 381 TGAAGCTGTTCATTCCCTTGGAATCTCCGTCCTTATCTATAAACTCACCAAGGAGAGGAC 440
Query 404 TTGTGCTGGATTATCTCTCAAGTCACAAGAGCTAACGGCTCTGTTTTTGGCGGTGAGATT 463
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 441 TTGTGCTGGATTATCTCTCAAGTCACAAGAGCTAACAGCTCTGTTTTTGGCGGTGAGACT 500
Query 464 GTATTGTAGTTTTGTGATGGAATTTGATATTCACACGTTGCTTGATTCGGCTACATTGGT 523
||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 501 GTATTGTAGTTTTGTGATGGAGTTTGATATTCACACGTTACTTGACTCGGCTACATTGGT 560
Query 524 GACTACACTTTTTGTTATCTATATGATCCGTTTTAAGCTCAAAGCTAGTTACATGGAAGA 583
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 561 GACTACACTTTTTGTTATCTATATGATCCGTTTTAAGCTCAAAGCTAGTTATATGGACGA 620
Query 584 CAAAGACAATTTTGCTATCTACTACGTCGTTATTCCATGTTTTGTTCTATCAGTCCTTAT 643
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 621 CAAAGACAATTTTGCTATCTACTACGTCGTTATTCCATGTGTTGTTCTATCAGTACTCAT 680
Query 644 TCACCCATCAACACATCATCATATAATCAATAAGATTTCTTGGGCCTTCTGCGTTTACCT 703
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 681 TCACCCATCAACACATCATCATATAATCAATAAGATTTCTTGGGCCTTCTGTGTTTACCT 740
Query 704 TGAAGCTGTTTCAGTCCTTCCTCAACTTAGAGTCATGCAAAACACTAAGATCGTGGAGCC 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGAAGCTGTTTCAGTCCTTCCTCAACTTAGAGTCATGCAAAACACTAAGATCGTGGAGCC 800
Query 764 ATTCACAGCACATTACGTATTCGCTTTGGGGATAGCGAGGTTCTTGAGTTGTGCACACTG 823
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 801 ATTTACAGCACATTACGTATTCGCTTTGGGGATCGCTAGGTTCTTGAGTTGTGCACACTG 860
Query 824 GGTCCTTCAGGTTTTGGACACTCGAGGGCGGTTATTGACTGCTTTAGGATATGGTTTCTG 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 GGTCCTTCAGGTTTTGGACACTCGAGGGCGGTTATTGACTGCTTTAGGATATGGTTTCTG 920
Query 884 GCCTATAATGGTCCT-CTTTTCTGAAATTGTCCAAACCTTCATTCTCGCCGACTTCTGCT 942
|||||||||||| || || | ||||||| ||||||||||||||||| |||||||||||||
Sbjct 921 GCCTATAATGGTTCTTCTCT-CTGAAATCGTCCAAACCTTCATTCTAGCCGACTTCTGCT 979
Query 943 ACTACTATGTCAAGAGTTTAATGGGTGGTCAGCTCGTTCTTCGTCTCCCATCAGGTGTTG 1002
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 980 ACTACTATGTCAAGAGTTTAATGGGTGGTCAGCTTGTTCTTCGTCTCCCGTCAGGTGTTG 1039
Query 1003 TGTAAAATTTGGTGGAAACGAGATAAGAAGAAGATATGGTGTTGCTT-GAGCTTATGATG 1061
||| |||||||||| | ||||||||||||| |||||||||| ||||||||| ||
Sbjct 1040 TGTGAAATTTGGTGTA-------TAAGAAGAAGATACGGTGTTGCTTTGAGCTTATGGTG 1092
Query 1062 TGGAGTAATGATCCATGTCTTGCAGGCTAATCGttttgagtcttctctaatctctttttt 1121
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 TGGTGTAATGATCCATGTCTTGCAGGCTAATCGTTTTGAGTCTTCTCTAATCTCTTTTTT 1152
Query 1122 tctt------ccctttatgttttttttctttcttGGAGGACTTGTAAAGAAAAAA-GAAA 1174
| || ||||||||||||||| | |||||| |||||||||||||||||||| | |
Sbjct 1153 TTTTTTTTTTCCCTTTATGTTTTTTCT-TTTCTTAGAGGACTTGTAAAGAAAAAAAGGGA 1211
Query 1175 ATTGATTATAGATTATGAGTTTTTATATTATGTAGTTTTATG-TTGTTTCCAGAAGCAAT 1233
||| |||| ||||| |||||||| | || || || ||| | ||||||||||||||||
Sbjct 1212 ATTAATTAGAGATTTTGAGTTTTAACAT-AT-TAATTTAAAACTTGTTTCCAGAAGCAAG 1269
Query 1234 TAGATGAATGCTTTGGTGT 1252
|||||||||| ||||||||
Sbjct 1270 TAGATGAATGTTTTGGTGT 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62499678525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5