BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476726
Length=1684
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75790.1 | Symbols: sks18 | SKU5 similar 18 | chr1:28454781... 2531 0.0
> AT1G75790.1 | Symbols: sks18 | SKU5 similar 18 | chr1:28454781-28457528
REVERSE LENGTH=1977
Length=1977
Score = 2531 bits (1370), Expect = 0.0
Identities = 1576/1676 (94%), Gaps = 11/1676 (1%)
Strand=Plus/Plus
Query 1 TTTCGCGATGAGGCATGTCTTTGTCGAGGTGGTT-GTTCTGATATCTTTGGTTATCTTGG 59
|||||||||||| ||||||||||||||||| ||| |||||||| |||||||| |||||||
Sbjct 134 TTTCGCGATGAGACATGTCTTTGTCGAGGT-GTTGGTTCTGATCTCTTTGGTCATCTTGG 192
Query 60 AGTTGAGCTATGCGTTTGCACCAATCGT-ATCGTATCAATGGGTCGTCTCTTATTCTCAA 118
|||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 193 AGTTGAGCTATGCGTTTGCACCAATC-TCATCGTATCAATGGGTCGTCTCGTATTCTCAA 251
Query 119 CGTTTCATTCTTGGAGGCAACAAGCAGGTTATAGTGATCAACGACATGTTTCCTGGACCG 178
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 252 CGTTTCATTCTTGGAGGCAACAAGCAGGTTATAGTGATCAACGACATGTTCCCTGGACCG 311
Query 179 ATGCTTAATGCAACAGCAAACGATGTCATAATCGTTAACATTTTCAACAATTTGCACGAA 238
|| ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||
Sbjct 312 ATCCTTAATGCAACAGCAAACGATATCATTGTCGTTAACATTTTCAACAATTTGCCCGAA 371
Query 239 CCCTTTCTCATGACCTGGAATGGCTTGCAATTGCGGAAGAACTCGTGGCAAGATGGAGTT 298
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 372 CCCTTCCTCATGACTTGGAATGGATTGCAATTGCGGAAGAACTCGTGGCAAGATGGAGTT 431
Query 299 CGAGGGACAAACTGTCCCATACTACCGGGGACAAATTGGACTTACCGATTTCAGGTGAAG 358
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 432 CGAGGGACAAACTGTCCCATACTACCGGGGACAAATTGGACGTACCGTTTTCAGGTGAAG 491
Query 359 GATCAGATCGGAAGTTACTTTTACTTTCC-ATCGCTTCTACTCCAGAAAGCGGCCGGAGG 417
||||| || |||||||||||||| ||||| | | |||||||| |||||||| ||||||||
Sbjct 492 GATCAAATTGGAAGTTACTTTTATTTTCCGA-CCCTTCTACTTCAGAAAGCTGCCGGAGG 550
Query 418 ATACGGTGCTATTAGAATCTATACCCCAGAACTTGTCCCGGTTCCATTCCCTAAGCCCGA 477
|||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 551 ATACGGTGCTATTAGAATCTATCCCCCAGAACTTGTCCCAGTCCCATTCCCTAAGCCCGA 610
Query 478 TGAAGAATACGACATCTTGATTGGAGATTGGTTCTATGC-CGACCATACAGTTATGAGAG 536
|||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 611 CGAAGAATACGACATCTTGATTGGAGATTGGTTTTAT-CTCGACCATACAGTTATGAGAG 669
Query 537 CTTCACTTGACACTGGTCACAGCTTGCCAAAGCCTGATGGTATTCTTTTTAACGGGCGTG 596
||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 670 CTTCACTTGACGCTGGTCACAGTTTGCCAAATCCTGATGGTATTCTTTTTAACGGGCGTG 729
Query 597 GACCTGAAGAGACCTTCTTTGCATTTGAACCAGGTAAAACATATAGGCTAAGAATATCAA 656
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 730 GCCCTGAAGAGACCTTCTTTGCATTTGAACCAGGCAAAACATATAGGCTAAGAATATCAA 789
Query 657 ACGTGGGTCTCAAAACATGCTTAAACTTCAGAATCCAAGACCATGATATGCTTCTAGTTG 716
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 790 ACGTGGGTCTCAAAACATGCTTAAACTTCAGAATCCAAGACCACGATATGCTTCTAGTTG 849
Query 717 AGACAGAGGGTACGTATGTTCAAAAACGTGTTTACTCGAGCCTGGACATCCACGTAGGCC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 AGACAGAGGGTACGTATGTTCAAAAACGTGTTTACTCGAGCCTGGACATCCACGTAGGCC 909
Query 777 AATCATACTCTGTTCTAGTCACTGCCAAAACCGACCCGGTTGGAATCTACCGGTCCTACT 836
||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 910 AATCATACTCTATTCTTGTCACTGCCAAAACCGACCCGGTTGGAATTTACCGGTCTTACT 969
Query 837 ACATATACGCCACAGCCCGGTTCACTGATTTCTACCTTGGCGGTAGAGCTTTGATTAGAT 896
|||||| ||||||||| ||||||||||||| |||||||||||||| |||||| ||| |||
Sbjct 970 ACATATTCGCCACAGCTCGGTTCACTGATTCCTACCTTGGCGGTATAGCTTTAATTCGAT 1029
Query 897 ATCCCAATTCCCCACTTGATCCGGTCGGACCAGTTCCACTCGCACCTGCTTCGTGGGATT 956
||||| |||||||||||| || ||||||| || ||||||||||||||||| | ||||
Sbjct 1030 ATCCCGGTTCCCCACTTGACCCAGTCGGACAAGGTCCACTCGCACCTGCTTTGCAAGATT 1089
Query 957 ACT-CTTCCTCAGTTGAACAAGCCCTTTCCATTAGAATGGACCTAAACGTTGGAGCAGCA 1015
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1090 -TTGGTTCCTCAGTTGAACAAGCCCTTTCCATTAGAATGGACCTGAACGTTGGAGCAGCA 1148
Query 1016 AGATCGAACCCACAAGGTTCGTACCACTACGGACGTATAAACGTAACCAGAACAATAATA 1075
||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1149 AGATCGAACCCTCAAGGTTCGTACCACTATGGACGAATAAACGTAACCAGAACGATAATA 1208
Query 1076 TTACATAACGACGTTATGCTGTCGTCGGGCAAACTACGTTATACGATTAACGGCGTTTCG 1135
|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 1209 TTACATAACGACGTTATGTTATCGTCGGGCAAACTACGGTATACGATTAACGGCGTTTCG 1268
Query 1136 TTTGTCTACCCTGATACTCCGTTAAAGCTCGTTGATCATTTCCAGCTAAATGACACGATT 1195
||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1269 TTTGTCTACCCCGAGACTCCGTTAAAGCTCGTTGATCATTTTCAGCTAAATGACACGATA 1328
Query 1196 ATCCCCGACATGTTCCCGGTTTATCCATCCAACAAAACACCGAGTCTTGGAACTTCAGTG 1255
||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1329 ATCCCTGGCATGTTCCCGGTTTATCCATCCAACAAAACACCGACTCTTGGAACTTCAGTG 1388
Query 1256 GTCGATATTCATTACAAAGATTTTGTCCACATCGTGTTCCAGAATCCTTTATTTGAATTG 1315
||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||
Sbjct 1389 GTCGATATTCATTACAAAGATTTCATCCACATCGTGTTCCAGAACCCTCTATTTGGATTG 1448
Query 1316 GAGAGTTATCACATCGATGGTTACAATTTTTTCGTTGTCGGATATGGATTTGGAGCTTGG 1375
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1449 GAGAGTTATCACATCGATGGTTACAATTTCTTCGTTGTCGGATATGGATTTGGAGCTTGG 1508
Query 1376 TCTGAGAGCAAAAGAGCTGGATATAACTTAGTTGATGCTGTTTCACGGTCAACAATTCAG 1435
||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1509 TCTGAAAGCAAAAAAGCTGGATATAACTTAGTAGATGCTGTTTCACGGTCAACAGTTCAG 1568
Query 1436 GTTTATCCATATTCGTGGGCAGCAATACTAATAGCTATGGATAATCAAGGAATGTGGAAC 1495
|||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct 1569 GTTTATCCATATTCGTGGACAGCAATATTGATAGCTATGGATAATCAAGGAATGTGGAAC 1628
Query 1496 GTGAGATCACAGAAAGCAGAGCAATGGTATCTTGGTCAAGAGCTTTATATGAGAGTTAAA 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GTGAGATCACAGAAAGCAGAGCAATGGTATCTTGGTCAAGAGCTTTATATGAGAGTTAAA 1688
Query 1556 GGTGAAGGACAAGAAGATCCTTCGAATATTCCGGTTAGAGATGAAAATCCGATACCGGGA 1615
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1689 GGTGAAGGAGAAGAAGATCCTTCGACTATTCCGGTTAGAGATGAAAATCCGATACCGGGA 1748
Query 1616 AATGTCATCCGTTGTGGCAAAGTTCTTTAATAACTAATTGTTTTAAATAATTAAAA 1671
||||||||||||||||||||||||| |||||| ||||||| | ||||||| ||||
Sbjct 1749 AATGTCATCCGTTGTGGCAAAGTTCGATAATAATTAATTGTCTGAAATAAT-AAAA 1803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83232503610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5