BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476734
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75860.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1328 0.0
> AT1G75860.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G20100.1);
Has 258 Blast hits to 235 proteins in 58 species: Archae -
0; Bacteria - 4; Metazoa - 59; Fungi - 16; Plants - 90; Viruses
- 0; Other Eukaryotes - 89 (source: NCBI BLink). | chr1:28484163-28485951
REVERSE LENGTH=1194
Length=1194
Score = 1328 bits (719), Expect = 0.0
Identities = 963/1076 (89%), Gaps = 35/1076 (3%)
Strand=Plus/Plus
Query 53 GTTGCTTGAATCTGAAGCTAACCTTGGGTTAATTCGATTGCATCGCCTTTG-G-CCTTTA 110
||||||||||||||||||||| |||||||||||| ||||| | | | | | ||| |
Sbjct 127 GTTGCTTGAATCTGAAGCTAATCTTGGGTTAATTGGATTG-TTAG-AATCGAGACCTAAA 184
Query 111 TCCTCCGATTGGATCTGAGAAAATATGTCGCGCGTTCTCACTTGCCCACCGCTTGTGTTT 170
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TCCTTCGATTGGATCAGAGAAAATATGTCGCGCGTTCTCACTTGCCCACCGCTTGTGTTT 244
Query 171 GCAAGGAACCAAGC-GAGCGTTCATAACTTGGTCGAATCGACTAAGCTTGAAAGAATCAC 229
||||| ||||| | | ||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 245 GCAAGAAACCACGTTG-GCGTTCAAAACTTGGTCGAATCGACTAAGCTTAAAAGAATCAC 303
Query 230 ACTTGATTCGAAAAAGGCGCACCGGATAGAGAAGAAGGA---GAAG-AGAATAGAAAAGA 285
||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 304 ACTTGATTCAAAAAAGGCGCACCGGATAGAGAAGAAGGAAAAGAAGGAGAAGAGAAAAGA 363
Query 286 TA-G---GAA-CTAAGCTTCCGAAATCACATAAACATTCGATTAAAGCTGCTGATAATCA 340
| | ||| |||||| | |||||| |||||||||||||||||||| ||||||||||
Sbjct 364 AAAGAAAGAAACTAAGCGTGAGAAATCGCATAAACATTCGATTAAAGCAACTGATAATCA 423
Query 341 TCACAAGCTAGTATTTCTTCCCTCCAAGAAAGTCTCAGATGAGTCTGTC-CAACTTGAGA 399
|||||||||| |||||||||| ||||||||||| ||||||||||||| | || || ||||
Sbjct 424 TCACAAGCTAATATTTCTTCCTTCCAAGAAAGTGTCAGATGAGTCTGACTCA-CTAGAGA 482
Query 400 AGAGTGGTTTGACAGAGGAGCTCGAGGAACCTCAAAACCATCTTGGATATTTGTCTGATG 459
|||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||
Sbjct 483 AGAGTGGTTTGACAGATGAGCTTGAGGAACCTCAAAAACACCTTGGATATTTGTCTGATG 542
Query 460 GAAGTCAGAATAGTAAGAAGAGGAATAGAGACAACTCTCCTCCGGCAGTTGACAGTCTCA 519
|||||||||||||||||||||||| |||||| | ||||||||||| ||||| |||||||
Sbjct 543 GAAGTCAGAATAGTAAGAAGAGGATTAGAGATGATTCTCCTCCGGCTGTTGAAAGTCTCA 602
Query 520 TCAAAGCTACACCTGTAGCAGGTAAACCTCTACGGATTCGGTTGATCTTCAAAAAACCAA 579
|||||||| ||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 603 TCAAAGCTGCACCTGTAGCAGGTAAACCTCTACGGATTAGAATGGTCTTCAAAAAACCAA 662
Query 580 AAGAGGAAGTTCCTG-TACTGCCTAGAGAGGGTCTTGTTTGCTCCACTACAGCTGCAAAG 638
| |||||||||||| | ||||||||||||| | |||||||||||||||||| |||||||
Sbjct 663 AGGAGGAAGTTCCTACT-CTGCCTAGAGAGGCTGTTGTTTGCTCCACTACAGTTGCAAAG 721
Query 639 TCTCTAAGTCACCAAGATGTCATAACAAGTTCTATATCA-G--CAT---C-T--GAGCTT 689
|| || ||||||||||||||||||||||||||||| ||| | || | | ||||||
Sbjct 722 TCGCTCAGTCACCAAGATGTCATAACAAGTTCTATCTCAAGTTCAAAAACATCCGAGCTT 781
Query 690 GAAGAGAATCTGCCGTCAACATCTGTAGCAGCGGCAATAGATGAAACAAAGAAGAGAAAG 749
||| ||||||||||||||||||| |||| | | ||||||||||||||||||||||||||
Sbjct 782 GAAAAGAATCTGCCGTCAACATCAATAGC-G-G-CAATAGATGAAACAAAGAAGAGAAAG 838
Query 750 AAACACAGACCTAGCAAAGAAGATCAATACAATGCATTGTTTGATGGTTGGACTCCGTC- 808
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 839 AAACACAGATCTAGCAAAGAAGATCAATACAATGCATTGTTTGATGGTTGGACTCC-TCC 897
Query 809 TTCCATTTGTTTTGCTGATTCTTCTTCAAATGACAATAGTGATGATTGGCTATTTGGGAA 868
|||||| ||| |||||||| | ||||||||||||||| ||||| ||||||||||||||||
Sbjct 898 TTCCATGTGTATTGCTGATGCATCTTCAAATGACAATGGTGATTATTGGCTATTTGGGAA 957
Query 869 CAAGACGCAAGAGATGCTTAAGCCCAAAGCAGCAGTCAAGATTGCCGATGACATGATGAT 928
||||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct 958 CAAGACGCAAGAGGTGCTTAAGCCCAAAGCAGCAGTCAAGGTTGATGATGACACGATGAT 1017
Query 929 TAAACCGGGAGATTCATCTTGGCATAGAGCTCAATTTTTGTCTGAAGTTGGGATTTATTC 988
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 GAGACCGGGAGATTCATCTTGGCCTAGAGCTCAATTTTTGTCTGAAGTTGGGATTTATTC 1077
Query 989 TTTACCGTACACCGTCCCGTTCTAATTGCTCGATTCTTTTTGTTCTAGCTTTAGGCTTAA 1048
|||||| || || ||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1078 TTTACCTTATACTGTCCCGTTCTAAT-GCTCGATTCTTTTTGTTCTAGCTTTAGACTTA- 1135
Query 1049 GCTTGTACAGTGTTTGACTTTTTGTAACAACAATTCTAATCTAACCCAATTTTGAT 1104
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1136 GCTTGTACAGTGTTTGACTGTTTGTAACAACAATTCTAATCTAACCCGATTTTGAT 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5