BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476748
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75980.1 | Symbols: | Single hybrid motif superfamily prote... 1201 0.0
> AT1G75980.1 | Symbols: | Single hybrid motif superfamily protein
| chr1:28522554-28524337 REVERSE LENGTH=1095
Length=1095
Score = 1201 bits (650), Expect = 0.0
Identities = 845/934 (90%), Gaps = 34/934 (4%)
Strand=Plus/Plus
Query 1 GTTTTTCCGCCGTCGAAGGTTAAACACTCGAAACAATGGAGATTCAAAAGCCTGAGGTAG 60
|||||| ||||||| ||||||||||| |||||||||||||||||| |||| ||| ||||
Sbjct 1 GTTTTTTCGCCGTCAAAGGTTAAACAGTCGAAACAATGGAGATTCTGAAGCTTGATGTAG 60
Query 61 CGAAGAATCCAGAAATTGAAGATACAATCGAATTAACCAA-GCAAAGGAGACACGACGAA 119
||||| |||||||||||| ||||||||||||||||| || |||| |||| ||||||||
Sbjct 61 CGAAGTTTCCAGAAATTGAGGATACAATCGAATTAACTAACCCAAA-GAGAAACGACGAA 119
Query 120 GTAGAAGATTGCGACGAGCAACAACATAAGCAGCATCAAGCT---GAAGAAGAT---GAG 173
||||||||||||||||| | ||||| |||||||| | |||| |||||||| |||
Sbjct 120 GTAGAAGATTGCGACGA-C--CAACAGAAGCAGCAGCTAGCTACACAAGAAGATGAAGAG 176
Query 174 GAAGACGAATTGCGAAAGCTTCTGCTTTCAGATATTGGAGAGCTTCCGATTTCTCCTCCT 233
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 177 GAAGACGAATTGAGAAAGCTTCTGCTTTCAGATATTGGAGAACTTCCGATTTCTCCTCCT 236
Query 234 TCAGGTACACAAGTCAATTTCGTTTCTTACTTCATTACAGATTTTACGAAATCGGGTCAT 293
|||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 237 TCAGCTACACAAGTCAATTTTGTTTCTTACTTCATCACAGATTTTACTAAATCGGGTCAT 296
Query 294 GATCAATATATTTACCGTCACGCAAATGGTTTGTGTGTAATTGGATTGGCTCCTACGCAT 353
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 297 GATCAATATATTTACCGTCACGCTAATGGTTTGTGTGTAATTGGATTGGCTCCTACGCAT 356
Query 354 ATAGCTTTTAAGGATGAAGGTGGAATCACTAACGTCGATTTCAATGTCGGTAAGTCTGAT 413
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 357 ATAGCTTTTAAGGATGAAGGTGGAATCACTAGTGTCGATTTCAATGTTGGTAAGTCTGAT 416
Query 414 CGTAGCGTCTTGAAAGTCTCCGGCAAGCGTAAAAAGAATGCGTTGCGCTCTGAATCGAAT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CGTAGCGTCTTGAAAGTCTCCGGCAAGCGTAAAAAGAATGCGTTGCGCTCTGAATCGAAT 476
Query 474 ACAGCATTGTGCAAAGTTTCCACTGCAAAAGATTCCTACATTGTGAGGTGCTGCGTTAAA 533
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 477 ACAGCATTGTGCAAAGTTTCCACTGCAAAAGATACTTACATTGTTAGGTGCTGCGTTAAA 536
Query 534 GGCTCTCTCTTGGAGGTCAACGAGAGATTAATTAAGCAACCAGAGCTTCTTAATTCATCG 593
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 537 GGCTCTCTCTTGGAGGTCAACGAGAGATTGATTAAGCAACCAGAGCTTCTTAATTCAACG 596
Query 594 GCTGACCGGGAAGGGTATATTGCGATAATCATGCCAAGACCTTCAGATTGGACCAAAAAC 653
|||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 597 GCTGACCGCGAAGGGTATATTGCGATAATTATGCCAAGACCTGCAGATTGGACCAAAAAC 656
Query 654 AAGGAATCACTGATAACTCTGGAGGAATATAAACAAAAGAAAGAAAT-TCCTTTATGATC 712
||||| ||||||||||||||||||||||||||| ||||||||||||| || |||||||||
Sbjct 657 AAGGAGTCACTGATAACTCTGGAGGAATATAAAGAAAAGAAAGAAATGTC-TTTATGATC 715
Query 713 TGATGCAGATGATGATTAGGGCCATTAGGCTTAAGTCAGATTAGGTTGA-GTATTTTGAA 771
||| || |||||||||||||||| |||||| ||||||| ||| ||| || | | ||||||
Sbjct 716 TGAAGCTGATGATGATTAGGGCCGTTAGGCATAAGTCAAATTTGGT-GAAGAACTTTGAA 774
Query 772 GCTCTTTTGCGGTCTAATCTGTT-GAAGGTCTACAATATTT-TGA-CTGTTGTGTTGTGT 828
| |||||||| |||||||| ||| |||| |||||||||||| | | ||||||||||||||
Sbjct 775 GGTCTTTTGCAGTCTAATC-GTTTGAAGCTCTACAATATTTATCAACTGTTGTGTTGTGT 833
Query 829 TTTGGCTGACAAAA-TAATTTTGG--G---T-C--T-----AATGTTCTTCATGAAACCT 874
|||||||||||||| || ||||| | | | | |||||||||||||||||||
Sbjct 834 TTTGGCTGACAAAACTA-TTTTGCAAGCAATACAATTTTGCAATGTTCTTCATGAAACCT 892
Query 875 TTTTACTTTCCTGTACCAGAAAACACGAGATTAC 908
|||||| || ||||| ||||||||||||| |||
Sbjct 893 TTTTACATTGCTGTATTAGAAAACACGAGACTAC 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44356751801
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5