BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476749
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75990.1 | Symbols: | PAM domain (PCI/PINT associated modul... 2196 0.0
> AT1G75990.1 | Symbols: | PAM domain (PCI/PINT associated module)
protein | chr1:28524493-28526776 REVERSE LENGTH=1652
Length=1652
Score = 2196 bits (1189), Expect = 0.0
Identities = 1382/1477 (94%), Gaps = 6/1477 (0%)
Strand=Plus/Plus
Query 1 AAAAAGATGACTCAAGACGTAGAGATGAAAGATAATCAAACCCCAA-GTCAATCCGTCGT 59
|||||||||||||| |||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 53 AAAAAGATGACTCAGGACGTAGAGATGAAAGATAACCAAACCCCAACG-CAATCCGTCGT 111
Query 60 CTCTGCTCCTACCTCCACGCTACAGAATTTGAAGGAGATTGCAGCTCTGATTGATACCGG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 112 CTCTGCTCCTACCTCCACGCTACAGAATTTGAAGGAGATTGCAGCTCTGATTGATACTGG 171
Query 120 ATCTTATACCAAGGAAGTCCGCCGTATTGCTCGTGCTGTGCGTCTCACCGTAGGACTACG 179
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 172 ATCTTATACAAAGGAAGTCCGTCGTATTGCTCGTGCTGTGCGTCTCACCGTTGGACTACG 231
Query 180 ACGGCAGCTCACTGGTTCCGTGATCTCTTCGTTCCTTGATTTCGCTTTGGTTCCTGGATC 239
| || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 232 AAGGAAGCTCACGGGTTCCGTGATCTCTTCTTTCCTTGATTTCGCTTTGGTTCCTGGATC 291
Query 240 TGAAGCTCATACTCGTCTTTCTTCTTTCGTTCCCAAAAGTGATGAACATGACATGGAAGT 299
||||||||| |||||||| |||||||| || || || |||||||||||||||||||||||
Sbjct 292 TGAAGCTCACACTCGTCTCTCTTCTTTTGTGCCGAAGAGTGATGAACATGACATGGAAGT 351
Query 300 CGATACAGCATCATCTACTTCTCAAGCTCCTCCTAAGCATTTACCCGCTGAGCTCGAGAT 359
|||||||||||||| | ||| |||||||||||||||||| |||| || |||||||||||
Sbjct 352 TGATACAGCATCATCGAATTCCCAAGCTCCTCCTAAGCATCTACCTGCAGAGCTCGAGAT 411
Query 360 TTACTGCTACTTCATTGTTCTCCTTTTTCTCATTGATCAGAAAAAGTACAGCGAGGCCAA 419
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 412 TTACTGCTACTTCATTGTTCTTCTTTTTCTCATTGATCAGAAAAAGTACAACGAGGCCAA 471
Query 420 AGCTTGTTCTTCAGCTAGCATTGCTCGCCTCAAAAACGTTAACAGGAGAACCGTTGATGT 479
|| ||||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 472 AGTTTGTTCTACCGCTAGCATTGCTCGCCTCAAAAGCGTAAACAGGAGAACCGTTGATGT 531
Query 480 CATTGCTTCGAAATTGTATTTTTACTACTCTTTAAGCTACGAGCTGACAAATGATCTTGC 539
||||||||| |||||||||||||||||||| ||||| |||||||| || |||||||||||
Sbjct 532 CATTGCTTCCAAATTGTATTTTTACTACTCCTTAAGTTACGAGCTAACTAATGATCTTGC 591
Query 540 AGAGATACGTAGTACTCTTCTTGCTCTTCACCATTCGGCGACACTCCGCCATGACGAACT 599
||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| |
Sbjct 592 AGAGATACGTAGTACTCTTCTTGCTCTTCACCATTCGGCCACACTGCGCCACGACGAATT 651
Query 600 GGGCCAGGAAACACTTTTGAATCTGTTGCTTCGCAACTATCTTCACTACAACCTCTACGA 659
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 652 GGGCCAGGAAACACTTTTGAATCTGTTGCTTCGCAATTATCTACACTACAACCTGTACGA 711
Query 660 CCAAGCAGAGAAGTTGAGATCTAAAGCACCTCGATTTGAGGCACACTCTAACCAACAGTT 719
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 712 CCAAGCAGAGAAGTTGAGATCAAAAGCGCCTCGATTTGAGGCACACTCTAACCAACAGTT 771
Query 720 TTGTAGGTACCTGTTTTAC-TTGGGGAAGATCCGGACGATTCAACTAGAGTACACCGATG 778
|||||||||| |||||||| |||| |||||| ||||||||||||| |||||||||||||
Sbjct 772 TTGTAGGTACTTGTTTTACCTTGGC-AAGATCAGGACGATTCAACTTGAGTACACCGATG 830
Query 779 CAAAAGAGAGCCTTCTCCAAGCTGCTAGGAAAGCACCTGTTGCATCTTTGGGCTTCAGAA 838
|||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 831 CAAAAGAGAGTCTCCTCCAAGCTGCTAGGAAAGCACCTGTTGCATCTCTGGGATTCAGAA 890
Query 839 TTCAGTGCAACAAGTGGGCTATTATAGTTCGGCTGTTGTTGGGTGAAATACCAGAACGGT 898
| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 891 TCCAGTGCAACAAGTGGGCTATCATAGTTCGGCTGTTGTTGGGTGAAATACCTGAACGAT 950
Query 899 CAATCTTCACTCAGAAGGGAATGGAGAAGCCTCTGAAGCCATACTTTGAGCTTACCAATG 958
| |||||||||||||| |||||||||||| |||| | |||||| |||||||| ||||| |
Sbjct 951 CTATCTTCACTCAGAAAGGAATGGAGAAGACTCTTAGGCCATATTTTGAGCTGACCAACG 1010
Query 959 CTGTGAGAATTGGTGACTTGGAGCTGTTTGGGAATGTCCAAGAGAAGTTTGC-AGAAACA 1017
|||||||||||||||||||||||||||| ||||| |||||||||||||||| | |||||
Sbjct 1011 CTGTGAGAATTGGTGACTTGGAGCTGTTCGGGAAAATCCAAGAGAAGTTTGCCA-AAACA 1069
Query 1018 TTTGCGAAAGACAGGACTCACAACCTCATAGTTAGACTCCGACACAACGTGATCAGAACA 1077
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1070 TTTGCGGAAGACAGGACTCACAACCTCATAGTCAGACTCCGACACAACGTGATCAGAACA 1129
Query 1078 GGACTGCGCAACATCAGCATTTCCTACTCCAGAATCTCTCTGCAGGACGTTGCACAAAAG 1137
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1130 GGACTGCGCAACATCAGCATTTCCTACTCCAGAATCTCTCTACAGGATGTTGCTCAAAAG 1189
Query 1138 CTAAGACTGAACTCAGCGAACCCAGTGGCTGATGCAGAAAGCATTGTGGCTAAAGCCATT 1197
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1190 CTGAGACTGAACTCAGCGAACCCAGTGGCTGATGCAGAAAGCATCGTCGCTAAAGCCATT 1249
Query 1198 AGAGATGGAGCAATCGACGCAACCATCGACCACAAGAACGGCTGTATGGTCTCCAAGGAA 1257
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1250 AGAGATGGAGCAATCGACGCAACCATCGACCACAAGAACGGTTGTATGGTCTCCAAGGAA 1309
Query 1258 ACAGGAGACATCTACTCCACTAACGAACCGCAGACTGCGTTTAACTCGAGGATTGCGTTC 1317
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1310 ACAGGAGACATCTACTCCACTAATGAACCACAGACTGCGTTTAACTCGAGGATTGCCTTC 1369
Query 1318 TGTTTGAATATGCACAATGAAGCAGTTAGAGCGTTGAGGTTCCCGCCAAACACGCACAAG 1377
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 1370 TGTTTGAATATGCACAATGAAGCGGTTAGAGCACTGAGGTTCCCGCCAAACACGCACAGG 1429
Query 1378 GAGAAAGAAAGCGACGAGAAAAGGAGGGAGAAGAAACAGCAAGAAGAGGAGCTAGCTAAA 1437
|||||||| ||||| |||||||| ||||||| ||||||||||||||||||||| ||||||
Sbjct 1430 GAGAAAGAGAGCGAGGAGAAAAGAAGGGAGATGAAACAGCAAGAAGAGGAGCTCGCTAAA 1489
Query 1438 TACATGGCTGAAGAAGACGATGATGATTTCTAGATTT 1474
||||||||||| |||||||||||||||||||||||||
Sbjct 1490 TACATGGCTGAGGAAGACGATGATGATTTCTAGATTT 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72690389160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5