BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476757
Length=562
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76060.1 | Symbols: EMB1793 | LYR family of Fe/S cluster bio... 785 0.0
> AT1G76060.1 | Symbols: EMB1793 | LYR family of Fe/S cluster biogenesis
protein | chr1:28543100-28543850 REVERSE LENGTH=751
Length=751
Score = 785 bits (425), Expect = 0.0
Identities = 504/542 (93%), Gaps = 5/542 (1%)
Strand=Plus/Plus
Query 1 GAGAGAAATGATGGCTACGAAGCTTCAGAAATGGCGAAATCTGGCCGGTCGTCTAGATCT 60
|||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 4 GAGAGAGATGATGGCTGCGAAGCTTCAGAAATGGCGAAATCTGGCAGGTCGTCTAGATCT 63
Query 61 GATGTCTCGGAGAGATGCTGTATCGTCGAGGC-GTCTCTTGCACGAAGGTCCAGACACCG 119
|||| |||||| | ||||| ||| |||||| || || |||||||||||||||| ||||
Sbjct 64 GATGAATCGGAGCGGCGCTGTGTCGACGAGGCGGT-TCCTGCACGAAGGTCCAGATACCG 122
Query 120 TGGAGGAGCTTCTCGATAGACATCTAGCGAAGAAAGAGAAACCAATTATCGA-CGACGAT 178
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 123 TGGAGGAGCTTCTCGAAAGACATCTAGCGAAGAAAGAGAAACCAATAATCGATC-ACGAT 181
Query 179 GAGGCCGAGTTTCTGAACAGGCGGCGTCTGACGAGCACGCGCCGGGAAGCGTTGAGTTTG 238
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 182 GAGGCTGAGTTTCTGAATAGACGGCGTCTGACGAGCACGCGCCGGGAAGCGTTGAGTTTG 241
Query 239 TACAGAGACATATTACGAGCGACTCGGTTCTTCACATGGACTGATTCCAGGGGAAATCTG 298
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct 242 TACAGAGACATATTACGAGCGACTCGGTTCTTCACGTGGATTGATTCCAGGGGAAATTTA 301
Query 299 TGGAGGGACGTGTTGAGAGAGAACGCGAGGAAGGAGTTTGAAGCGGCGCGATTTGAGACG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TGGAGGGACGTGTTGAGAGAGAACGCGAGGAAGGAGTTTGAAGCGGCGCGATTTGAGACG 361
Query 359 GATCCGGAGGTTATCACAAGGCTTCTGATCGGTGGAAGCGACGCCGTTTCGTCTGCTTTA 418
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 362 GATCCGGAGGTTATCACAAGGCTTCTGATAGGTGGAAGCGACGCCGTTTCGTCTGCTTTA 421
Query 419 GATAAGCTCGCGGAGAAGCAAAGGGAGATGATCGAGAAAAAACGCCGTGGTGATCAACCC 478
|||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||| |
Sbjct 422 GATAAGCTTGCGGAGAAGCAAAGAGAGATGATTGAGAAACAACGCCGTGGTGATCAACGC 481
Query 479 TGAATTGACGGATCATAGGACATGAATGTTTCAACCGAATGATCCTTTTGAGTTTAAAGT 538
||| ||||||||||||||| ||||||||||||||| ||||||| | | |||||||||||
Sbjct 482 TGATTTGACGGATCATAGGGCATGAATGTTTCAACAGAATGATTCATC-GAGTTTAAAGT 540
Query 539 GG 540
||
Sbjct 541 GG 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26975736939
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5