BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476758
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76070.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1502 0.0
> AT1G76070.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 8 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis,
petal differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G20310.1);
Has 66 Blast hits to 66 proteins in 15 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 64; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28546382-28547611
FORWARD LENGTH=1230
Length=1230
Score = 1502 bits (813), Expect = 0.0
Identities = 977/1052 (93%), Gaps = 27/1052 (3%)
Strand=Plus/Plus
Query 1 ATTTTATAAAGTCGGCCGTATAAACACAAAGGTCTAGCTTCCTCCTTTTTA--ACTCACA 58
||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct 22 ATTTTATAAAGTCGGCCGTATAAACACAAAGGTCTTTCTTCTTCCTTTTTAGCTCTCACA 81
Query 59 TTTGACCAAAACTCCTCCAATCCAGGCACTCATCGTTGACTTTTTCAAACTCATTTCCTC 118
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 82 TTTGACCAAAACTCCTCCAATCCAGGCA-TCATCGTTGACTTTTTCAAACTCATTTCCTC 140
Query 119 TCTTTTTCCTTCTTCTCACATCATTA-TAGA-CCAAACAT-AAAA-AAC-CAGAATCCTC 173
||||||||||||||||||||||| || |||| |||||||| |||| ||| |||||||||
Sbjct 141 TCTTTTTCCTTCTTCTCACATCA-TATTAGACCCAAACATAAAAAGAACGAAGAATCCTC 199
Query 174 TGTTCTTGTCTGCGAATTTTGCTGTTGTGATCATCGATGGACATTAAACATCATACTTCG 233
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 200 TGTTCTTGTCTGCGAATTTTGCTGTTGTGATCAGCGATGGACATTAAGCATCATACTTCA 259
Query 234 ACTTCAAAACCTAAGAACAAGAACAAGCTTTTGAAGATGCTTCCTAAAGCTATGTCGTTT 293
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 260 ACTTCAAAACCTAAGAACAAGAACAAGCTTTTGAAGATGCTTCCTAAAGCGATGTCGTTT 319
Query 294 GGACATCGTGTTCCACCGTTTAGTCCCGGAAGAGATCTCCACCACAACCACAACCACCAC 353
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 320 GGACATCGAGTTCCACCGTTTAGTCCCGGAAGAGATCTCCACCAC-A--ACAACCACCAT 376
Query 354 AATAACACGGCGGCTAACAAAATGTTTTTCTCTGGTCCTATGGTTCCTTTGGTTCCTAAC 413
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 377 AATTACACGGCGGCTAACAAAATGTTTTTCTCTGGTCCTATGGTTCCTTTGGTACCTAAC 436
Query 414 GCGGCTCGGGTAAGAAGAAACAAAAGCGACGCTGTTTGGGACGAACCTACTTCACCTAAA 473
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 GCGGCTCGGGTTAGAAGAAACAAAAGCGACGCTGTTTGGGACGAACCTACTTCACCTAAA 496
Query 474 GTCTCTTGTATCGGTCAGATCAAGCTTGGTAAGTCTAAATGTCCCA-CCGGTAAAAAGAA 532
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 497 GTCTCTTGTATCGGTCAGATCAAGCTTGGTAAGTCTAAATG-CCCAACCGGTAAAAAGAA 555
Query 533 CAAGAACAAAACAACTCCGTCGT-TGATTCCTAAAATCTCCAAAACCTCAACGTCGTCTT 591
||| | || | || | || | |||||||||||||||||||||| |||||||||||||
Sbjct 556 CAA-AGCA---C--CTTCATC-TCTGATTCCTAAAATCTCCAAAACGTCAACGTCGTCTT 608
Query 592 TAACCAAAGAAGATGAAAAAGGTCGTCTTTCGAAGATCAAGCGTATCTTCTCGTTCTCGT 651
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 609 TAACAAAAGAAGATGAAAAAGGTCGTCTTTCGAAGATCAAGAGTATCTTCTCGTTCTCGC 668
Query 652 CGGCGAGTGGAGGAAACATATCAAGAAAATCTCATCCCACCGCCGTATCCGCCGCGGGTG 711
||||||||||| |||||| |||||||||||| ||||| |||||||| |||||||||| ||
Sbjct 669 CGGCGAGTGGACGAAACACATCAAGAAAATCCCATCCTACCGCCGTCTCCGCCGCGGATG 728
Query 712 AACATCCTGTTACGGTGGTTTCCACCGCGGCGGTGCCTTCCTTAGGTCAGATGAAGAAAT 771
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 729 AACATCCAGTTACGGTGGTTTCCACCGCGGCGGTGCCTTCGTTAGGTCAGATGAAGAAAT 788
Query 772 TCGCAAGCAGCCGTGATGCTTTAGGTGGATTT-GATTGGACGGTTGAGATGAAACATGAT 830
|||| ||||| |||||||||||||||| |||| |||||| |||||||||||||||||||
Sbjct 789 TCGCTAGCAGTCGTGATGCTTTAGGTG-ATTTTGATTGGGCGGTTGAGATGAAACATGAA 847
Query 831 GAAGAATC-CCCGGCTGATCATCGCCGTGGTTACTATTCCGACGACGAGAAGAGAGGAGC 889
|||||||| |||| ||||||||| ||||||||||||||| |||||||| | ||||||||
Sbjct 848 GAAGAATCACCCG-CTGATCATCACCGTGGTTACTATTCTGACGACGACACCAGAGGAGC 906
Query 890 TTACTTTAGAGACGACGATGACGACGATGAAGACGACATAATTATCCCGTTCTCAGCTCC 949
|||||| ||| |||| |||||||| |||||||| |||||||| ||||| || ||||||||
Sbjct 907 TTACTTGAGATACGATGATGACGAGGATGAAGATGACATAATAATCCCTTTTTCAGCTCC 966
Query 950 TTTAGGGTTAAAACCAAAGAAAGAAGTTAACTTATGGAAGAGAAGAACCATGGATCCACC 1009
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 967 TTTAGGGTTAAAACCAAAGAAAGAAGTTAACTTGTGGAAGAGAAGAACCATGGATCCACC 1026
Query 1010 AAAACCACTTCATCTTCAAACCACTTGAATTA 1041
||||||||||||||||||||||| |||| |||
Sbjct 1027 AAAACCACTTCATCTTCAAACCATTTGA-TTA 1057
Score = 97.1 bits (52), Expect = 3e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1037 AATTACTGCAGTTCAAATTGTATAATGATCATCATTCACAATGAATCTGGATTTT 1091
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1085 AATTACTGCAGTTCAAATTGTATAATGATCATCATTCACAATGAGTCTGGATTTT 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55973607675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5