BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476762
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76120.1 | Symbols: | Pseudouridine synthase family protein... 2161 0.0
AT1G20370.1 | Symbols: | Pseudouridine synthase family protein... 346 4e-94
> AT1G76120.1 | Symbols: | Pseudouridine synthase family protein
| chr1:28558670-28560473 REVERSE LENGTH=1714
Length=1714
Score = 2161 bits (1170), Expect = 0.0
Identities = 1414/1528 (93%), Gaps = 32/1528 (2%)
Strand=Plus/Plus
Query 1 TCGTCTTCTAGGGTTTTGACTTTTGTTCGGTAGCCATTAACGTAGTTGCAGAGGAAAGCT 60
|||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1 TCGTCTTCAAGGGTTTCGACTTTTGTGCGGTAGCCATTAACGTTGTTGCAGAGGAAAGCT 60
Query 61 GGAAAATAGAGAGTTCGATGAACTCACACCACTATAATGGAGGCTCAGGAGTTTGAAAAC 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GGAAAATAGAGAGTTCGATGAACTCTTGTTACTATAATGGAGGCTCAGGAGTTTGAAAAC 120
Query 121 CGAGAGATTTTCCCCGGTTCGAGGTTCCTGATCGTGAATCAGATCAGAAGAAGCTCAAAA 180
|||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||| |
Sbjct 121 CGAGAGATTTCCCCCGGTTCGAGGTTCCTGATTGAGAATCAGATCAGAAGTAGCTCAATA 180
Query 181 TGTTGACCACCACCACCGATGAGGAAACAGACATGTCCTGCGGCGGAGGTGGCACGGAGC 240
||||||| || |||||||||||||||| |||| ||||||||| |||||||| ||||||||
Sbjct 181 TGTTGACAACTACCACCGATGAGGAAATAGACTTGTCCTGCGACGGAGGTGTCACGGAGC 240
Query 241 CTCAAAAAGTTGCTATAATCTTTGCCTTTTGCGGTGTAGGATACCAAGGGATGCAAAAGA 300
|||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||
Sbjct 241 CTCAAAAAGTTGCTATAATCTTCGCGTTTTGTGGTGTAGGATACCAAGGAATGCAAAAGA 300
Query 301 ATCCCGGCGCCAAAACCATTGAAGGCGAGCTAGAAGAAGCTCTGTTCCATGCCGGAGCTG 360
|||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct 301 ATCCCGGCGCGAAAACCATTGAAGGCGAGCTCGAAGAAGCTTTGTTTCATGCCGGAGCTG 360
Query 361 TACCAGAGTCCATTAGAGGCAAGCCAAAACTATACGATTTCGCACGATCGGCACGGACCG 420
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 361 TACCGGAGTCCATTAGAGGCAAGCCAAAACTATACGATTTCGCACGATCTGCACGGACAG 420
Query 421 ATAAAGGAGTTAGTGCTGTGGGACAAGTAGTTTCCGGTCGATTCAACGTTGATCCACCTG 480
||||||||||||||||||| |||||||||||||| ||||| || | ||||||||||| ||
Sbjct 421 ATAAAGGAGTTAGTGCTGTTGGACAAGTAGTTTCAGGTCGCTTTATCGTTGATCCACTTG 480
Query 481 GATTCGTGGATCGTCTCAATTCAAATCTCCCTAATCAGATTAGGATCTTCGGGTATAAGC 540
|||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 481 GATTCGTGAATCGTCTCAATTCAAATCTCCCTAATCAGATTAGAATCTTCGGTTACAAGC 540
Query 541 ATGTTACGCCGTCGTTTAGCTCCAAAAAGTTCTGCGATCGAAGAAGGTATGTGTATCTGC 600
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 541 ATGTAACGCCGTCGTTTAGCTCCAAGAAGTTTTGCGATCGAAGAAGGTATGTGTATCTGC 600
Query 601 TTCCAGTGTTTGCTCTTGATCCAATCTCGCATCGTGATAGAGAAACAGTAATGGCTAGTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCCAGTGTTTGCTCTTGATCCAATCTCGCATCGTGATAGAGAAACAGTAATGGCTAGTT 660
Query 661 TGGGTCCAGGAGAGGAATATGTTAAGTGTTTTGAGTGCTCGGAGAGAGGTCGTAAGATTC 720
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 661 TGGGTCCGGGAGAGGAATATGTTAAGTGCTTTGAGTGCTCAGAGAGAGGTCGTAAGATTC 720
Query 721 C---AGGTCTTGTGGGTAATTGGAAAGGTACCAACTTTGTTACTAAATCATTGGATTTTC 777
| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 721 CTCCAGGTCTTGTGGGTAAATGGAAAGGTACCAACTTTGGGACTAAATCATTGGATTTTC 780
Query 778 AGTCAGACATTTTGTCGAACAACTCTAGTGCATTTAGAACTGATGTCAAGATTGAAGCTT 837
|||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 781 AGTCAGACATTTCGTCGAACAACTCTAGTGCATTAAGAAGTGACATCAAGATTGAAGCTT 840
Query 838 TGAGTTCTAATTTGGCTAGCTTAAGCTCAGTAGATGTTGAAGTAGGTAGTATACAAGAAG 897
||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 841 TGAGTTCTAATTTAGCTGGCTTATGCTCAGTAGATGTTGAAGTAGGTAGGATACAAGAAG 900
Query 898 ACAGTTGTAAATTGAATACAAATTCAGCAGAGAAGATCAATGGAGAAGGAAATGTGATGG 957
|||||||||||||||||||||||||| |||||| | | | | || || | |
Sbjct 901 ACAGTTGTAAATTGAATACAAATTCATCAGAGA----C--T--A-A-GGTAA----A-G- 944
Query 958 CTGAGACAAAGAGCAAGTTTTGTTATGGTGAAAAGGAAAAGGAAAGGTTCAATAGAATAC 1017
|| ||| | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 945 ---AG-CAA-G------TTTTGTTATGGTGAAAAGGAAAAGGAAAGGTTCAGTAGAATAC 993
Query 1018 TAAGTTGTTATGTTGGATCATATAATTTCCATAACTTCACTACAAGAACAAAAGCAGATG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 TAAGTTGTTATGTTGGATCATATAATTTCCATAACTTCACTACAAGAACAAAAGCAGATG 1053
Query 1078 ATCCGGCTGCGAATCGTCAAATCATCTCCTTCACTGCTAAAACTGTTATCAATCTTGATG 1137
||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1054 ATCCGACTGCGAATCGTCAAATCATCTCCTTCACTGCTAATACTGTGATTAATCTTGATG 1113
Query 1138 GGATTGACTTTATTAAGTGTGAAGTCTTAGGCAAAAGCTTTATGCTTCATCAGATTCGAA 1197
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1114 GGATTGACTTTATCAAGTGTGAAGTCTTAGGCAAAAGCTTTATGCTTCATCAGATTCGGA 1173
Query 1198 AGATGATGGGTCTTGCTGTTGCAATCATGAGGAATTGTGCTTCTGAATCACTTATCCAGA 1257
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1174 AGATGATGGGTCTTGCTGTTGCAATCATGCGGAATTGTGCTTCTGAATCACTTATCCAAA 1233
Query 1258 CTGCTTTCAGCAAGGATGTGAATATAACTGTACCAATGGCGCCTGAAGTTGGACTCTACC 1317
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 1234 GTGCTTTCAGCAAGGATGTGAATATAACTGTACCAATGGCGCCAGAAGTTGGACTTTATC 1293
Query 1318 TCGACGAATGCTTCTTTACGTCTTATAAC-GAAAAATTTGAAGACAGTCATGAAGAAGTG 1376
| |||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1294 TGGACGAATGCTTCTTCACGTCTTATAACAGAAAC-TTTGAAGACAGTCATGAAGAAGTG 1352
Query 1377 TCCATGGAAGCATACAAAGAAGAAGCTGAAGCATTCAAATTGAAGCATATTTATCCTCAT 1436
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1353 TCCATGGAAGCATACAAAGAAGAAGCTGAAGCATTCAAATTGAAGCATATCTATTCTCAT 1412
Query 1437 ATCTGCGCTACAGAGCGAAAATATGGAAATATGGCTCTTTGGTTACATTCCTTGAACTAT 1496
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1413 ATCGGCGCTACAGAGCGAAAATACGGAAATATGGCTCTTTGGTTACATTCCTTGAACTAT 1472
Query 1497 AGAAACTATCCAGACCTAAATTTTGGCA 1524
|||||||||||||||||||| |||||||
Sbjct 1473 AGAAACTATCCAGACCTAAACTTTGGCA 1500
Score = 93.5 bits (50), Expect = 6e-18
Identities = 84/98 (86%), Gaps = 11/98 (11%)
Strand=Plus/Plus
Query 1525 TCTCTAAGCAAAATGATGGAAGCTTAGTTTGAAGAT-----CATTGTTTTTGTTCTTGTT 1579
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1565 TCTCTAAGCAAAATGATGGAAGCTTAGTTTGAAGATTTTGACATTGTTTTTGTTATTGTT 1624
Query 1580 GGTTAA-CT-ATTC-TTTCTTGTTAACTTTTTAATCAA 1614
|||||| | | | ||| |||| ||||||||||||||
Sbjct 1625 GGTTAATCCCAC-CATTT-TTGT-AACTTTTTAATCAA 1659
> AT1G20370.1 | Symbols: | Pseudouridine synthase family protein
| chr1:7051577-7053641 REVERSE LENGTH=1972
Length=1972
Score = 346 bits (187), Expect = 4e-94
Identities = 470/602 (78%), Gaps = 38/602 (6%)
Strand=Plus/Plus
Query 261 TTTGCCTTTTGCGGTGTAGGATACCAAGGG-ATGCAAAAGAATCCCGGCGCCAAAACCAT 319
||||| || ||||| ||||| || | |||| |||||||||||||||||||||||||||||
Sbjct 243 TTTGCGTTCTGCGGAGTAGGGTATC-AGGGAATGCAAAAGAATCCCGGCGCCAAAACCAT 301
Query 320 TGAAGGCGAGCTAGAAGAAGCTCTGTTCCATGCCGGAGCTGTACCAGA-G-TCCATTAGA 377
|||||||||||| ||||| ||| |||||||||||||||| ||||| || | | || ||
Sbjct 302 TGAAGGCGAGCTCGAAGAGGCTTTGTTCCATGCCGGAGCAGTACCTGATGCTG-ATCGGA 360
Query 378 GGCAAGCCAA-AACTATACGATTTCGCACGATCGGC-ACGGACCGATAAAGGAGTTAGTG 435
||| |||| || | ||||| | |||||||| || | | || ||||||||||| ||||
Sbjct 361 A-CAAACCAAGAAAT-TACGAATGGGCACGATCCGCTA-GAACTGATAAAGGAGTGAGTG 417
Query 436 CTGTGGGACAAGTAGTTTCCGGTCGATTCAACGTTGATCCACCTGGATTCGTGGATCGTC 495
| ||||||||||| ||||| ||||| ||| | |||||||| |||||||| ||||| || |
Sbjct 418 CGGTGGGACAAGTGGTTTCTGGTCGTTTCTATGTTGATCCGCCTGGATTTGTGGAGCGGC 477
Query 496 TCAATTCAAATCTCCCTAATCAGATTAG-GATCTTCGGGTATAAGCATGTTACGCCGTCG 554
||||||| || |||||| |||||||| | | | || ||||| |||| |||| | ||||||
Sbjct 478 TCAATTCGAAGCTCCCTGATCAGATTCGTG-TGTTTGGGTACAAGCGTGTTGCACCGTCG 536
Query 555 TTTAGCTCCAAAAAGTTCTGCGATCGAAGAAGGTATGTGTATCTGCTTCCAGTGTTTGCT 614
|||||||||||||| ||||| ||||| || |||||||||||||| | || || ||||||
Sbjct 537 TTTAGCTCCAAAAAATTCTGTGATCGGAGGAGGTATGTGTATCTAATCCCGGTTTTTGCT 596
Query 615 CTTG-ATCCAATCTCGCATCGTGATAGAGAAACAGTA-ATGGCTAGTTTGGGTCCAGGAG 672
||| ||||| | || | | || | || | | | | |||| ||| || | |||
Sbjct 597 -TTGGATCCA-TG-CGTA-CATGGT-GA-AG-CTG-AGATGGTTAGAACGGATTTAGGTT 648
Query 673 AGGAATATGTTAAGTGTTTTGAGTGCTCGGAGAGAGG-TCGTAAGATTCCAGGTCTTGTG 731
| |||||||| || ||| | |||||||| |||| ||| | |||||||||| |||| |
Sbjct 649 ACGAATATGTCAAATGTGTAGAGTGCTCTGAGAAAGGCTA-TAAGATTCCA---CTTG-G 703
Query 732 GGTAATTGG-AAAGGTACCAACT-TTGT--TACTAAATCATTGGATTTTCAGTCAGACAT 787
|| || || |||| || | | |||| ||| ||||||||||| |||||||||||||
Sbjct 704 TGTTATGGGTAAAGACACTGATTGTTGTGATACAAAATCATTGGAGATTCAGTCAGACAT 763
Query 788 TTTGTCGAACAACTCT-AGTGCATTTAGAA-CTGATGTCAAGAT-TGAAGCTTTGAGTTC 844
|| ||||| || || | | |||| | || | ||||||||||| | |||| ||||||| ||
Sbjct 764 TTCGTCGAGCACCTGTGA-TGCAAT-AGGAGCTGATGTCAAG-TGTGAAACTTTGAGCTC 820
Query 845 TA 846
||
Sbjct 821 TA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81124080720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5