BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476769
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76170.1 | Symbols: | 2-thiocytidine tRNA biosynthesis prot... 1629 0.0
AT2G44270.2 | Symbols: ROL5 | repressor of lrx1 | chr2:18297861... 1105 0.0
> AT1G76170.1 | Symbols: | 2-thiocytidine tRNA biosynthesis protein,
TtcA | chr1:28584039-28586225 REVERSE LENGTH=1139
Length=1139
Score = 1629 bits (882), Expect = 0.0
Identities = 1012/1075 (94%), Gaps = 7/1075 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGCAGGCGAAGGGAAGAGCAAGAAAGCAGGAGGAGAGTGTTTCTATGAGGTTTTT 60
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGCAGGGGAAGAGAAGAGCAAGAAAGCAGGAGGAGAGTGTTTCTATGAGGTTTTT 60
Query 61 GAGGAAGAGATTCACCATGTCATTGTTGGGAATCGTTTATTTAAGTCCGGTGAGCGAGTT 120
||||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||||||
Sbjct 61 GAGGAAGAGATTCACCAAGTCATTGTTGGGAATCGTTTGTTTAAGTTCGGTGAACGAGTT 120
Query 121 GCTATAGGTGCTTCCGGTGGAAAAGATTCGACAGTGCTGGCATATGTATTATCAGAACTA 180
||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 121 GCTATAGGTGCCTCCGGTGGAAAAGATTCTTCAGTGCTGGCATATGTGTTATCAGAACTA 180
Query 181 AATAGACGTCACAATTACGGGCTGGATCTTTTTCTTTTGTCTATTGATGAAGGGATAACG 240
|| |||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 181 AACAGACGTCACAGTTACGGACTCGATCTTTTTCTTTTGTCTATTGATGAAGGGATAACG 240
Query 241 GGTTATCGTGATGATTCTCTCGAGACTGTTAAAAGGAACGAGGTTCAATATGGGTTGCCT 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 GGTTATCGTGATGATTCTCTCGAGACTGTTAAAAGGAACGAAGTTCAATATGGATTGCCT 300
Query 301 CTTCAGATTGTTTCATACAAAGATCTGTATGGATGGACAATGGACGAGATTGTGAAGATG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTCAGATTGTTTCATACAAAGATCTGTATGGATGGACAATGGACGAGATTGTGAAGATG 360
Query 361 ATCGGTTTGAAGAACAATTGCACCTTTTGTGGTGTATTTCGTAGACAGGCACTTGATCGA 420
|||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 361 ATCGGTTTGAAGAACAATTGCACCTTCTGTGGTGTATTCCGTCGACAGGCACTTGATCGA 420
Query 421 GGAGCTGCATTATTGAAAGTAGATAAGCTAGTCACTGGACATAATGCAGATGATATAGCG 480
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGAGCTGCGTTATTGAAAGTAGATAAGCTAGTCACTGGACATAATGCAGATGATATAGCC 480
Query 481 GAAACAGTTCTCTTAAACATACTGCGAGGGGATATCGCTAGATTGAGTAGGTGCACATCA 540
||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 481 GAAACAGTTGTCTTAAACATACTGCGAGGCGATATTGCTAGATTGAGTAGGTGCACATCA 540
Query 541 ATCACTACTGGCGAAGATGGTCCAATTCCAAGATGTAAACCTTTCAAATATACATATGAG 600
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 ATCACTACAGGCGAAGATGGTCCAATTCCAAGATGTAAACCTTTCAAATATACATACGAG 600
Query 601 AAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTGGACTACTTCTCCACCGAATGCATA 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 AAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTGGACTACTTCTCCACTGAATGCATA 660
Query 661 TACTCTCCTAATGCTTATCGTGGGTTTGC-TCGTGAGTTCATCAAAGATTTGGAACGACT 719
||||| ||||||||||||||||| || || | ||||||||||||| || |||||| ||||
Sbjct 661 TACTCCCCTAATGCTTATCGTGGATTCGCCT-GTGAGTTCATCAATGACTTGGAAAGACT 719
Query 720 AAGGCCAAGGGCTATTCTGGATATCATCAAATCTGGTGAAGACTTCAGAATTGCGACAAC 779
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 720 AAGGCCAAGGGCTATTCTGGATATCATCAAGTCAGGTGAAGACTTCAGAATTGCCACAAC 779
Query 780 CACGAAAATGCCTGAGCAAGGGACGTGTGAGCGATGTGGGTATATTTCTAGCCAGAAATG 839
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 CACGAAAATGCCTGAGCAAGGGACTTGTGAGCGATGTGGGTATATTTCTAGCCAGAAATG 839
Query 840 GTGCAAAGCTTGTGTTTTGTTGGAGGGATTGAACCGTGGTTTACCTAAGATGGGCATTGG 899
|||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct 840 GTGCAAAGCTTGTGTTTTGTTGGAAGGATTGAACCGTGGTCTGCCTAAGATGGGCATTGG 899
Query 900 AAGACCACGAGGAAGCGGAAATG---ATCAGAAGGACACAAAGGCTAGGTCTACTGCAAA 956
||||||| |||||| || ||||| || | ||||||| ||||||||| |||||||||||
Sbjct 900 AAGACCAAGAGGAAACGTAAATGGTGATTATAAGGACATAAAGGCTAGATCTACTGCAAA 959
Query 957 ATCTATAGAGAGCAAACAATGTGGATCTCTGGATTTCTAAACTAAAAGaaaaaaaCCAAA 1016
| ||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 960 AACTATAGAGAGCAAACAATGTGGATCTCTGGATTTCTAAATTAAGAGAAAAA--CCAAA 1017
Query 1017 ACTATGAGACTGCAATGGATGATGTGACAATTGCCAAACTGGTTCTGTATAGAAA 1071
|||||||||||||||||||| ||||| | ||||||||||| || ||||||||||
Sbjct 1018 GCTATGAGACTGCAATGGATGCTGTGATAGTTGCCAAACTGTTTTTGTATAGAAA 1072
> AT2G44270.2 | Symbols: ROL5 | repressor of lrx1 | chr2:18297861-18300273
REVERSE LENGTH=1414
Length=1414
Score = 1105 bits (598), Expect = 0.0
Identities = 853/971 (88%), Gaps = 37/971 (4%)
Strand=Plus/Plus
Query 38 GAGAGTG-TTTCTATGAGGTTTTTGAGGAAGAGATTCACCATGTCATTGTTGGGAATCGT 96
||||||| ||| ||||||||||||||||| |||||||| || ||||||||| |||||||
Sbjct 254 GAGAGTGCTTT-TATGAGGTTTTTGAGGAGGAGATTCATCAAGTCATTGTTCAGAATCGT 312
Query 97 TTATTTAAGTCCGGTGAGCGAGTTGCTATAGGTGCTTCCGGTGGAAAAGATTCGACAGTG 156
||||| || || ||||| || |||||||||||||| || |||||||||||||| || ||
Sbjct 313 TTATTCAAATCTGGTGAACGTGTTGCTATAGGTGCCTCTGGTGGAAAAGATTCTACTGTT 372
Query 157 CTGGCATATGTATTATCAGAACTAAATAGACGTCACAATTACGGGCTGGATCTTTTTCTT 216
||||||||||| |||||||||||||| ||||| |||||||| ||||| || || |||||
Sbjct 373 CTGGCATATGTGTTATCAGAACTAAACAGACGCCACAATTATGGGCTAGACCTCTTTCTC 432
Query 217 TTGTCTATTGATGAAGGGATAACGGGTTATCGTGATGATTCTCTCGAGACTGTTAAAAGG 276
||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 433 TTGTCCATAGATGAAGGGATTACGGGTTATCGTGATGATTCTCTTGAGACTGTTAAACGG 492
Query 277 AACGAGGTTCAATATGGGTTGCCTCTTCAGATTGTTTCATACAAAGATCTGTATGGATGG 336
||||| || |||||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 493 AACGAAGTCCAATATGGTTTGCCTCTTAAGATTGTTTCATATAAAGATCTGTATGGATGG 552
Query 337 ACAATGGACGAGATTGTGAAGATGATCGGTTTGAAGAACAATTGCACCTTTTGTGGTGTA 396
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 553 ACAATGGATGAGATTGTGAAAATGATTGGTTTGAAGAACAATTGCACCTTTTGTGGTGTA 612
Query 397 TTTCGTAGACAGGCACTTGATCGAGGAGCTGCATTATTGAAAGTAGATAAGCTAGTCACT 456
|| ||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 613 TTCCGTCGACAGGCACTTGACCGAGGAGCTGCGTTATTGAAAGTAGAGAAGCTAGTCACT 672
Query 457 GGACATAATGCAGATGATATAGCGGAAACAGTTCTCTTAAACATACTGCGAGGGGATATC 516
||||||||||||||||||||||| ||||| |||||||| |||||| |||||||||||||
Sbjct 673 GGACATAATGCAGATGATATAGCAGAAACCGTTCTCTTGAACATATTGCGAGGGGATATT 732
Query 517 GCTAGATTGAGTAGGTGCACATCAATCACTACTGGCGAAGATGGTCCAATTCCAAGATGT 576
|||||||| |||||||||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct 733 GCTAGATTAAGTAGGTGCACATCGATTACTACTGGTGAAGATGGTCCCATTCCAAGATGT 792
Query 577 AAACCTTTCAAATATACATATGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTG 636
||||||||||| | | || | ||||||||||||||||||||||
Sbjct 793 AAACCTTTCAACT-T---TA---------------C--GTATGCTTATTTCAAGAAGCTG 831
Query 637 GACTACTTCTCCACCGAATGCATATACTCTCCTAATGCTTATCGTGGGTTTGCTCGTGAG 696
|| ||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 832 GATTACTTCTCCACTGAATGCATTTACTCTCCTAATGCATATCGTGGGTTTGCCCGTGAG 891
Query 697 TTCATCAAAGATTTGGAACGACTAAGGCCAAGGGCTATTCTGGATATCATCAAA-TCTGG 755
|||||||||||||||||| || ||||||||||||| |||||||| ||||| ||| |||||
Sbjct 892 TTCATCAAAGATTTGGAAAGAATAAGGCCAAGGGCGATTCTGGACATCAT-AAAGTCTGG 950
Query 756 TGAAGACTTCAGAATTGCGACAACCACGAAA-ATGCCTGAGCAAGGGACGTGTGAGCGAT 814
|||||| || |||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 951 TGAAGATTTTAGAATTGCAACAACCAC-AAAGATGCCTGAGCAAGGGACGTGTGAGCGAT 1009
Query 815 GTGGGTATATTTCTAGCCAGAAATGGTGCAAAGCTTGTGTTTTGTTGGAGGGATTGAACC 874
| |||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||||||
Sbjct 1010 GCGGGTATATTTCTAGCCAGAAATGGTGTAAAGCTTGTGTTTTGCTGGAAGGACTGAACC 1069
Query 875 GTGGTTTACCTAAGATGGGCATTGGAAGACCACGAGG---AAGCGGAAATGATCAGAAGG 931
||||||| ||||||||||| ||||||||||| ||||| || || || || | ||||
Sbjct 1070 GTGGTTTGCCTAAGATGGGTATTGGAAGACCTCGAGGCGTAAATGGTGATCATAATAAGG 1129
Query 932 ACACAAAG--GC-TAGG-TCTACT-GCAAAATCTATAGAGAGCAAACAATGTGGATCTCT 986
| |||||| || | || ||| | |||||||||||||||||||||||||||||||||||
Sbjct 1130 AAACAAAGAAGCCT-GGATCTG-TAGCAAAATCTATAGAGAGCAAACAATGTGGATCTCT 1187
Query 987 GGATTTCTAAA 997
|||||||||||
Sbjct 1188 GGATTTCTAAA 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5