BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476772

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76200.1 | Symbols:  | unknown protein; Has 96 Blast hits to...   878    0.0  


> AT1G76200.1 | Symbols:  | unknown protein; Has 96 Blast hits 
to 96 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 47; Plants - 38; Viruses - 0; Other Eukaryotes 
- 11 (source: NCBI BLink). | chr1:28593250-28594742 FORWARD 
LENGTH=559
Length=559

 Score =  878 bits (475),  Expect = 0.0
 Identities = 522/543 (96%), Gaps = 9/543 (2%)
 Strand=Plus/Plus

Query  1    TTGTCAAAGCAGAGGAGAAAGAAAGC--TTTCGGTCTGAAATTGAAGTGCGAATCGGGGA  58
            |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct  18   TTGTCAAAGCTGAGGAGAAAGAAAGCTTTTTCGGTCTGAAATTGAAGTGCGAATCGGGGA  77

Query  59   ATCTAGGGTTTCGAGAGAGAGAAAATGGGTGGAGGAGGACATGGCGGAGGTATAACTTAC  118
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  78   ATCTAGGGTTTCGAGAGAGAGATAATGGGTGGAGGAGGACATGGCGGAGGTATAACTTAC  137

Query  119  AAGGGAGTCACTGTTCACACTCCCAAGACTTGGCACACCGTCACCGGAAAAGGCTTGTGC  178
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  138  AAGGGAGTCACTGTCCACACTCCCAAGACTTGGCACACCGTCACCGGAAAAGGCTTGTGC  197

Query  179  GCCGTTATGTGGTTCTGGATTCTGTACAGGGCAAAGCAAGATGGTCCTGTAGTTATGGGA  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  198  GCCGTTATGTGGTTCTGGATTCTGTACAGGGCAAAGCAAGATGGTCCTGTAGTTATGGGA  257

Query  239  TGGAGGCACCCTTGGGATGGCCATGGTGATCACGGTCACGGGGATCATCACTAGGTCTCA  298
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  258  TGGAGGCACCCTTGGGATGGTCATGGTGATCACGGTCACGGAGATCATCACTAGGTCTCA  317

Query  299  CTGAACCTTTGAAGATCATGACGAAAAAAGGGATCGTCTCTTGTTTTTT----AATTTTC  354
            ||||||||||||||||||||||||||||||| |||||||||||||||||    |||||||
Sbjct  318  CTGAACCTTTGAAGATCATGACGAAAAAAGG-ATCGTCTCTTGTTTTTTTCTTAATTTTC  376

Query  355  AGCTTCATATGTCGAAATAAAGAGAACTGTGAAGAAGACGTGAAATGTTTGTGTACACAA  414
            |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  377  AGCTTCATATGTCGAAATAAAGAGAACTGTGAAGAAGACGTGAATTGTTTTTGTACACAA  436

Query  415  CTTTGTAAGACTTGCTGCTTCTGTTTTAAGTTACTGCTTGTGT-T-GCACTTCCTGATGA  472
            ||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
Sbjct  437  CTTTGTAAGACTTGCTGCTTCTGTTTTAAGTTACTACTTGTGTGTTGCACTTCCTGATCA  496

Query  473  TGTTGTCATTTTGCTGTCTACAAATTAATTTGAAATAAAATGCATTGCGAGATTCGTGTT  532
            |||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct  497  TGTTGTTATTTTGCTGTCAACAAATTAATTTGAAATAAAACGCATTGCGAGATTCGTGTT  556

Query  533  TTT  535
            |||
Sbjct  557  TTT  559



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25619414970


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5