BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476774
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76220.1 | Symbols: | Arabidopsis protein of unknown functi... 1214 0.0
> AT1G76220.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr1:28597530-28598300 REVERSE LENGTH=771
Length=771
Score = 1214 bits (657), Expect = 0.0
Identities = 735/773 (95%), Gaps = 4/773 (1%)
Strand=Plus/Plus
Query 1 ATGGATGGTACTTCATCATCTGGTGCACACGTGCGTTCAACAAGCTGGTCCGAAGACGTT 60
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTGTACTTCATCATCTGGTGCACACGTGCGTTCAACAAGCTGGTCCGAAGACGTT 60
Query 61 AATCCTCTGTCTCGAGCCATCGAAGATCATCTTCTGATACTAAAGAAAAAACCAGAGTCC 120
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 61 AATCCTCTGTCTCGAGCCATCGAAGATCATCTTCTGTTACTAAAGAAAAGACCAGAGTCC 120
Query 121 GCTCGTCGGAAACTTGGAGTTTTAAATAATCTCTACGAGGTTGTCGAAGTTTTCCTCCGT 180
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 121 GCTCGTCGGAAACTTGGAGTTTTAAAGAATCTGTACGAGGTTGTCGAAGTTTTCCTCCGT 180
Query 181 TTTCAAACGACCAAAACTCAAAAATCTTTCACCGGATTTGAAGATGTTTCCGACGGATTC 240
||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 181 TTTCAAACGACTAAAACTCAAAAGTCTTTCACAGGATTTGAAGATGTTTCTGACGGATTC 240
Query 241 ATCGAGGTTCTTGATATTTGCAGCACGATCAGAGACGTTCTGATGGAGATAAAGGAACAA 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCGAGGTTCTTGATATCTGCAGCACGATCAGAGACGTTCTGATGGAGATAAAGGAACAA 300
Query 301 GTTAGGGAACTCGAATCGAGCTTGAGGAGGAGATTGATCAGAAGCAAATCAGGAGAAGAT 360
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 GTCAGGGAACTCGAATCAAGCTTGAGGAGGAGATTGATCAGAAGCAAGTCAGGAGAAGAT 360
Query 361 CAAGAAGCTTTCGTGGCGCGTGAG-CTAGACGCTTACGTGTTTAAGAGAAGAGCATTGAG 419
|||||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||||
Sbjct 361 CAAGAAGCTTTCGTGGCGCGTGAGAC-AGACGCGTACGTGTTTAAGAGAAGAGCACTGAG 419
Query 420 CAGAACAATTGTCAAACAATTGAAGAAAACAGAGGATAAGATGAGGAAGAAGAAGAGAGA 479
|||||| || |||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 420 CAGAACCATCGTCAAACAATTGAAGAAAACAGAGGAGAAGATGAGGAAGAGGAAGAGAGA 479
Query 480 TTGTGGAGACGTCATTAATGTAATGAAAAGAGTTGAAAAGACGAGCTTTGATGTTTTGGT 539
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 TTGTGGAGATGTCATTAATGTAATGAAAAGAGTTGAAAAGACCAGCTTTGATGTTTTGGT 539
Query 540 TTCTTTGTTGATCCAAGTCGTGACGAAGGATCAGAGAGATGATAAGAAGAG-ATCAAGAA 598
|||||||||||| | || ||||||||||||||||||||| | ||||| || |||||| |
Sbjct 540 TTCTTTGTTGATTGAGGTAGTGACGAAGGATCAGAGAGATCAAAAGAA-AGGATCAAGGA 598
Query 599 GAGGAATTGTGTCGAGGGTTTTTAATAAGAAGAATCAAGAAGTTGATGCGGAtgagctga 658
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 599 GAGGAATTGTGTCGAGGATTTTTAATAAGAAGAATCAAGAAGTTGATGTGGATGAGCTGA 658
Query 659 agaagttgagagaaacagagcatgagattgaagaaacagagagagagttggagTGTGTGT 718
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 659 AGAAGTTGAGAGAAACAGAACATGAGATTGAAGAAACAGAGAAAGAGTTGGAGTGTGTGT 718
Query 719 ATAAGAAACTGTTGAAGACAAGAGTTTCTTTTCTTAATATGCTTACTCTTTGA 771
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 719 ATAAGAAACTGTTGAAGACAAGAGTTTCTTTTCTTAACATGCTTACTCTTTGA 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5