BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476775 Length=517 Score E Sequences producing significant alignments: (Bits) Value AT1G76230.1 | Symbols: | unknown protein; Has 26 Blast hits to... 497 3e-140 > AT1G76230.1 | Symbols: | unknown protein; Has 26 Blast hits to 18 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:28599760-28600442 REVERSE LENGTH=683 Length=683 Score = 497 bits (269), Expect = 3e-140 Identities = 414/480 (86%), Gaps = 26/480 (5%) Strand=Plus/Plus Query 23 CGAAAGAGGAATATTTGCCTACCATTACCAAG---CA-A-GTTTCAGATGAACTTGAGAA 77 |||||||||||||||| || | || | |||| || | | ||||| |||||||||| Sbjct 115 CGAAAGAGGAATATTTACCAAACA--AGCAAGTTTCAGATGAATCAGAACAACTTGAGAA 172 Query 78 GAGTTGTTTGACAGAAGAAGAAGATGCCTGTTTGTCTGATGCTAGTCATAGCAGTAAGAA 137 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 173 GAGTTGTTTGACAGAAGAAGAAGATGCGTGTTTGTCTGATGCTAGTCATAGCAGTAAGAA 232 Query 138 GAGGATAAGGGAAGATACGACTTGTGAATCAAAGAAGAGTAAGAAACAGAAGCCGAGCAA 197 || ||||||||||||| | | ||||||||||||||| || ||||| | ||||| ||||| Sbjct 233 GACGATAAGGGAAGATGCAATTTGTGAATCAAAGAATAGAAAGAAGTATAAGCCAAGCAA 292 Query 198 AGAACCTTGG-TTCAAGACGTTATCTGATGATGACTGGCTTTTTGGTAACAATCAGCAAA 256 ||| | ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 293 CGAATC-TGGATTCAACACGTTATTTGATGATGACTGGCTTTTTGGTAACAATCAGCAAA 351 Query 257 AG-A-G-TCTTACTAATAATAAAGCAGCTATCAAGAACGATGAAGACATGATCAGGAAGT 313 || | | | |||| | ||||||||| |||||||||||||||| ||| ||||||| ||||| Sbjct 352 AGAATGTTGTTACCACTAATAAAGCCGCTATCAAGAACGATGCAGAGATGATCATGAAGT 411 Query 314 TGCTGCAGAGATCATGTGGAGATTCCTTGTTTCCTA---A-GGCTCAGTTTTTGCCTCAA 369 |||||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||| Sbjct 412 TGCTGCAGAGATCATGTGGAGATTCCTTGTTTCCTAGCTAAGGCCCAGTTTTCGCCTCAA 471 Query 370 TTCGGAATTTTTGTAGTACCATATACAGTTCCGTTTTAA--GTCTCCATATTGTTTTCTT 427 |||||||| |||||| ||||||||||||||||||| ||| ||||| ||||||||||| Sbjct 472 TTCGGAATATTTGTATTACCATATACAGTTCCGTTCTAACTGTCTCTGTATTGTTTTCTC 531 Query 428 ATTCCTC-A--G-AGTTAGCCTTAGCCTGTGATCTATTCGG--AT--ATATTTCATATCC 479 || |||| | | | |||||||||||||||||||||||||| || ||||||||||||| Sbjct 532 ATCCCTCGATCGGATTTAGCCTTAGCCTGTGATCTATTCGGGTATGTATATTTCATATCC 591 Score = 73.1 bits (39), Expect = 2e-12 Identities = 39/39 (100%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 479 CGTACAAGAGTTTCCTTTTTGTAGATTTCCTTTTCCTTG 517 ||||||||||||||||||||||||||||||||||||||| Sbjct 637 CGTACAAGAGTTTCCTTTTTGTAGATTTCCTTTTCCTTG 675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24715200324 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5