BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476775

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76230.1 | Symbols:  | unknown protein; Has 26 Blast hits to...   497    3e-140


> AT1G76230.1 | Symbols:  | unknown protein; Has 26 Blast hits 
to 18 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes 
- 2 (source: NCBI BLink). | chr1:28599760-28600442 REVERSE 
LENGTH=683
Length=683

 Score =  497 bits (269),  Expect = 3e-140
 Identities = 414/480 (86%), Gaps = 26/480 (5%)
 Strand=Plus/Plus

Query  23   CGAAAGAGGAATATTTGCCTACCATTACCAAG---CA-A-GTTTCAGATGAACTTGAGAA  77
            |||||||||||||||| || | ||  | ||||   || | |  |||||  ||||||||||
Sbjct  115  CGAAAGAGGAATATTTACCAAACA--AGCAAGTTTCAGATGAATCAGAACAACTTGAGAA  172

Query  78   GAGTTGTTTGACAGAAGAAGAAGATGCCTGTTTGTCTGATGCTAGTCATAGCAGTAAGAA  137
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  173  GAGTTGTTTGACAGAAGAAGAAGATGCGTGTTTGTCTGATGCTAGTCATAGCAGTAAGAA  232

Query  138  GAGGATAAGGGAAGATACGACTTGTGAATCAAAGAAGAGTAAGAAACAGAAGCCGAGCAA  197
            || ||||||||||||| | | ||||||||||||||| || |||||  | ||||| |||||
Sbjct  233  GACGATAAGGGAAGATGCAATTTGTGAATCAAAGAATAGAAAGAAGTATAAGCCAAGCAA  292

Query  198  AGAACCTTGG-TTCAAGACGTTATCTGATGATGACTGGCTTTTTGGTAACAATCAGCAAA  256
             ||| | ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct  293  CGAATC-TGGATTCAACACGTTATTTGATGATGACTGGCTTTTTGGTAACAATCAGCAAA  351

Query  257  AG-A-G-TCTTACTAATAATAAAGCAGCTATCAAGAACGATGAAGACATGATCAGGAAGT  313
            || | | | |||| | ||||||||| |||||||||||||||| ||| ||||||| |||||
Sbjct  352  AGAATGTTGTTACCACTAATAAAGCCGCTATCAAGAACGATGCAGAGATGATCATGAAGT  411

Query  314  TGCTGCAGAGATCATGTGGAGATTCCTTGTTTCCTA---A-GGCTCAGTTTTTGCCTCAA  369
            ||||||||||||||||||||||||||||||||||||   | ||| ||||||| |||||||
Sbjct  412  TGCTGCAGAGATCATGTGGAGATTCCTTGTTTCCTAGCTAAGGCCCAGTTTTCGCCTCAA  471

Query  370  TTCGGAATTTTTGTAGTACCATATACAGTTCCGTTTTAA--GTCTCCATATTGTTTTCTT  427
            |||||||| |||||| ||||||||||||||||||| |||  |||||  ||||||||||| 
Sbjct  472  TTCGGAATATTTGTATTACCATATACAGTTCCGTTCTAACTGTCTCTGTATTGTTTTCTC  531

Query  428  ATTCCTC-A--G-AGTTAGCCTTAGCCTGTGATCTATTCGG--AT--ATATTTCATATCC  479
            || |||| |  | | ||||||||||||||||||||||||||  ||  |||||||||||||
Sbjct  532  ATCCCTCGATCGGATTTAGCCTTAGCCTGTGATCTATTCGGGTATGTATATTTCATATCC  591


 Score = 73.1 bits (39),  Expect = 2e-12
 Identities = 39/39 (100%), Gaps = 0/39 (0%)
 Strand=Plus/Plus

Query  479  CGTACAAGAGTTTCCTTTTTGTAGATTTCCTTTTCCTTG  517
            |||||||||||||||||||||||||||||||||||||||
Sbjct  637  CGTACAAGAGTTTCCTTTTTGTAGATTTCCTTTTCCTTG  675



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24715200324


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5